1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Allawi, H.T.
Santalucia Junior, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
26
4925
4934
10.1093/nar/26.21.4925
9776755
NMR solution structure of a DNA dodecamer containing single G*T mismatches.
1998
10.2210/pdb1bjd/pdb
pdb_00001bjd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3678.403
DNA (5'-D(*CP*GP*TP*GP*AP*CP*GP*TP*TP*AP*CP*G)-3')
2
syn
polymer
no
no
(DC)(DG)(DT)(DG)(DA)(DC)(DG)(DT)(DT)(DA)(DC)(DG)
CGTGACGTTACG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
-14.764
1
19
A
1
B
12
-1.532
A_DC1:DG12_B
1
6.265
0.686
0.262
-0.428
-1.817
1
19
A
2
B
11
0.111
A_DG2:DC11_B
2
-9.346
-0.789
0.071
-0.447
4.693
1
20
A
3
B
10
0.971
A_DT3:DA10_B
3
-13.130
0.046
0.017
-0.293
-1.688
28
A
4
B
9
-0.584
A_DG4:DT9_B
4
-12.550
-2.590
-0.135
-0.786
1.127
1
20
A
5
B
8
-4.486
A_DA5:DT8_B
5
-17.147
0.024
0.093
-0.305
5.070
1
19
A
6
B
7
-0.739
A_DC6:DG7_B
6
-15.968
0.753
-0.013
-0.469
-5.069
1
19
A
7
B
6
-0.751
A_DG7:DC6_B
7
-15.963
-0.753
-0.012
-0.469
-1.122
1
20
A
8
B
5
-4.483
A_DT8:DA5_B
8
-17.138
-0.024
0.094
-0.304
1.673
28
A
9
B
4
-0.587
A_DT9:DG4_B
9
-12.556
2.591
-0.136
-0.786
-4.685
1
20
A
10
B
3
0.965
A_DA10:DT3_B
10
-13.153
-0.046
0.017
-0.293
1.813
1
19
A
11
B
2
0.107
A_DC11:DG2_B
11
-9.319
0.789
0.070
-0.447
14.761
1
19
A
12
B
1
-1.536
A_DG12:DC1_B
12
6.244
-0.686
0.262
-0.428
2.925
38.602
A
A
1
2
-6.784
B
B
12
11
3.017
-4.463
-0.050
0.380
AA_DC1DG2:DC11DG12_BB
1
5.050
-7.676
38.031
1.079
0.645
2.956
38.886
A
A
2
3
-1.553
B
B
11
10
2.966
-1.034
0.165
0.490
AA_DG2DT3:DA10DC11_BB
2
1.452
-2.182
38.847
0.849
-0.089
2.871
34.190
A
A
3
4
19.359
B
B
10
9
2.963
11.181
0.113
0.215
AA_DT3DG4:DT9DA10_BB
3
-1.314
2.275
32.335
-1.257
-0.383
3.121
52.744
A
A
4
5
-0.037
B
B
9
8
3.082
-0.033
-0.611
0.891
AA_DG4DA5:DT8DT9_BB
4
-4.598
5.182
52.558
1.004
0.404
2.962
42.900
A
A
5
6
-6.470
B
B
8
7
3.037
-4.724
0.088
0.557
AA_DA5DC6:DG7DT8_BB
5
0.225
-0.308
42.651
1.193
-0.100
3.200
36.289
A
A
6
7
16.144
B
B
7
6
3.257
9.935
0.000
0.224
AA_DC6DG7:DC6DG7_BB
6
-0.007
0.011
34.947
-1.040
-0.001
2.962
42.892
A
A
7
8
-6.457
B
B
6
5
3.037
-4.713
-0.088
0.556
AA_DG7DT8:DA5DC6_BB
7
-0.219
0.300
42.644
1.192
0.100
3.121
52.755
A
A
8
9
-0.059
B
B
5
4
3.082
-0.053
0.611
0.891
AA_DT8DT9:DG4DA5_BB
8
4.599
-5.182
52.568
1.006
-0.405
2.870
34.194
A
A
9
10
19.388
B
B
4
3
2.962
11.199
-0.113
0.214
AA_DT9DA10:DT3DG4_BB
9
1.316
-2.278
32.334
-1.259
0.384
2.957
38.884
A
A
10
11
-1.584
B
B
3
2
2.966
-1.054
-0.165
0.490
AA_DA10DC11:DG2DT3_BB
10
-1.448
2.176
38.844
0.852
0.089
2.925
38.603
A
A
11
12
-6.762
B
B
2
1
3.016
-4.449
0.050
0.380
AA_DC11DG12:DC1DG2_BB
11
-5.050
7.675
38.034
1.076
-0.646
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1999-01-13
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1998-06-24
REL
MEAN STRUCTURE. STRUCTURE WAS DETERMINED USING RELAXATION MATRIX ANALYSIS OF NOE DATA.
1
1
NOESY
COSY
HETCOR
7
298
K
RESTRAINED DISTANCES AND DIHEDRAL ANGLES
RESTRAINED MOLECULAR DYNAMICS
13
WATER
BRUNGER
refinement
X-PLOR
structure solution
VNMR FELIX
FELIX
500
Varian
UNITY
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
C
6
n
6
DC
6
A
G
7
n
7
DG
7
A
T
8
n
8
DT
8
A
T
9
n
9
DT
9
A
A
10
n
10
DA
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
1
n
1
DC
1
B
G
2
n
2
DG
2
B
T
3
n
3
DT
3
B
G
4
n
4
DG
4
B
A
5
n
5
DA
5
B
C
6
n
6
DC
6
B
G
7
n
7
DG
7
B
T
8
n
8
DT
8
B
T
9
n
9
DT
9
B
A
10
n
10
DA
10
B
C
11
n
11
DC
11
B
G
12
n
12
DG
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
6.10
0.90
103.10
109.20
A
A
A
C4'
C3'
C2'
DC
DC
DC
1
1
1
N
1
5.59
0.90
103.10
108.69
A
A
A
C4'
C3'
C2'
DG
DG
DG
2
2
2
N
1
5.50
0.90
103.10
108.60
A
A
A
C4'
C3'
C2'
DT
DT
DT
3
3
3
N
1
5.75
0.90
103.10
108.85
A
A
A
C4'
C3'
C2'
DA
DA
DA
5
5
5
N
1
5.79
0.90
103.10
108.89
A
A
A
C4'
C3'
C2'
DC
DC
DC
6
6
6
N
1
5.75
0.90
103.10
108.85
A
A
A
C4'
C3'
C2'
DG
DG
DG
7
7
7
N
1
5.61
0.90
103.10
108.71
A
A
A
C4'
C3'
C2'
DT
DT
DT
8
8
8
N
1
5.75
0.90
103.10
108.85
A
A
A
C4'
C3'
C2'
DT
DT
DT
9
9
9
N
1
5.61
0.90
103.10
108.71
A
A
A
C4'
C3'
C2'
DA
DA
DA
10
10
10
N
1
5.51
0.90
103.10
108.61
A
A
A
C4'
C3'
C2'
DC
DC
DC
11
11
11
N
1
6.08
0.90
103.10
109.18
B
B
B
C4'
C3'
C2'
DC
DC
DC
1
1
1
N
1
5.56
0.90
103.10
108.66
B
B
B
C4'
C3'
C2'
DG
DG
DG
2
2
2
N
1
5.49
0.90
103.10
108.59
B
B
B
C4'
C3'
C2'
DT
DT
DT
3
3
3
N
1
5.74
0.90
103.10
108.84
B
B
B
C4'
C3'
C2'
DA
DA
DA
5
5
5
N
1
5.76
0.90
103.10
108.86
B
B
B
C4'
C3'
C2'
DC
DC
DC
6
6
6
N
1
5.71
0.90
103.10
108.81
B
B
B
C4'
C3'
C2'
DG
DG
DG
7
7
7
N
1
5.62
0.90
103.10
108.72
B
B
B
C4'
C3'
C2'
DT
DT
DT
8
8
8
N
1
5.72
0.90
103.10
108.82
B
B
B
C4'
C3'
C2'
DT
DT
DT
9
9
9
N
1
5.61
0.90
103.10
108.71
B
B
B
C4'
C3'
C2'
DA
DA
DA
10
10
10
N
1
5.46
0.90
103.10
108.56
B
B
B
C4'
C3'
C2'
DC
DC
DC
11
11
11
N
model building
VNMR
model building
X-PLOR
refinement
X-PLOR
phasing
VNMR
phasing
X-PLOR
SOLUTION STRUCTURE OF A DNA DODECAMER CONTAINING SINGLE G*T MISMATCHES USING RELAXATION MATRIX ANALYSIS AND RESTRAINED MOLECULAR DYNAMICS, NMR, 1 STRUCTURE
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
10
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
10
B
N6
DA
10
1_555
hydrog
TYPE_28_PAIR
A
DG
4
A
N1
DG
4
1_555
B
DT
9
B
O2
DT
9
1_555
hydrog
TYPE_28_PAIR
A
DG
4
A
O6
DG
4
1_555
B
DT
9
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
DC
6
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
DC
6
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
DC
6
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
5
B
N6
DA
5
1_555
hydrog
TYPE_28_PAIR
A
DT
9
A
N3
DT
9
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
TYPE_28_PAIR
A
DT
9
A
O2
DT
9
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N1
DA
10
1_555
B
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N6
DA
10
1_555
B
DT
3
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
2
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
2
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
2
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
1
B
N4
DC
1
1_555
DNA
DEOXYRIBONUCLEIC ACID, DNA, G*T MISMATCH
1BJD
PDB
1
1BJD
1
12
1BJD
1
12
1BJD
A
1
1
12
1
12
1BJD
1
12
1BJD
B
1
1
12
1
P 1