1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Castagne, C. Terenzi, H. Zakin, M.M. Delepierre, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing FR Biochimie BICMBE 0466 0300-9084 82 739 748 10.1016/S0300-9084(00)01148-2 11018291 Solution structure of the orphan nuclear receptor rev-erb beta response element by 1H, 31P NMR and molecular simulation 2000 10.2210/pdb1bn9/pdb pdb_00001bn9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4673.059 DNA (5'-D(*TP*AP*GP*AP*AP*TP*GP*TP*AP*GP*GP*TP*CP*AP*G)-3') 1 syn polymer 4503.948 DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*CP*AP*TP*TP*CP*TP*A)-3') 1 syn polymer no no (DT)(DA)(DG)(DA)(DA)(DT)(DG)(DT)(DA)(DG)(DG)(DT)(DC)(DA)(DG) TAGAATGTAGGTCAG A polydeoxyribonucleotide no no (DC)(DT)(DG)(DA)(DC)(DC)(DT)(DA)(DC)(DA)(DT)(DT)(DC)(DT)(DA) CTGACCTACATTCTA B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 5.253 1 20 A 1 B 30 -2.683 A_DT1:DA30_B 1 -5.889 -0.105 0.155 -0.008 8.743 1 20 A 2 B 29 0.430 A_DA2:DT29_B 2 -13.644 0.069 -0.015 -0.030 10.586 1 19 A 3 B 28 -1.728 A_DG3:DC28_B 3 -0.604 -0.290 0.251 -0.055 -6.501 1 20 A 4 B 27 0.878 A_DA4:DT27_B 4 -6.589 0.018 -0.111 -0.024 -1.790 1 20 A 5 B 26 -2.431 A_DA5:DT26_B 5 -12.017 0.136 0.046 -0.005 -2.597 1 20 A 6 B 25 -3.235 A_DT6:DA25_B 6 -12.922 -0.052 0.101 -0.017 3.039 1 19 A 7 B 24 -1.164 A_DG7:DC24_B 7 -4.234 -0.376 0.317 -0.091 -2.938 1 20 A 8 B 23 -2.866 A_DT8:DA23_B 8 -13.311 -0.028 0.174 -0.019 3.241 1 20 A 9 B 22 -2.832 A_DA9:DT22_B 9 -7.225 0.075 0.150 -0.012 15.196 1 19 A 10 B 21 -1.122 A_DG10:DC21_B 10 8.076 -0.285 0.277 -0.036 -4.084 1 19 A 11 B 20 -0.603 A_DG11:DC20_B 11 3.684 -0.527 -0.195 -0.117 -8.947 1 20 A 12 B 19 -2.801 A_DT12:DA19_B 12 -8.152 -0.073 -0.025 0.003 -4.939 1 19 A 13 B 18 -1.132 A_DC13:DG18_B 13 -7.036 0.346 0.214 -0.088 2.830 1 20 A 14 B 17 -4.190 A_DA14:DT17_B 14 -12.621 0.229 -0.006 0.015 12.580 1 19 A 15 B 16 -1.923 A_DG15:DC16_B 15 0.404 -0.232 0.442 -0.050 2.244 31.526 A A 1 2 27.396 B B 30 29 3.070 14.361 -0.183 -1.122 AA_DT1DA2:DT29DA30_BB 1 0.505 -0.964 28.135 -4.369 0.419 2.978 31.995 A A 2 3 12.359 B B 29 28 3.215 6.752 -0.024 -0.751 AA_DA2DG3:DC28DT29_BB 2 -3.258 5.963 31.126 -2.535 -0.521 3.294 38.314 A A 3 4 16.721 B B 28 27 3.648 10.821 0.689 -0.956 AA_DG3DA4:DT27DC28_BB 3 3.439 -5.313 36.653 -2.930 -0.581 3.196 39.590 A A 4 5 4.746 B B 27 26 3.122 3.207 -1.131 -0.071 AA_DA4DA5:DT26DT27_BB 4 -3.689 5.459 39.299 -0.469 1.251 3.334 28.281 A A 5 6 0.557 B B 26 25 3.347 0.272 -0.222 -0.938 AA_DA5DT6:DA25DT26_BB 5 0.482 -0.986 28.276 -1.985 0.568 3.057 42.276 A A 6 7 5.223 B B 25 24 3.062 3.762 0.371 0.252 AA_DT6DG7:DC24DA25_BB 6 -1.554 2.157 42.089 -0.011 -0.664 3.140 32.259 A A 7 8 16.029 B B 24 23 3.493 8.793 -0.061 -0.814 AA_DG7DT8:DA23DC24_BB 7 2.044 -3.726 31.002 -3.082 0.487 2.792 33.306 A A 8 9 11.809 B B 23 22 3.052 6.724 0.116 -1.014 AA_DT8DA9:DT22DA23_BB 8 -0.348 0.611 32.637 -2.781 -0.254 3.260 32.590 A A 9 10 -16.540 B B 22 21 3.166 -9.159 1.124 -1.021 AA_DA9DG10:DC21DT22_BB 9 -1.767 3.191 31.262 -0.219 -2.312 4.031 36.868 A A 10 11 -4.714 B B 21 20 3.929 -2.974 0.199 -1.443 AA_DG10DG11:DC20DC21_BB 10 3.551 -5.629 36.586 -1.790 0.273 3.567 37.463 A A 11 12 -2.661 B B 20 19 3.543 -1.708 -0.658 -1.114 AA_DG11DT12:DA19DC20_BB 11 1.177 -1.834 37.407 -1.491 1.192 2.897 32.811 A A 12 13 15.851 B B 19 18 3.174 8.849 0.459 -0.631 AA_DT12DC13:DG18DA19_BB 12 0.014 -0.025 31.627 -2.555 -0.811 3.061 37.720 A A 13 14 10.189 B B 18 17 3.059 6.556 -1.171 0.175 AA_DC13DA14:DT17DG18_BB 13 -0.549 0.854 37.163 -0.529 1.745 3.071 32.245 A A 14 15 -16.609 B B 17 16 3.116 -9.095 1.288 -0.680 AA_DA14DG15:DC16DT17_BB 14 -2.606 4.758 30.861 0.341 -2.767 database_2 pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection 1 0 1998-08-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y RCSB 1998-07-31 REL BEST REFINED STRUCTURE. NULL 1 1 NOESY TOCSY 7.0 303 K REFINEMENT BASED ON FACTOR R IMPROVEMENT. SEE TISNE ET AL, (1998) J.MOL.BIOL. 279, 127-142 distance geometry LAVERY, R, SKLENAR, H., ZAKREZEWSKA, K. AND PULLMAN, B. refinement PERSONAL PROGRAM (JUMNA) structure solution VNMR 5.3 500 Varian UNITY T 1 n 1 DT 1 A A 2 n 2 DA 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A A 5 n 5 DA 5 A T 6 n 6 DT 6 A G 7 n 7 DG 7 A T 8 n 8 DT 8 A A 9 n 9 DA 9 A G 10 n 10 DG 10 A G 11 n 11 DG 11 A T 12 n 12 DT 12 A C 13 n 13 DC 13 A A 14 n 14 DA 14 A G 15 n 15 DG 15 A C 16 n 1 DC 16 B T 17 n 2 DT 17 B G 18 n 3 DG 18 B A 19 n 4 DA 19 B C 20 n 5 DC 20 B C 21 n 6 DC 21 B T 22 n 7 DT 22 B A 23 n 8 DA 23 B C 24 n 9 DC 24 B A 25 n 10 DA 25 B T 26 n 11 DT 26 B T 27 n 12 DT 27 B C 28 n 13 DC 28 B T 29 n 14 DT 29 B A 30 n 15 DA 30 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A O5' DT 1 A O5' DT 1 1 Y 1 B O5' DC 16 B O5' DC 1 1 Y 1 2.49 0.30 108.30 110.79 A A A O4' C1' N1 DT DT DT 1 1 1 N 1 3.15 0.30 108.30 111.45 A A A O4' C1' N9 DA DA DA 2 2 2 N 1 3.23 0.30 108.30 111.53 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 3.33 0.30 108.30 111.63 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 2.50 0.30 108.30 110.80 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 3.61 0.30 108.30 111.91 A A A O4' C1' N1 DT DT DT 6 6 6 N 1 2.62 0.30 108.30 110.92 A A A O4' C1' N9 DG DG DG 7 7 7 N 1 3.37 0.30 108.30 111.67 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 3.08 0.30 108.30 111.38 A A A O4' C1' N9 DA DA DA 9 9 9 N 1 3.78 0.30 108.30 112.08 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 2.92 0.30 108.30 111.22 A A A O4' C1' N9 DG DG DG 11 11 11 N 1 2.67 0.30 108.30 110.97 A A A O4' C1' N1 DT DT DT 12 12 12 N 1 3.76 0.30 108.30 112.06 A A A O4' C1' N1 DC DC DC 13 13 13 N 1 2.39 0.30 108.30 110.69 A A A O4' C1' N9 DA DA DA 14 14 14 N 1 3.40 0.30 108.30 111.70 A A A O4' C1' N9 DG DG DG 15 15 15 N 1 2.78 0.30 108.30 111.08 B B B O4' C1' N1 DC DC DC 16 16 16 N 1 2.53 0.30 108.30 110.83 B B B O4' C1' N1 DT DT DT 17 17 17 N 1 2.98 0.30 108.30 111.28 B B B O4' C1' N9 DG DG DG 18 18 18 N 1 3.24 0.30 108.30 111.54 B B B O4' C1' N9 DA DA DA 19 19 19 N 1 3.44 0.30 108.30 111.74 B B B O4' C1' N1 DC DC DC 20 20 20 N 1 2.75 0.30 108.30 111.05 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 2.72 0.30 108.30 111.02 B B B O4' C1' N1 DT DT DT 22 22 22 N 1 3.06 0.30 108.30 111.36 B B B O4' C1' N9 DA DA DA 23 23 23 N 1 3.48 0.30 108.30 111.78 B B B O4' C1' N1 DC DC DC 24 24 24 N 1 2.47 0.30 108.30 110.77 B B B O4' C1' N9 DA DA DA 25 25 25 N 1 3.44 0.30 108.30 111.74 B B B O4' C1' N1 DT DT DT 26 26 26 N 1 3.24 0.30 108.30 111.54 B B B O4' C1' N1 DT DT DT 27 27 27 N 1 2.90 0.30 108.30 111.20 B B B O4' C1' N1 DC DC DC 28 28 28 N 1 3.22 0.30 108.30 111.52 B B B O4' C1' N1 DT DT DT 29 29 29 N 1 3.67 0.30 108.30 111.97 B B B O4' C1' N9 DA DA DA 30 30 30 N RESPONSE ELEMENT OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB BETA 1 N N 2 N N hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 B DA 30 B N1 DA 15 1_555 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 B DA 30 B N6 DA 15 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 29 B N3 DT 14 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 29 B O4 DT 14 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 28 B N3 DC 13 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 28 B O2 DC 13 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 28 B N4 DC 13 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 27 B N3 DT 12 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 27 B O4 DT 12 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 26 B N3 DT 11 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 26 B O4 DT 11 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 25 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 25 B N6 DA 10 1_555 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 B DC 24 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 B DC 24 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 B DC 24 B N4 DC 9 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 23 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 23 B N6 DA 8 1_555 hydrog WATSON-CRICK A DA 9 A N1 DA 9 1_555 B DT 22 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 9 A N6 DA 9 1_555 B DT 22 B O4 DT 7 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 21 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 21 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 21 B N4 DC 6 1_555 hydrog WATSON-CRICK A DG 11 A N1 DG 11 1_555 B DC 20 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 11 A N2 DG 11 1_555 B DC 20 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 11 A O6 DG 11 1_555 B DC 20 B N4 DC 5 1_555 hydrog WATSON-CRICK A DT 12 A N3 DT 12 1_555 B DA 19 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 12 A O4 DT 12 1_555 B DA 19 B N6 DA 4 1_555 hydrog WATSON-CRICK A DC 13 A N3 DC 13 1_555 B DG 18 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 13 A N4 DC 13 1_555 B DG 18 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 13 A O2 DC 13 1_555 B DG 18 B N2 DG 3 1_555 hydrog WATSON-CRICK A DA 14 A N1 DA 14 1_555 B DT 17 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 14 A N6 DA 14 1_555 B DT 17 B O4 DT 2 1_555 hydrog WATSON-CRICK A DG 15 A N1 DG 15 1_555 B DC 16 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 15 A N2 DG 15 1_555 B DC 16 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 15 A O6 DG 15 1_555 B DC 16 B N4 DC 1 1_555 DNA DNA, RESPONSE ELEMENT, ORPHAN NUCLEAR RECEPTOR 1BN9 PDB 1 1BN9 1BN9 PDB 2 1BN9 1 15 1BN9 1 15 1BN9 A 1 1 15 16 30 1BN9 16 30 1BN9 B 2 1 15 1 P 1