0.017074
0.000000
0.001734
0.000000
0.017607
0.000000
0.000000
0.000000
0.025372
0.00000
0.00000
0.00000
Mizuno, H.
Fujimoto, Z.
Koizumi, M.
Kano, H.
Atoda, H.
Morita, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
95.80
90.00
58.569
56.794
39.616
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
289
103
112
10.1006/jmbi.1999.2756
10339409
Crystal structure of coagulation factor IX-binding protein from habu snake venom at 2.6 A: implication of central loop swapping based on deletion in the linker region.
1999
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
4
438
Structure of Coagulation Factors Ix/X-Binding Protein, a Heterodimer of C-Type Lectin Domains
1997
JA
J.Biochem.(Tokyo)
JOBIAO
0418
0021-924X
118
965
Blood Coagulation Factor Ix-Binding Protein from the Venom of Trimeresurus Flavoviridis: Purification and Characterization
1995
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
1995-06-15
RIGAKU
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
BL-6A
Photon Factory
1.00
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
DISULPHIDE DIMER BETWEEN A CYS79 AND B CYS75, PROTEIN COMPOSED OF HOMOLOGOUS SUBUNITS TO THE CARBOHYDRATE RECOGNITION DOMAIN OF C-TYPE LECTIN
14655.184
PROTEIN (COAGULATION FACTOR IX-BINDING PROTEIN A)
C-TYPE LECTIN CRD DOMAIN
1
nat
polymer
DISULPHIDE DIMER BETWEEN A CYS79 AND B CYS75, PROTEIN COMPOSED OF HOMOLOGOUS SUBUNITS TO THE CARBOHYDRATE RECOGNITION DOMAIN OF C-TYPE LECTIN
14455.071
PROTEIN (COAGULATION FACTOR IX-BINDING PROTEIN B)
C-TYPE LECTIN CRD DOMAIN
1
nat
polymer
40.078
CALCIUM ION
2
syn
non-polymer
18.015
water
83
nat
water
IX-BP
IX-BP
no
no
DCPSGWSSYEGHCYKPFKLYKTWDDAERFCTEQAKGGHLVSIESAGEADFVAQLVTENIQNTKSYVWIGLRVQGKEKQCS
SEWSDGSSVSYENWIEAESKTCLGLEKETGFRKWVNIYCGQQNPFVCEA
DCPSGWSSYEGHCYKPFKLYKTWDDAERFCTEQAKGGHLVSIESAGEADFVAQLVTENIQNTKSYVWIGLRVQGKEKQCS
SEWSDGSSVSYENWIEAESKTCLGLEKETGFRKWVNIYCGQQNPFVCEA
A
polypeptide(L)
no
no
DCPSDWSSYEGHCYKPFSEPKNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFGHSIFWMGLSNVWNQCNWQWS
NAAMLRYKAWAEESYCVYFKSTNNKWRSRACRMMAQFVCEFQA
DCPSDWSSYEGHCYKPFSEPKNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFGHSIFWMGLSNVWNQCNWQWS
NAAMLRYKAWAEESYCVYFKSTNNKWRSRACRMMAQFVCEFQA
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Trimeresurus
sample
88087
Trimeresurus flavoviridis
VENOM
Trimeresurus
sample
88087
Trimeresurus flavoviridis
VENOM
2
2.3
47
7.8
PROTEIN WAS CRYSTALLIZED BY MIXING WITH EQUAL VOLUME OF 60% AMMONIUM SULPHATE
IN 20 MM TRI-HCL BUFFER AT PH 7.8 CONTAINING AND AT ROOM TEMPERATURE
software
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
1
0
1999-08-16
1
1
2007-10-16
1
2
2011-07-13
1
3
2017-10-04
_software.classification
BNL
Y
RCSB
1998-07-02
REL
CA
CALCIUM ION
HOH
water
REFERENCE: MATURE PROTEIN LACKS INITIAL 23 RESIDUES, B
CHAIN OF IX-BINDING PROTEIN IS THE SAME AS THAT OF
FACTOR IX/FACTOR X-BINDING ANTICOAGULANT PROTEIN.
CA
1
3
CA
CA
130
A
CA
2
3
CA
CA
124
B
HOH
8
4
HOH
HOH
131
A
HOH
9
4
HOH
HOH
132
A
HOH
22
4
HOH
HOH
133
A
HOH
23
4
HOH
HOH
134
A
HOH
24
4
HOH
HOH
135
A
HOH
25
4
HOH
HOH
136
A
HOH
26
4
HOH
HOH
137
A
HOH
27
4
HOH
HOH
138
A
HOH
28
4
HOH
HOH
139
A
HOH
29
4
HOH
HOH
140
A
HOH
30
4
HOH
HOH
141
A
HOH
31
4
HOH
HOH
142
A
HOH
32
4
HOH
HOH
143
A
HOH
33
4
HOH
HOH
144
A
HOH
34
4
HOH
HOH
145
A
HOH
35
4
HOH
HOH
146
A
HOH
36
4
HOH
HOH
147
A
HOH
37
4
HOH
HOH
148
A
HOH
38
4
HOH
HOH
149
A
HOH
39
4
HOH
HOH
150
A
HOH
43
4
HOH
HOH
151
A
HOH
44
4
HOH
HOH
152
A
HOH
45
4
HOH
HOH
153
A
HOH
46
4
HOH
HOH
154
A
HOH
47
4
HOH
HOH
155
A
HOH
48
4
HOH
HOH
156
A
HOH
49
4
HOH
HOH
157
A
HOH
50
4
HOH
HOH
158
A
HOH
51
4
HOH
HOH
159
A
HOH
52
4
HOH
HOH
160
A
HOH
53
4
HOH
HOH
161
A
HOH
54
4
HOH
HOH
162
A
HOH
55
4
HOH
HOH
163
A
HOH
56
4
HOH
HOH
164
A
HOH
57
4
HOH
HOH
165
A
HOH
58
4
HOH
HOH
166
A
HOH
59
4
HOH
HOH
167
A
HOH
60
4
HOH
HOH
168
A
HOH
62
4
HOH
HOH
169
A
HOH
77
4
HOH
HOH
170
A
HOH
83
4
HOH
HOH
171
A
HOH
1
4
HOH
HOH
125
B
HOH
2
4
HOH
HOH
126
B
HOH
3
4
HOH
HOH
127
B
HOH
4
4
HOH
HOH
128
B
HOH
5
4
HOH
HOH
129
B
HOH
6
4
HOH
HOH
130
B
HOH
7
4
HOH
HOH
131
B
HOH
10
4
HOH
HOH
132
B
HOH
11
4
HOH
HOH
133
B
HOH
12
4
HOH
HOH
134
B
HOH
13
4
HOH
HOH
135
B
HOH
14
4
HOH
HOH
136
B
HOH
15
4
HOH
HOH
137
B
HOH
16
4
HOH
HOH
138
B
HOH
17
4
HOH
HOH
139
B
HOH
18
4
HOH
HOH
140
B
HOH
19
4
HOH
HOH
141
B
HOH
20
4
HOH
HOH
142
B
HOH
21
4
HOH
HOH
143
B
HOH
40
4
HOH
HOH
144
B
HOH
41
4
HOH
HOH
145
B
HOH
42
4
HOH
HOH
146
B
HOH
61
4
HOH
HOH
147
B
HOH
63
4
HOH
HOH
148
B
HOH
64
4
HOH
HOH
149
B
HOH
65
4
HOH
HOH
150
B
HOH
66
4
HOH
HOH
151
B
HOH
67
4
HOH
HOH
152
B
HOH
68
4
HOH
HOH
153
B
HOH
69
4
HOH
HOH
154
B
HOH
70
4
HOH
HOH
155
B
HOH
71
4
HOH
HOH
156
B
HOH
72
4
HOH
HOH
157
B
HOH
73
4
HOH
HOH
158
B
HOH
74
4
HOH
HOH
159
B
HOH
75
4
HOH
HOH
160
B
HOH
76
4
HOH
HOH
161
B
HOH
78
4
HOH
HOH
162
B
HOH
79
4
HOH
HOH
163
B
HOH
80
4
HOH
HOH
164
B
HOH
81
4
HOH
HOH
165
B
HOH
82
4
HOH
HOH
166
B
ASP
1
n
1
ASP
1
A
CYS
2
n
2
CYS
2
A
PRO
3
n
3
PRO
3
A
SER
4
n
4
SER
4
A
GLY
5
n
5
GLY
5
A
TRP
6
n
6
TRP
6
A
SER
7
n
7
SER
7
A
SER
8
n
8
SER
8
A
TYR
9
n
9
TYR
9
A
GLU
10
n
10
GLU
10
A
GLY
11
n
11
GLY
11
A
HIS
12
n
12
HIS
12
A
CYS
13
n
13
CYS
13
A
TYR
14
n
14
TYR
14
A
LYS
15
n
15
LYS
15
A
PRO
16
n
16
PRO
16
A
PHE
17
n
17
PHE
17
A
LYS
18
n
18
LYS
18
A
LEU
19
n
19
LEU
19
A
TYR
20
n
20
TYR
20
A
LYS
21
n
21
LYS
21
A
THR
22
n
22
THR
22
A
TRP
23
n
23
TRP
23
A
ASP
24
n
24
ASP
24
A
ASP
25
n
25
ASP
25
A
ALA
26
n
26
ALA
26
A
GLU
27
n
27
GLU
27
A
ARG
28
n
28
ARG
28
A
PHE
29
n
29
PHE
29
A
CYS
30
n
30
CYS
30
A
THR
31
n
31
THR
31
A
GLU
32
n
32
GLU
32
A
GLN
33
n
33
GLN
33
A
ALA
34
n
34
ALA
34
A
LYS
35
n
35
LYS
35
A
GLY
36
n
36
GLY
36
A
GLY
37
n
37
GLY
37
A
HIS
38
n
38
HIS
38
A
LEU
39
n
39
LEU
39
A
VAL
40
n
40
VAL
40
A
SER
41
n
41
SER
41
A
ILE
42
n
42
ILE
42
A
GLU
43
n
43
GLU
43
A
SER
44
n
44
SER
44
A
ALA
45
n
45
ALA
45
A
GLY
46
n
46
GLY
46
A
GLU
47
n
47
GLU
47
A
ALA
48
n
48
ALA
48
A
ASP
49
n
49
ASP
49
A
PHE
50
n
50
PHE
50
A
VAL
51
n
51
VAL
51
A
ALA
52
n
52
ALA
52
A
GLN
53
n
53
GLN
53
A
LEU
54
n
54
LEU
54
A
VAL
55
n
55
VAL
55
A
THR
56
n
56
THR
56
A
GLU
57
n
57
GLU
57
A
ASN
58
n
58
ASN
58
A
ILE
59
n
59
ILE
59
A
GLN
60
n
60
GLN
60
A
ASN
61
n
61
ASN
61
A
THR
62
n
62
THR
62
A
LYS
63
n
63
LYS
63
A
SER
64
n
64
SER
64
A
TYR
65
n
65
TYR
65
A
VAL
66
n
66
VAL
66
A
TRP
67
n
67
TRP
67
A
ILE
68
n
68
ILE
68
A
GLY
69
n
69
GLY
69
A
LEU
70
n
70
LEU
70
A
ARG
71
n
71
ARG
71
A
VAL
72
n
72
VAL
72
A
GLN
73
n
73
GLN
73
A
GLY
74
n
74
GLY
74
A
LYS
75
n
75
LYS
75
A
GLU
76
n
76
GLU
76
A
LYS
77
n
77
LYS
77
A
GLN
78
n
78
GLN
78
A
CYS
79
n
79
CYS
79
A
SER
80
n
80
SER
80
A
SER
81
n
81
SER
81
A
GLU
82
n
82
GLU
82
A
TRP
83
n
83
TRP
83
A
SER
84
n
84
SER
84
A
ASP
85
n
85
ASP
85
A
GLY
86
n
86
GLY
86
A
SER
87
n
87
SER
87
A
SER
88
n
88
SER
88
A
VAL
89
n
89
VAL
89
A
SER
90
n
90
SER
90
A
TYR
91
n
91
TYR
91
A
GLU
92
n
92
GLU
92
A
ASN
93
n
93
ASN
93
A
TRP
94
n
94
TRP
94
A
ILE
95
n
95
ILE
95
A
GLU
96
n
96
GLU
96
A
ALA
97
n
97
ALA
97
A
GLU
98
n
98
GLU
98
A
SER
99
n
99
SER
99
A
LYS
100
n
100
LYS
100
A
THR
101
n
101
THR
101
A
CYS
102
n
102
CYS
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
LEU
105
n
105
LEU
105
A
GLU
106
n
106
GLU
106
A
LYS
107
n
107
LYS
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
PHE
111
n
111
PHE
111
A
ARG
112
n
112
ARG
112
A
LYS
113
n
113
LYS
113
A
TRP
114
n
114
TRP
114
A
VAL
115
n
115
VAL
115
A
ASN
116
n
116
ASN
116
A
ILE
117
n
117
ILE
117
A
TYR
118
n
118
TYR
118
A
CYS
119
n
119
CYS
119
A
GLY
120
n
120
GLY
120
A
GLN
121
n
121
GLN
121
A
GLN
122
n
122
GLN
122
A
ASN
123
n
123
ASN
123
A
PRO
124
n
124
PRO
124
A
PHE
125
n
125
PHE
125
A
VAL
126
n
126
VAL
126
A
CYS
127
n
127
CYS
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ASP
1
n
1
ASP
1
B
CYS
2
n
2
CYS
2
B
PRO
3
n
3
PRO
3
B
SER
4
n
4
SER
4
B
ASP
5
n
5
ASP
5
B
TRP
6
n
6
TRP
6
B
SER
7
n
7
SER
7
B
SER
8
n
8
SER
8
B
TYR
9
n
9
TYR
9
B
GLU
10
n
10
GLU
10
B
GLY
11
n
11
GLY
11
B
HIS
12
n
12
HIS
12
B
CYS
13
n
13
CYS
13
B
TYR
14
n
14
TYR
14
B
LYS
15
n
15
LYS
15
B
PRO
16
n
16
PRO
16
B
PHE
17
n
17
PHE
17
B
SER
18
n
18
SER
18
B
GLU
19
n
19
GLU
19
B
PRO
20
n
20
PRO
20
B
LYS
21
n
21
LYS
21
B
ASN
22
n
22
ASN
22
B
TRP
23
n
23
TRP
23
B
ALA
24
n
24
ALA
24
B
ASP
25
n
25
ASP
25
B
ALA
26
n
26
ALA
26
B
GLU
27
n
27
GLU
27
B
ASN
28
n
28
ASN
28
B
PHE
29
n
29
PHE
29
B
CYS
30
n
30
CYS
30
B
THR
31
n
31
THR
31
B
GLN
32
n
32
GLN
32
B
GLN
33
n
33
GLN
33
B
HIS
34
n
34
HIS
34
B
ALA
35
n
35
ALA
35
B
GLY
36
n
36
GLY
36
B
GLY
37
n
37
GLY
37
B
HIS
38
n
38
HIS
38
B
LEU
39
n
39
LEU
39
B
VAL
40
n
40
VAL
40
B
SER
41
n
41
SER
41
B
PHE
42
n
42
PHE
42
B
GLN
43
n
43
GLN
43
B
SER
44
n
44
SER
44
B
SER
45
n
45
SER
45
B
GLU
46
n
46
GLU
46
B
GLU
47
n
47
GLU
47
B
ALA
48
n
48
ALA
48
B
ASP
49
n
49
ASP
49
B
PHE
50
n
50
PHE
50
B
VAL
51
n
51
VAL
51
B
VAL
52
n
52
VAL
52
B
LYS
53
n
53
LYS
53
B
LEU
54
n
54
LEU
54
B
ALA
55
n
55
ALA
55
B
PHE
56
n
56
PHE
56
B
GLN
57
n
57
GLN
57
B
THR
58
n
58
THR
58
B
PHE
59
n
59
PHE
59
B
GLY
60
n
60
GLY
60
B
HIS
61
n
61
HIS
61
B
SER
62
n
62
SER
62
B
ILE
63
n
63
ILE
63
B
PHE
64
n
64
PHE
64
B
TRP
65
n
65
TRP
65
B
MET
66
n
66
MET
66
B
GLY
67
n
67
GLY
67
B
LEU
68
n
68
LEU
68
B
SER
69
n
69
SER
69
B
ASN
70
n
70
ASN
70
B
VAL
71
n
71
VAL
71
B
TRP
72
n
72
TRP
72
B
ASN
73
n
73
ASN
73
B
GLN
74
n
74
GLN
74
B
CYS
75
n
75
CYS
75
B
ASN
76
n
76
ASN
76
B
TRP
77
n
77
TRP
77
B
GLN
78
n
78
GLN
78
B
TRP
79
n
79
TRP
79
B
SER
80
n
80
SER
80
B
ASN
81
n
81
ASN
81
B
ALA
82
n
82
ALA
82
B
ALA
83
n
83
ALA
83
B
MET
84
n
84
MET
84
B
LEU
85
n
85
LEU
85
B
ARG
86
n
86
ARG
86
B
TYR
87
n
87
TYR
87
B
LYS
88
n
88
LYS
88
B
ALA
89
n
89
ALA
89
B
TRP
90
n
90
TRP
90
B
ALA
91
n
91
ALA
91
B
GLU
92
n
92
GLU
92
B
GLU
93
n
93
GLU
93
B
SER
94
n
94
SER
94
B
TYR
95
n
95
TYR
95
B
CYS
96
n
96
CYS
96
B
VAL
97
n
97
VAL
97
B
TYR
98
n
98
TYR
98
B
PHE
99
n
99
PHE
99
B
LYS
100
n
100
LYS
100
B
SER
101
n
101
SER
101
B
THR
102
n
102
THR
102
B
ASN
103
n
103
ASN
103
B
ASN
104
n
104
ASN
104
B
LYS
105
n
105
LYS
105
B
TRP
106
n
106
TRP
106
B
ARG
107
n
107
ARG
107
B
SER
108
n
108
SER
108
B
ARG
109
n
109
ARG
109
B
ALA
110
n
110
ALA
110
B
CYS
111
n
111
CYS
111
B
ARG
112
n
112
ARG
112
B
MET
113
n
113
MET
113
B
MET
114
n
114
MET
114
B
ALA
115
n
115
ALA
115
B
GLN
116
n
116
GLN
116
B
PHE
117
n
117
PHE
117
B
VAL
118
n
118
VAL
118
B
CYS
119
n
119
CYS
119
B
GLU
120
n
120
GLU
120
B
PHE
121
n
121
PHE
121
B
GLN
122
n
122
GLN
122
B
ALA
123
n
123
ALA
123
B
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3740
-49
12210
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
SER
41
A
OG
SER
41
1_555
59.7
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
43
A
OE1
GLU
43
1_555
89.5
A
SER
41
A
OG
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
43
A
OE1
GLU
43
1_555
73.0
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
47
A
OE1
GLU
47
1_555
65.0
A
SER
41
A
OG
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
47
A
OE1
GLU
47
1_555
116.5
A
GLU
43
A
OE1
GLU
43
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
47
A
OE1
GLU
47
1_555
78.0
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
47
A
OE2
GLU
47
1_555
73.4
A
SER
41
A
OG
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
47
A
OE2
GLU
47
1_555
128.9
A
GLU
43
A
OE1
GLU
43
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
47
A
OE2
GLU
47
1_555
128.5
A
GLU
47
A
OE1
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
47
A
OE2
GLU
47
1_555
50.6
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE2
GLU
128
1_555
114.2
A
SER
41
A
OG
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE2
GLU
128
1_555
100.2
A
GLU
43
A
OE1
GLU
43
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE2
GLU
128
1_555
148.4
A
GLU
47
A
OE1
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE2
GLU
128
1_555
130.0
A
GLU
47
A
OE2
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE2
GLU
128
1_555
80.3
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
171
E
O
HOH
1_555
128.8
A
SER
41
A
OG
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
171
E
O
HOH
1_555
69.9
A
GLU
43
A
OE1
GLU
43
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
171
E
O
HOH
1_555
66.7
A
GLU
47
A
OE1
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
171
E
O
HOH
1_555
140.7
A
GLU
47
A
OE2
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
171
E
O
HOH
1_555
156.2
A
GLU
128
A
OE2
GLU
128
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
171
E
O
HOH
1_555
81.8
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
170
E
O
HOH
1_555
147.7
A
SER
41
A
OG
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
170
E
O
HOH
1_555
142.4
A
GLU
43
A
OE1
GLU
43
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
170
E
O
HOH
1_555
81.0
A
GLU
47
A
OE1
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
170
E
O
HOH
1_555
82.9
A
GLU
47
A
OE2
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
170
E
O
HOH
1_555
88.5
A
GLU
128
A
OE2
GLU
128
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
170
E
O
HOH
1_555
87.9
A
HOH
171
E
O
HOH
1_555
A
CA
130
C
CA
CA
1_555
A
HOH
170
E
O
HOH
1_555
75.1
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
90.6
A
SER
41
A
OG
SER
41
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
58.7
A
GLU
43
A
OE1
GLU
43
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
123.1
A
GLU
47
A
OE1
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
148.8
A
GLU
47
A
OE2
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
105.7
A
GLU
128
A
OE2
GLU
128
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
41.4
A
HOH
171
E
O
HOH
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
69.7
A
HOH
170
E
O
HOH
1_555
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
120.4
B
SER
41
B
O
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
SER
41
B
OG
SER
41
1_555
64.5
B
SER
41
B
O
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
GLN
43
B
OE1
GLN
43
1_555
76.6
B
SER
41
B
OG
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
GLN
43
B
OE1
GLN
43
1_555
69.0
B
SER
41
B
O
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
GLU
47
B
OE2
GLU
47
1_555
67.4
B
SER
41
B
OG
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
GLU
47
B
OE2
GLU
47
1_555
131.8
B
GLN
43
B
OE1
GLN
43
1_555
B
CA
124
D
CA
CA
1_555
B
GLU
47
B
OE2
GLU
47
1_555
97.8
B
SER
41
B
O
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
GLU
120
B
OE2
GLU
120
1_555
79.7
B
SER
41
B
OG
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
GLU
120
B
OE2
GLU
120
1_555
94.0
B
GLN
43
B
OE1
GLN
43
1_555
B
CA
124
D
CA
CA
1_555
B
GLU
120
B
OE2
GLU
120
1_555
155.1
B
GLU
47
B
OE2
GLU
47
1_555
B
CA
124
D
CA
CA
1_555
B
GLU
120
B
OE2
GLU
120
1_555
79.8
B
SER
41
B
O
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
162
F
O
HOH
1_555
124.6
B
SER
41
B
OG
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
162
F
O
HOH
1_555
136.2
B
GLN
43
B
OE1
GLN
43
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
162
F
O
HOH
1_555
72.3
B
GLU
47
B
OE2
GLU
47
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
162
F
O
HOH
1_555
72.9
B
GLU
120
B
OE2
GLU
120
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
162
F
O
HOH
1_555
128.9
B
SER
41
B
O
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
157
F
O
HOH
1_555
139.2
B
SER
41
B
OG
SER
41
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
157
F
O
HOH
1_555
74.9
B
GLN
43
B
OE1
GLN
43
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
157
F
O
HOH
1_555
92.4
B
GLU
47
B
OE2
GLU
47
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
157
F
O
HOH
1_555
153.3
B
GLU
120
B
OE2
GLU
120
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
157
F
O
HOH
1_555
100.7
B
HOH
162
F
O
HOH
1_555
B
CA
124
D
CA
CA
1_555
B
HOH
157
F
O
HOH
1_555
87.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
TYR
91
0.089
SIDE CHAIN
1
-16.90
2.70
111.00
94.10
A
A
A
N
CA
C
ILE
ILE
ILE
95
95
95
N
1
7.40
1.10
114.20
121.60
A
A
A
CA
CB
SG
CYS
CYS
CYS
127
127
127
N
1
A
TYR
9
-162.61
116.14
1
A
LYS
18
-106.89
61.35
1
A
GLU
32
-92.79
38.16
1
A
GLN
60
-35.60
65.85
1
A
LYS
63
-22.53
108.40
1
A
SER
64
-177.91
-173.13
1
A
ASN
93
-159.74
56.80
1
A
PHE
111
49.34
22.13
1
B
PRO
3
-44.77
163.20
1
B
SER
18
-143.82
37.15
1
B
HIS
34
176.52
145.31
1
B
THR
58
-72.94
-84.26
1
B
HIS
61
176.36
101.29
1
B
ASN
70
30.34
43.23
1
B
ARG
86
-138.08
-69.07
1
B
ALA
89
-150.65
30.81
1
B
SER
101
-43.00
-5.42
1
B
ASN
104
-83.00
31.28
1
B
ARG
112
-63.85
12.65
1
B
GLN
116
-73.93
-166.66
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM19.SOL
TOPH19X.ION
PARAM19X.ION
TOPH19X.SOL
17.3
0.00
0.00
0.00
0.00
0.00
0.00
0.271
0.014
0.182
0.182
2.6
6.0
367
6570
5.6
88.8
RANDOM
10000000.00
0.001
1
RESTRAINED
THROUGHOUT
2.0
SIRAS
0.37
0.25
5.00
0.35
0.30
2.6
6.0
83
2132
2
0
2047
0.013
1.8
25.3
1.51
1.44
1.50
2.16
2.00
2.13
2.00
3.00
2.50
0.33
0.045
0.234
2.75
53
842
6
5.9
73.1
25.1
2.6
100.0
1BJ3
7253
3.0
0.102
1
12.0
4.1
90
0.145
2.6
2.72
8.6
1
2.3
74
data scaling
WEIS
data reduction
DENZO
data scaling
SCALEPACK
phasing
PHASES
PROGRAM PACKAGE
refinement
X-PLOR
2.1
data reduction
WEIS
COAGULATION FACTOR IX-BINDING PROTEIN A, COAGULATION FACTOR IX-BINDING PROTEIN B
CRYSTAL STRUCTURE OF COAGULATION FACTOR IX-BINDING PROTEIN (IX-BP) FROM VENOM OF HABU SNAKE WITH A HETERODIMER OF C-TYPE LECTIN DOMAINS
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
TRP
23
A
TRP
23
HELX_P
A
GLN
33
A
GLN
33
1
H1
11
A
ALA
45
A
ALA
45
HELX_P
A
THR
56
A
THR
56
1
H2
12
B
TRP
23
B
TRP
23
HELX_P
B
GLN
33
B
GLN
33
1
H3
11
B
SER
45
B
SER
45
HELX_P
B
PHE
56
B
PHE
56
1
H4
12
disulf
2.018
A
CYS
2
A
SG
CYS
2
1_555
A
CYS
13
A
SG
CYS
13
1_555
disulf
2.017
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
127
A
SG
CYS
127
1_555
disulf
2.019
A
CYS
79
A
SG
CYS
79
1_555
B
CYS
75
B
SG
CYS
75
1_555
disulf
2.014
A
CYS
102
A
SG
CYS
102
1_555
A
CYS
119
A
SG
CYS
119
1_555
disulf
2.021
B
CYS
2
B
SG
CYS
2
1_555
B
CYS
13
B
SG
CYS
13
1_555
disulf
2.043
B
CYS
30
B
SG
CYS
30
1_555
B
CYS
119
B
SG
CYS
119
1_555
disulf
2.027
B
CYS
96
B
SG
CYS
96
1_555
B
CYS
111
B
SG
CYS
111
1_555
metalc
2.467
A
SER
41
A
O
SER
41
1_555
A
CA
130
C
CA
CA
1_555
metalc
2.594
A
SER
41
A
OG
SER
41
1_555
A
CA
130
C
CA
CA
1_555
metalc
2.513
A
GLU
43
A
OE1
GLU
43
1_555
A
CA
130
C
CA
CA
1_555
metalc
2.775
A
GLU
47
A
OE1
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
metalc
2.273
A
GLU
47
A
OE2
GLU
47
1_555
A
CA
130
C
CA
CA
1_555
metalc
2.420
A
GLU
128
A
OE2
GLU
128
1_555
A
CA
130
C
CA
CA
1_555
metalc
2.313
B
SER
41
B
O
SER
41
1_555
B
CA
124
D
CA
CA
1_555
metalc
2.437
B
SER
41
B
OG
SER
41
1_555
B
CA
124
D
CA
CA
1_555
metalc
2.328
B
GLN
43
B
OE1
GLN
43
1_555
B
CA
124
D
CA
CA
1_555
metalc
2.388
B
GLU
47
B
OE2
GLU
47
1_555
B
CA
124
D
CA
CA
1_555
metalc
2.608
B
GLU
120
B
OE2
GLU
120
1_555
B
CA
124
D
CA
CA
1_555
metalc
2.514
A
CA
130
C
CA
CA
1_555
A
HOH
171
E
O
HOH
1_555
metalc
2.175
A
CA
130
C
CA
CA
1_555
A
HOH
170
E
O
HOH
1_555
metalc
2.219
B
CA
124
D
CA
CA
1_555
B
HOH
162
F
O
HOH
1_555
metalc
2.323
B
CA
124
D
CA
CA
1_555
B
HOH
157
F
O
HOH
1_555
metalc
3.275
A
CA
130
C
CA
CA
1_555
A
GLU
128
A
OE1
GLU
128
1_555
COLLAGEN BINDING PROTEIN
COAGULATION FACTOR IX-BINDING, HETERODIMER, VENOM, HABU SNAKE, C-TYPE LECTIN SUPERFAMILY, COLLAGEN BINDING PROTEIN
JC4329
PIR
1
JC4329
IXB_TRIFL
UNP
2
P23807
1
129
1BJ3
1
129
JC4329
A
1
1
129
24
146
1BJ3
1
123
P23807
B
2
1
123
2
3
2
3
A
HIS
12
A
HIS
12
A
LEU
19
A
LEU
19
A
ASN
123
A
ASN
123
A
ALA
129
A
ALA
129
A
VAL
66
A
VAL
66
A
ARG
71
A
ARG
71
A
CYS
102
A
CYS
102
A
LEU
105
A
LEU
105
A
TRP
114
A
TRP
114
A
TYR
118
A
TYR
118
B
HIS
12
B
HIS
12
B
GLU
19
B
GLU
19
B
ALA
115
B
ALA
115
B
ALA
123
B
ALA
123
B
PHE
64
B
PHE
64
B
SER
69
B
SER
69
B
CYS
96
B
CYS
96
B
PHE
99
B
PHE
99
B
TRP
106
B
TRP
106
B
ALA
110
B
ALA
110
BINDING SITE FOR RESIDUE CA A 130
Software
6
BINDING SITE FOR RESIDUE CA B 124
Software
6
A
SER
41
A
SER
41
6
1_555
A
GLU
43
A
GLU
43
6
1_555
A
GLU
47
A
GLU
47
6
1_555
A
GLU
128
A
GLU
128
6
1_555
A
HOH
170
E
HOH
6
1_555
A
HOH
171
E
HOH
6
1_555
B
SER
41
B
SER
41
6
1_555
B
GLN
43
B
GLN
43
6
1_555
B
GLU
47
B
GLU
47
6
1_555
B
GLU
120
B
GLU
120
6
1_555
B
HOH
157
F
HOH
6
1_555
B
HOH
162
F
HOH
6
1_555
4
P 1 21 1