1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Allawi, H.T. Santalucia Junior, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 26 4925 4934 10.1093/nar/26.21.4925 9776755 NMR solution structure of a DNA dodecamer containing single G*T mismatches. 1998 10.2210/pdb1bjd/pdb pdb_00001bjd 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3678.403 DNA (5'-D(*CP*GP*TP*GP*AP*CP*GP*TP*TP*AP*CP*G)-3') 2 syn polymer no no (DC)(DG)(DT)(DG)(DA)(DC)(DG)(DT)(DT)(DA)(DC)(DG) CGTGACGTTACG A,B polydeoxyribonucleotide n n n n n n n n n n n n -14.764 1 19 A 1 B 12 -1.532 A_DC1:DG12_B 1 6.265 0.686 0.262 -0.428 -1.817 1 19 A 2 B 11 0.111 A_DG2:DC11_B 2 -9.346 -0.789 0.071 -0.447 4.693 1 20 A 3 B 10 0.971 A_DT3:DA10_B 3 -13.130 0.046 0.017 -0.293 -1.688 28 A 4 B 9 -0.584 A_DG4:DT9_B 4 -12.550 -2.590 -0.135 -0.786 1.127 1 20 A 5 B 8 -4.486 A_DA5:DT8_B 5 -17.147 0.024 0.093 -0.305 5.070 1 19 A 6 B 7 -0.739 A_DC6:DG7_B 6 -15.968 0.753 -0.013 -0.469 -5.069 1 19 A 7 B 6 -0.751 A_DG7:DC6_B 7 -15.963 -0.753 -0.012 -0.469 -1.122 1 20 A 8 B 5 -4.483 A_DT8:DA5_B 8 -17.138 -0.024 0.094 -0.304 1.673 28 A 9 B 4 -0.587 A_DT9:DG4_B 9 -12.556 2.591 -0.136 -0.786 -4.685 1 20 A 10 B 3 0.965 A_DA10:DT3_B 10 -13.153 -0.046 0.017 -0.293 1.813 1 19 A 11 B 2 0.107 A_DC11:DG2_B 11 -9.319 0.789 0.070 -0.447 14.761 1 19 A 12 B 1 -1.536 A_DG12:DC1_B 12 6.244 -0.686 0.262 -0.428 2.925 38.602 A A 1 2 -6.784 B B 12 11 3.017 -4.463 -0.050 0.380 AA_DC1DG2:DC11DG12_BB 1 5.050 -7.676 38.031 1.079 0.645 2.956 38.886 A A 2 3 -1.553 B B 11 10 2.966 -1.034 0.165 0.490 AA_DG2DT3:DA10DC11_BB 2 1.452 -2.182 38.847 0.849 -0.089 2.871 34.190 A A 3 4 19.359 B B 10 9 2.963 11.181 0.113 0.215 AA_DT3DG4:DT9DA10_BB 3 -1.314 2.275 32.335 -1.257 -0.383 3.121 52.744 A A 4 5 -0.037 B B 9 8 3.082 -0.033 -0.611 0.891 AA_DG4DA5:DT8DT9_BB 4 -4.598 5.182 52.558 1.004 0.404 2.962 42.900 A A 5 6 -6.470 B B 8 7 3.037 -4.724 0.088 0.557 AA_DA5DC6:DG7DT8_BB 5 0.225 -0.308 42.651 1.193 -0.100 3.200 36.289 A A 6 7 16.144 B B 7 6 3.257 9.935 0.000 0.224 AA_DC6DG7:DC6DG7_BB 6 -0.007 0.011 34.947 -1.040 -0.001 2.962 42.892 A A 7 8 -6.457 B B 6 5 3.037 -4.713 -0.088 0.556 AA_DG7DT8:DA5DC6_BB 7 -0.219 0.300 42.644 1.192 0.100 3.121 52.755 A A 8 9 -0.059 B B 5 4 3.082 -0.053 0.611 0.891 AA_DT8DT9:DG4DA5_BB 8 4.599 -5.182 52.568 1.006 -0.405 2.870 34.194 A A 9 10 19.388 B B 4 3 2.962 11.199 -0.113 0.214 AA_DT9DA10:DT3DG4_BB 9 1.316 -2.278 32.334 -1.259 0.384 2.957 38.884 A A 10 11 -1.584 B B 3 2 2.966 -1.054 -0.165 0.490 AA_DA10DC11:DG2DT3_BB 10 -1.448 2.176 38.844 0.852 0.089 2.925 38.603 A A 11 12 -6.762 B B 2 1 3.016 -4.449 0.050 0.380 AA_DC11DG12:DC1DG2_BB 11 -5.050 7.675 38.034 1.076 -0.646 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1999-01-13 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1998-06-24 REL MEAN STRUCTURE. STRUCTURE WAS DETERMINED USING RELAXATION MATRIX ANALYSIS OF NOE DATA. 1 1 NOESY COSY HETCOR 7 298 K RESTRAINED DISTANCES AND DIHEDRAL ANGLES RESTRAINED MOLECULAR DYNAMICS 13 WATER BRUNGER refinement X-PLOR structure solution VNMR FELIX FELIX 500 Varian UNITY C 1 n 1 DC 1 A G 2 n 2 DG 2 A T 3 n 3 DT 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A C 6 n 6 DC 6 A G 7 n 7 DG 7 A T 8 n 8 DT 8 A T 9 n 9 DT 9 A A 10 n 10 DA 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 1 n 1 DC 1 B G 2 n 2 DG 2 B T 3 n 3 DT 3 B G 4 n 4 DG 4 B A 5 n 5 DA 5 B C 6 n 6 DC 6 B G 7 n 7 DG 7 B T 8 n 8 DT 8 B T 9 n 9 DT 9 B A 10 n 10 DA 10 B C 11 n 11 DC 11 B G 12 n 12 DG 12 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 6.10 0.90 103.10 109.20 A A A C4' C3' C2' DC DC DC 1 1 1 N 1 5.59 0.90 103.10 108.69 A A A C4' C3' C2' DG DG DG 2 2 2 N 1 5.50 0.90 103.10 108.60 A A A C4' C3' C2' DT DT DT 3 3 3 N 1 5.75 0.90 103.10 108.85 A A A C4' C3' C2' DA DA DA 5 5 5 N 1 5.79 0.90 103.10 108.89 A A A C4' C3' C2' DC DC DC 6 6 6 N 1 5.75 0.90 103.10 108.85 A A A C4' C3' C2' DG DG DG 7 7 7 N 1 5.61 0.90 103.10 108.71 A A A C4' C3' C2' DT DT DT 8 8 8 N 1 5.75 0.90 103.10 108.85 A A A C4' C3' C2' DT DT DT 9 9 9 N 1 5.61 0.90 103.10 108.71 A A A C4' C3' C2' DA DA DA 10 10 10 N 1 5.51 0.90 103.10 108.61 A A A C4' C3' C2' DC DC DC 11 11 11 N 1 6.08 0.90 103.10 109.18 B B B C4' C3' C2' DC DC DC 1 1 1 N 1 5.56 0.90 103.10 108.66 B B B C4' C3' C2' DG DG DG 2 2 2 N 1 5.49 0.90 103.10 108.59 B B B C4' C3' C2' DT DT DT 3 3 3 N 1 5.74 0.90 103.10 108.84 B B B C4' C3' C2' DA DA DA 5 5 5 N 1 5.76 0.90 103.10 108.86 B B B C4' C3' C2' DC DC DC 6 6 6 N 1 5.71 0.90 103.10 108.81 B B B C4' C3' C2' DG DG DG 7 7 7 N 1 5.62 0.90 103.10 108.72 B B B C4' C3' C2' DT DT DT 8 8 8 N 1 5.72 0.90 103.10 108.82 B B B C4' C3' C2' DT DT DT 9 9 9 N 1 5.61 0.90 103.10 108.71 B B B C4' C3' C2' DA DA DA 10 10 10 N 1 5.46 0.90 103.10 108.56 B B B C4' C3' C2' DC DC DC 11 11 11 N model building VNMR model building X-PLOR refinement X-PLOR phasing VNMR phasing X-PLOR SOLUTION STRUCTURE OF A DNA DODECAMER CONTAINING SINGLE G*T MISMATCHES USING RELAXATION MATRIX ANALYSIS AND RESTRAINED MOLECULAR DYNAMICS, NMR, 1 STRUCTURE 1 N N 1 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 12 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 12 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 12 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 11 1_555 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 B DA 10 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 B DA 10 B N6 DA 10 1_555 hydrog TYPE_28_PAIR A DG 4 A N1 DG 4 1_555 B DT 9 B O2 DT 9 1_555 hydrog TYPE_28_PAIR A DG 4 A O6 DG 4 1_555 B DT 9 B N3 DT 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 8 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 8 B O4 DT 8 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 7 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 7 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 7 B N2 DG 7 1_555 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 B DC 6 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 B DC 6 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 B DC 6 B N4 DC 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 5 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 5 B N6 DA 5 1_555 hydrog TYPE_28_PAIR A DT 9 A N3 DT 9 1_555 B DG 4 B O6 DG 4 1_555 hydrog TYPE_28_PAIR A DT 9 A O2 DT 9 1_555 B DG 4 B N1 DG 4 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 B DT 3 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 B DT 3 B O4 DT 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 2 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 2 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 2 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 1 B N4 DC 1 1_555 DNA DEOXYRIBONUCLEIC ACID, DNA, G*T MISMATCH 1BJD PDB 1 1BJD 1 12 1BJD 1 12 1BJD A 1 1 12 1 12 1BJD 1 12 1BJD B 1 1 12 1 P 1