1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Clish, C.B.
Peyton, D.H.
Barklis, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
257
69
77
10.1046/j.1432-1327.1998.2570069.x
9799104
Solution structures of human immunodeficiency virus type 1 (HIV-1) and moloney murine leukemia virus (MoMLV) capsid protein major-homology-region peptide analogs by NMR spectroscopy.
1998
10.2210/pdb1bmx/pdb
pdb_00001bmx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3709.194
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID
MAJOR HOMOLOGY REGION PEPTIDE, N-TERMINAL CYS
N-TERMINAL CYS
1
man
polymer
HIV-1 P24 MHR PEPTIDE ANALOG
no
no
CSILDIRQGPKEPFRDYVDRFYKTLRAEQAS
CSILDIRQGPKEPFRDYVDRFYKTLRAEQAS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
11676
Human immunodeficiency virus 1
562
Escherichia coli
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1999-01-06
1
1
2008-03-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
Y
BNL
1998-07-27
REL
REL
THE STUCTURE WAS DETERMINED WITH 2D-1H-NMR AND A SYNTHETIC PEPTIDE (5-7 MILLIMOLAR)
LEAST RESTRAINT VIOLOATION
50
8
NOESY
COSY
TOCSY
3.1
298
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE
distance geometry
90/10 H20/D20 50% TFE
BIOSYM
refinement
Discover
structure solution
BIOSYM FELIX
FELIX
structure solution
FELIX ASSIGN
ASSIGN
structure solution
DGII
structure solution
Discover
400
Bruker
AMX400
CYS
1
n
1
CYS
1
A
SER
2
n
2
SER
2
A
ILE
3
n
3
ILE
3
A
LEU
4
n
4
LEU
4
A
ASP
5
n
5
ASP
5
A
ILE
6
n
6
ILE
6
A
ARG
7
n
7
ARG
7
A
GLN
8
n
8
GLN
8
A
GLY
9
n
9
GLY
9
A
PRO
10
n
10
PRO
10
A
LYS
11
n
11
LYS
11
A
GLU
12
n
12
GLU
12
A
PRO
13
n
13
PRO
13
A
PHE
14
n
14
PHE
14
A
ARG
15
n
15
ARG
15
A
ASP
16
n
16
ASP
16
A
TYR
17
n
17
TYR
17
A
VAL
18
n
18
VAL
18
A
ASP
19
n
19
ASP
19
A
ARG
20
n
20
ARG
20
A
PHE
21
n
21
PHE
21
A
TYR
22
n
22
TYR
22
A
LYS
23
n
23
LYS
23
A
THR
24
n
24
THR
24
A
LEU
25
n
25
LEU
25
A
ARG
26
n
26
ARG
26
A
ALA
27
n
27
ALA
27
A
GLU
28
n
28
GLU
28
A
GLN
29
n
29
GLN
29
A
ALA
30
n
30
ALA
30
A
SER
31
n
31
SER
31
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
HG1
ARG
THR
20
24
1.55
2
A
A
O
HXT
ALA
SER
30
31
1.52
2
A
A
O
HG1
ARG
THR
20
24
1.59
3
A
A
O
HG1
ARG
THR
20
24
1.56
4
A
A
O
HG1
ARG
THR
20
24
1.54
4
A
A
O
HG
ALA
SER
27
31
1.56
5
A
A
O
HG1
ARG
THR
20
24
1.55
6
A
A
O
HG1
ARG
THR
20
24
1.57
6
A
A
O
HG
ALA
SER
27
31
1.58
6
A
A
O
HXT
ALA
SER
30
31
1.58
7
A
A
O
HG1
ARG
THR
20
24
1.54
7
A
A
O
HG
ALA
SER
30
31
1.60
8
A
A
O
HG1
ARG
THR
20
24
1.54
1
A
A
ARG
ASP
15
16
145.94
1
A
A
ARG
ALA
26
27
138.43
2
A
A
ARG
ALA
26
27
133.16
3
A
A
PHE
ARG
14
15
148.10
3
A
A
ARG
ALA
26
27
143.29
4
A
A
ARG
ASP
15
16
147.85
5
A
A
ARG
ASP
15
16
141.44
6
A
A
ARG
ASP
15
16
144.45
7
A
A
ARG
ASP
15
16
141.29
7
A
A
ARG
ALA
26
27
140.14
8
A
A
ARG
ALA
26
27
137.44
1
A
TYR
17
0.079
SIDE CHAIN
2
A
TYR
17
0.077
SIDE CHAIN
3
A
TYR
17
0.080
SIDE CHAIN
4
A
TYR
17
0.087
SIDE CHAIN
6
A
TYR
17
0.101
SIDE CHAIN
7
A
TYR
17
0.079
SIDE CHAIN
1
5.71
0.90
118.30
124.01
A
A
A
CB
CG
OD1
ASP
ASP
ASP
5
5
5
N
1
-5.90
0.90
118.30
112.40
A
A
A
CB
CG
OD2
ASP
ASP
ASP
5
5
5
N
1
3.43
0.50
120.30
123.73
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
7
7
7
N
1
3.48
0.50
120.30
123.78
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
1
5.57
0.90
118.30
123.87
A
A
A
CB
CG
OD1
ASP
ASP
ASP
16
16
16
N
1
-6.18
0.90
118.30
112.12
A
A
A
CB
CG
OD2
ASP
ASP
ASP
16
16
16
N
1
5.70
0.90
118.30
124.00
A
A
A
CB
CG
OD1
ASP
ASP
ASP
19
19
19
N
1
-6.09
0.90
118.30
112.21
A
A
A
CB
CG
OD2
ASP
ASP
ASP
19
19
19
N
1
-12.71
1.80
110.60
97.89
A
A
A
N
CA
CB
ARG
ARG
ARG
20
20
20
N
1
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
1
3.57
0.50
120.30
123.87
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
2
-5.79
0.90
118.30
112.51
A
A
A
CB
CG
OD2
ASP
ASP
ASP
5
5
5
N
2
3.51
0.50
120.30
123.81
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
7
7
7
N
2
3.92
0.50
120.30
124.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
2
-5.86
0.90
118.30
112.44
A
A
A
CB
CG
OD2
ASP
ASP
ASP
16
16
16
N
2
5.61
0.90
118.30
123.91
A
A
A
CB
CG
OD1
ASP
ASP
ASP
19
19
19
N
2
-5.99
0.90
118.30
112.31
A
A
A
CB
CG
OD2
ASP
ASP
ASP
19
19
19
N
2
-12.46
1.80
110.60
98.14
A
A
A
N
CA
CB
ARG
ARG
ARG
20
20
20
N
2
3.88
0.50
120.30
124.18
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
2
3.34
0.50
120.30
123.64
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
3
5.49
0.90
118.30
123.79
A
A
A
CB
CG
OD1
ASP
ASP
ASP
5
5
5
N
3
-5.86
0.90
118.30
112.44
A
A
A
CB
CG
OD2
ASP
ASP
ASP
5
5
5
N
3
3.37
0.50
120.30
123.67
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
7
7
7
N
3
3.82
0.50
120.30
124.12
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
3
5.62
0.90
118.30
123.92
A
A
A
CB
CG
OD1
ASP
ASP
ASP
16
16
16
N
3
-6.04
0.90
118.30
112.26
A
A
A
CB
CG
OD2
ASP
ASP
ASP
16
16
16
N
3
-5.82
0.90
118.30
112.48
A
A
A
CB
CG
OD2
ASP
ASP
ASP
19
19
19
N
3
-11.74
1.80
110.60
98.86
A
A
A
N
CA
CB
ARG
ARG
ARG
20
20
20
N
3
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
3
4.20
0.50
120.30
124.50
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
4
-5.91
0.90
118.30
112.39
A
A
A
CB
CG
OD2
ASP
ASP
ASP
5
5
5
N
4
3.44
0.50
120.30
123.74
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
7
7
7
N
4
3.91
0.50
120.30
124.21
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
4
-5.65
0.90
118.30
112.65
A
A
A
CB
CG
OD2
ASP
ASP
ASP
16
16
16
N
4
5.50
0.90
118.30
123.80
A
A
A
CB
CG
OD1
ASP
ASP
ASP
19
19
19
N
4
-5.88
0.90
118.30
112.42
A
A
A
CB
CG
OD2
ASP
ASP
ASP
19
19
19
N
4
-11.52
1.80
110.60
99.08
A
A
A
N
CA
CB
ARG
ARG
ARG
20
20
20
N
4
3.62
0.50
120.30
123.92
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
4
3.79
0.50
120.30
124.09
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
5
5.42
0.90
118.30
123.72
A
A
A
CB
CG
OD1
ASP
ASP
ASP
5
5
5
N
5
-5.75
0.90
118.30
112.55
A
A
A
CB
CG
OD2
ASP
ASP
ASP
5
5
5
N
5
3.48
0.50
120.30
123.78
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
7
7
7
N
5
3.95
0.50
120.30
124.25
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
5
5.89
0.90
118.30
124.19
A
A
A
CB
CG
OD1
ASP
ASP
ASP
16
16
16
N
5
-6.24
0.90
118.30
112.06
A
A
A
CB
CG
OD2
ASP
ASP
ASP
16
16
16
N
5
5.78
0.90
118.30
124.08
A
A
A
CB
CG
OD1
ASP
ASP
ASP
19
19
19
N
5
-6.11
0.90
118.30
112.19
A
A
A
CB
CG
OD2
ASP
ASP
ASP
19
19
19
N
5
-12.48
1.80
110.60
98.12
A
A
A
N
CA
CB
ARG
ARG
ARG
20
20
20
N
5
4.05
0.50
120.30
124.35
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
5
3.82
0.50
120.30
124.12
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
6
4.09
0.50
120.30
124.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
7
7
7
N
6
3.53
0.50
120.30
123.83
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
6
5.51
0.90
118.30
123.81
A
A
A
CB
CG
OD1
ASP
ASP
ASP
16
16
16
N
6
-5.92
0.90
118.30
112.38
A
A
A
CB
CG
OD2
ASP
ASP
ASP
16
16
16
N
6
5.40
0.90
118.30
123.70
A
A
A
CB
CG
OD1
ASP
ASP
ASP
19
19
19
N
6
-5.76
0.90
118.30
112.54
A
A
A
CB
CG
OD2
ASP
ASP
ASP
19
19
19
N
6
-12.03
1.80
110.60
98.57
A
A
A
N
CA
CB
ARG
ARG
ARG
20
20
20
N
6
3.20
0.50
120.30
123.50
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
6
3.60
0.50
120.30
123.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
7
5.68
0.90
118.30
123.98
A
A
A
CB
CG
OD1
ASP
ASP
ASP
5
5
5
N
7
-6.01
0.90
118.30
112.29
A
A
A
CB
CG
OD2
ASP
ASP
ASP
5
5
5
N
7
3.14
0.50
120.30
123.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
7
7
7
N
7
3.48
0.50
120.30
123.78
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
7
-5.97
0.90
118.30
112.33
A
A
A
CB
CG
OD2
ASP
ASP
ASP
16
16
16
N
7
5.42
0.90
118.30
123.72
A
A
A
CB
CG
OD1
ASP
ASP
ASP
19
19
19
N
7
-5.81
0.90
118.30
112.49
A
A
A
CB
CG
OD2
ASP
ASP
ASP
19
19
19
N
7
-13.30
1.80
110.60
97.30
A
A
A
N
CA
CB
ARG
ARG
ARG
20
20
20
N
7
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
7
3.51
0.50
120.30
123.81
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
8
6.38
0.90
118.30
124.68
A
A
A
CB
CG
OD1
ASP
ASP
ASP
5
5
5
N
8
-6.67
0.90
118.30
111.63
A
A
A
CB
CG
OD2
ASP
ASP
ASP
5
5
5
N
8
3.45
0.50
120.30
123.75
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
7
7
7
N
8
3.86
0.50
120.30
124.16
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
8
5.60
0.90
118.30
123.90
A
A
A
CB
CG
OD1
ASP
ASP
ASP
16
16
16
N
8
-5.94
0.90
118.30
112.36
A
A
A
CB
CG
OD2
ASP
ASP
ASP
16
16
16
N
8
5.48
0.90
118.30
123.78
A
A
A
CB
CG
OD1
ASP
ASP
ASP
19
19
19
N
8
-5.92
0.90
118.30
112.38
A
A
A
CB
CG
OD2
ASP
ASP
ASP
19
19
19
N
8
-11.39
1.80
110.60
99.21
A
A
A
N
CA
CB
ARG
ARG
ARG
20
20
20
N
8
3.30
0.50
120.30
123.60
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
8
3.15
0.50
120.30
123.45
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
1
A
A
CD
OE2
GLU
GLU
12
12
0.111
0.011
1.252
1.363
N
1
A
A
CD
OE2
GLU
GLU
28
28
0.109
0.011
1.252
1.361
N
1
A
A
C
OXT
SER
SER
31
31
0.141
0.019
1.229
1.370
N
2
A
A
CD
OE2
GLU
GLU
12
12
0.109
0.011
1.252
1.361
N
2
A
A
CD
OE2
GLU
GLU
28
28
0.110
0.011
1.252
1.362
N
2
A
A
C
OXT
SER
SER
31
31
0.142
0.019
1.229
1.371
N
3
A
A
CD
OE2
GLU
GLU
12
12
0.110
0.011
1.252
1.362
N
3
A
A
CD
OE2
GLU
GLU
28
28
0.110
0.011
1.252
1.362
N
3
A
A
C
OXT
SER
SER
31
31
0.136
0.019
1.229
1.365
N
4
A
A
CD
OE2
GLU
GLU
12
12
0.109
0.011
1.252
1.361
N
4
A
A
CD
OE2
GLU
GLU
28
28
0.110
0.011
1.252
1.362
N
4
A
A
C
OXT
SER
SER
31
31
0.135
0.019
1.229
1.364
N
5
A
A
CD
OE2
GLU
GLU
12
12
0.111
0.011
1.252
1.363
N
5
A
A
CD
OE2
GLU
GLU
28
28
0.109
0.011
1.252
1.361
N
5
A
A
C
OXT
SER
SER
31
31
0.136
0.019
1.229
1.365
N
6
A
A
CD
OE2
GLU
GLU
12
12
0.113
0.011
1.252
1.365
N
6
A
A
CD
OE2
GLU
GLU
28
28
0.111
0.011
1.252
1.363
N
6
A
A
C
OXT
SER
SER
31
31
0.144
0.019
1.229
1.373
N
7
A
A
CD
OE2
GLU
GLU
12
12
0.110
0.011
1.252
1.362
N
7
A
A
CD
OE2
GLU
GLU
28
28
0.108
0.011
1.252
1.360
N
7
A
A
C
OXT
SER
SER
31
31
0.140
0.019
1.229
1.369
N
8
A
A
CD
OE2
GLU
GLU
12
12
0.111
0.011
1.252
1.363
N
8
A
A
CD
OE2
GLU
GLU
28
28
0.109
0.011
1.252
1.361
N
8
A
A
C
OXT
SER
SER
31
31
0.133
0.019
1.229
1.362
N
1
A
SER
2
-148.84
-79.14
1
A
ASP
5
-139.43
-65.63
1
A
GLN
8
63.53
87.11
1
A
LYS
11
-134.89
-71.89
1
A
ARG
26
-83.55
31.52
1
A
ALA
30
-168.64
115.43
2
A
SER
2
-157.62
-67.27
2
A
LEU
4
-95.80
41.24
2
A
ASP
5
-153.85
-67.21
2
A
ARG
7
-170.13
-31.67
2
A
GLU
12
104.30
-55.46
2
A
ARG
26
-92.57
36.20
3
A
ASP
5
-100.35
-66.16
3
A
LYS
11
-173.67
-44.14
3
A
PHE
14
-78.49
25.96
3
A
ALA
30
72.70
84.16
4
A
SER
2
-103.39
-65.84
4
A
ASP
5
-154.48
-40.42
4
A
LYS
11
-130.26
-72.09
4
A
ARG
26
-83.20
33.98
4
A
ALA
27
-132.54
-33.74
5
A
ASP
5
-131.09
-75.42
5
A
ARG
7
-92.33
39.34
5
A
LYS
11
-138.26
-61.99
5
A
PRO
13
-86.87
-155.91
5
A
PHE
14
-154.59
57.01
5
A
ALA
30
55.95
75.76
6
A
SER
2
-117.14
-77.50
6
A
GLN
8
64.41
73.84
6
A
LYS
11
64.24
-40.68
6
A
PHE
14
46.38
1.77
7
A
LEU
4
-84.92
39.55
7
A
ARG
7
-104.34
43.60
7
A
LYS
11
-137.92
-65.89
7
A
ALA
30
66.65
-63.78
8
A
SER
2
-166.05
-104.49
8
A
ILE
3
34.98
36.80
8
A
LEU
4
38.91
43.24
8
A
ASP
5
-162.72
-58.21
8
A
GLN
8
59.42
80.57
8
A
LYS
11
-134.29
-54.54
8
A
ALA
30
65.90
-67.84
HIV-1 CAPSID PROTEIN MAJOR HOMOLOGY REGION PEPTIDE ANALOG, NMR, 8 STRUCTURES
1
Y
N
A
PHE
14
A
PHE
14
HELX_P
A
ARG
26
A
ARG
26
1
1
13
VIRAL PROTEIN
HIV, VIRAL CAPSID, P24, MHR, MAJOR HOMOLOGY REGION, Viral protein
Q76258_9HIV1
UNP
1
1
Q76258
CIQCMQGLIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPVPVGEIYKRWIIMGLNKIVKMYSPCGILDIRQGPKEPFR
DYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKA
66
96
1BMX
1
31
Q76258
A
1
1
31
1
GLY
conflict
SER
2
1BMX
A
Q76258
UNP
67
2
1
P 1