1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
CIS PROLINE - PRO 20
Zimmermann, G.R.
Legault, P.
Selsted, M.E.
Pardi, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
34
13663
13671
10.1021/bi00041a048
7577957
Solution structure of bovine neutrophil beta-defensin-12: the peptide fold of the beta-defensins is identical to that of the classical defensins.
1995
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
268
6641
Purification, Primary Structures, and Antibacterial Activities of Beta-Defensins, a New Family of Anti-Microbial Peptides from Bovine Neutrophils
1993
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
268
6649
Characterization of the Disulfide Motif in Bndb-12, an Antimicrobial Beta-Defensin Peptide from Bovine Neutrophils
1993
10.2210/pdb1bnb/pdb
pdb_00001bnb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4126.025
BOVINE NEUTROPHIL BETA-DEFENSIN 12
1
nat
polymer
no
no
APLSCGRNGGVCIPIRCPVPMRQIGTCFGRPVKCCRSW
APLSCGRNGGVCIPIRCPVPMRQIGTCFGRPVKCCRSW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
sample
POLYMORPHONUCLEOCYTE
9913
NEUTROPHILS
Bos taurus
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1995-10-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1995-03-08
REL
REL
20
ALA
1
n
1
ALA
1
A
PRO
2
n
2
PRO
2
A
LEU
3
n
3
LEU
3
A
SER
4
n
4
SER
4
A
CYS
5
n
5
CYS
5
A
GLY
6
n
6
GLY
6
A
ARG
7
n
7
ARG
7
A
ASN
8
n
8
ASN
8
A
GLY
9
n
9
GLY
9
A
GLY
10
n
10
GLY
10
A
VAL
11
n
11
VAL
11
A
CYS
12
n
12
CYS
12
A
ILE
13
n
13
ILE
13
A
PRO
14
n
14
PRO
14
A
ILE
15
n
15
ILE
15
A
ARG
16
n
16
ARG
16
A
CYS
17
n
17
CYS
17
A
PRO
18
n
18
PRO
18
A
VAL
19
n
19
VAL
19
A
PRO
20
n
20
PRO
20
A
MET
21
n
21
MET
21
A
ARG
22
n
22
ARG
22
A
GLN
23
n
23
GLN
23
A
ILE
24
n
24
ILE
24
A
GLY
25
n
25
GLY
25
A
THR
26
n
26
THR
26
A
CYS
27
n
27
CYS
27
A
PHE
28
n
28
PHE
28
A
GLY
29
n
29
GLY
29
A
ARG
30
n
30
ARG
30
A
PRO
31
n
31
PRO
31
A
VAL
32
n
32
VAL
32
A
LYS
33
n
33
LYS
33
A
CYS
34
n
34
CYS
34
A
CYS
35
n
35
CYS
35
A
ARG
36
n
36
ARG
36
A
SER
37
n
37
SER
37
A
TRP
38
n
38
TRP
38
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
11
A
O
VAL
11
A
N
CYS
35
A
N
CYS
35
A
O
VAL
32
A
O
VAL
32
A
N
CYS
27
A
N
CYS
27
1
A
ARG
7
0.284
SIDE CHAIN
1
A
ARG
16
0.291
SIDE CHAIN
1
A
ARG
22
0.319
SIDE CHAIN
1
A
ARG
30
0.298
SIDE CHAIN
1
A
ARG
36
0.127
SIDE CHAIN
2
A
ARG
7
0.306
SIDE CHAIN
2
A
ARG
16
0.318
SIDE CHAIN
2
A
ARG
22
0.226
SIDE CHAIN
2
A
ARG
30
0.312
SIDE CHAIN
2
A
ARG
36
0.230
SIDE CHAIN
3
A
ARG
7
0.305
SIDE CHAIN
3
A
ARG
16
0.319
SIDE CHAIN
3
A
ARG
22
0.318
SIDE CHAIN
3
A
ARG
30
0.294
SIDE CHAIN
3
A
ARG
36
0.272
SIDE CHAIN
4
A
ARG
7
0.309
SIDE CHAIN
4
A
ARG
16
0.319
SIDE CHAIN
4
A
ARG
22
0.292
SIDE CHAIN
4
A
ARG
30
0.305
SIDE CHAIN
4
A
ARG
36
0.287
SIDE CHAIN
5
A
ARG
7
0.275
SIDE CHAIN
5
A
ARG
16
0.317
SIDE CHAIN
5
A
ARG
22
0.275
SIDE CHAIN
5
A
ARG
30
0.302
SIDE CHAIN
5
A
ARG
36
0.319
SIDE CHAIN
6
A
ARG
7
0.303
SIDE CHAIN
6
A
ARG
16
0.298
SIDE CHAIN
6
A
ARG
22
0.319
SIDE CHAIN
6
A
ARG
30
0.283
SIDE CHAIN
6
A
ARG
36
0.185
SIDE CHAIN
7
A
ARG
7
0.319
SIDE CHAIN
7
A
ARG
16
0.285
SIDE CHAIN
7
A
ARG
22
0.257
SIDE CHAIN
7
A
ARG
30
0.307
SIDE CHAIN
7
A
ARG
36
0.313
SIDE CHAIN
8
A
ARG
7
0.309
SIDE CHAIN
8
A
ARG
16
0.303
SIDE CHAIN
8
A
ARG
22
0.310
SIDE CHAIN
8
A
ARG
30
0.305
SIDE CHAIN
8
A
ARG
36
0.174
SIDE CHAIN
9
A
ARG
7
0.314
SIDE CHAIN
9
A
ARG
16
0.319
SIDE CHAIN
9
A
ARG
22
0.304
SIDE CHAIN
9
A
ARG
30
0.316
SIDE CHAIN
10
A
ARG
7
0.261
SIDE CHAIN
10
A
ARG
16
0.321
SIDE CHAIN
10
A
ARG
22
0.220
SIDE CHAIN
10
A
ARG
30
0.300
SIDE CHAIN
10
A
ARG
36
0.150
SIDE CHAIN
11
A
ARG
7
0.293
SIDE CHAIN
11
A
ARG
16
0.307
SIDE CHAIN
11
A
ARG
22
0.313
SIDE CHAIN
11
A
ARG
30
0.316
SIDE CHAIN
11
A
ARG
36
0.320
SIDE CHAIN
12
A
ARG
7
0.299
SIDE CHAIN
12
A
ARG
16
0.316
SIDE CHAIN
12
A
ARG
22
0.241
SIDE CHAIN
12
A
ARG
30
0.313
SIDE CHAIN
12
A
ARG
36
0.318
SIDE CHAIN
13
A
ARG
7
0.317
SIDE CHAIN
13
A
ARG
16
0.313
SIDE CHAIN
13
A
ARG
22
0.315
SIDE CHAIN
13
A
ARG
30
0.317
SIDE CHAIN
13
A
ARG
36
0.304
SIDE CHAIN
14
A
ARG
7
0.275
SIDE CHAIN
14
A
ARG
16
0.320
SIDE CHAIN
14
A
ARG
22
0.313
SIDE CHAIN
14
A
ARG
30
0.307
SIDE CHAIN
15
A
ARG
7
0.314
SIDE CHAIN
15
A
ARG
16
0.307
SIDE CHAIN
15
A
ARG
22
0.319
SIDE CHAIN
15
A
ARG
30
0.308
SIDE CHAIN
15
A
ARG
36
0.143
SIDE CHAIN
16
A
ARG
7
0.287
SIDE CHAIN
16
A
ARG
16
0.320
SIDE CHAIN
16
A
ARG
22
0.312
SIDE CHAIN
16
A
ARG
30
0.319
SIDE CHAIN
16
A
ARG
36
0.314
SIDE CHAIN
17
A
ARG
7
0.298
SIDE CHAIN
17
A
ARG
16
0.318
SIDE CHAIN
17
A
ARG
22
0.308
SIDE CHAIN
17
A
ARG
30
0.239
SIDE CHAIN
17
A
ARG
36
0.178
SIDE CHAIN
18
A
ARG
7
0.279
SIDE CHAIN
18
A
ARG
16
0.316
SIDE CHAIN
18
A
ARG
22
0.252
SIDE CHAIN
18
A
ARG
30
0.316
SIDE CHAIN
18
A
ARG
36
0.272
SIDE CHAIN
19
A
ARG
7
0.297
SIDE CHAIN
19
A
ARG
16
0.316
SIDE CHAIN
19
A
ARG
22
0.275
SIDE CHAIN
19
A
ARG
30
0.308
SIDE CHAIN
19
A
ARG
36
0.318
SIDE CHAIN
20
A
ARG
7
0.317
SIDE CHAIN
20
A
ARG
16
0.261
SIDE CHAIN
20
A
ARG
22
0.271
SIDE CHAIN
20
A
ARG
30
0.317
SIDE CHAIN
20
A
ARG
36
0.279
SIDE CHAIN
1
A
LEU
3
66.82
-79.33
1
A
SER
4
63.75
-167.62
1
A
ILE
15
61.84
-93.56
2
A
CYS
5
73.07
-62.44
2
A
ILE
15
53.49
-126.75
3
A
ILE
15
51.05
-136.82
3
A
MET
21
63.18
77.04
4
A
PRO
2
-77.35
-167.42
4
A
ILE
15
51.37
-129.79
5
A
ILE
15
61.46
-94.03
5
A
MET
21
58.89
84.44
6
A
ILE
15
58.85
-93.51
6
A
MET
21
60.84
65.19
7
A
ILE
15
60.48
-92.98
8
A
SER
4
-91.40
43.54
8
A
CYS
5
-149.45
44.42
8
A
ILE
15
61.89
-92.90
8
A
MET
21
62.64
63.71
9
A
ILE
15
54.92
-116.78
10
A
ILE
15
54.84
-121.84
11
A
CYS
5
-97.40
40.18
11
A
ILE
15
61.49
-99.10
12
A
LEU
3
54.35
70.77
12
A
PRO
14
-80.32
31.20
12
A
ILE
15
-146.23
-153.95
12
A
ILE
24
-148.38
44.49
13
A
CYS
5
-104.75
45.60
13
A
ILE
15
61.29
-101.80
14
A
CYS
5
-97.43
49.18
14
A
ILE
15
61.42
-94.96
14
A
MET
21
61.85
65.70
15
A
PRO
14
-79.65
38.26
15
A
ILE
15
-157.31
-83.68
16
A
ILE
15
54.21
-119.22
17
A
ILE
15
63.02
-95.21
17
A
ILE
24
-145.33
42.16
18
A
LEU
3
70.69
132.61
18
A
ILE
15
59.68
-98.49
18
A
PRO
18
-78.53
-165.13
18
A
ILE
24
-142.03
49.29
19
A
SER
4
57.46
-171.03
19
A
ILE
15
56.88
-107.38
20
A
ARG
7
-69.45
89.81
20
A
ILE
15
53.75
-120.59
20
A
MET
21
61.68
86.19
SOLUTION STRUCTURE OF BOVINE NEUTROPHIL BETA-DEFENSIN 12: THE PEPTIDE FOLD OF THE BETA-DEFENSINS IS IDENTICAL TO THAT OF THE CLASSICAL DEFENSINS
1
Y
N
disulf
2.019
A
CYS
5
A
SG
CYS
5
1_555
A
CYS
34
A
SG
CYS
34
1_555
disulf
2.020
A
CYS
12
A
SG
CYS
12
1_555
A
CYS
27
A
SG
CYS
27
1_555
disulf
2.019
A
CYS
17
A
SG
CYS
17
1_555
A
CYS
35
A
SG
CYS
35
1_555
BETA-DEFENSIN 12
BETA-DEFENSIN 12
A
VAL
19
A
VAL
19
1
A
PRO
20
A
PRO
20
-0.16
A
VAL
19
A
VAL
19
2
A
PRO
20
A
PRO
20
-0.22
A
VAL
19
A
VAL
19
3
A
PRO
20
A
PRO
20
-0.30
A
VAL
19
A
VAL
19
4
A
PRO
20
A
PRO
20
-0.05
A
VAL
19
A
VAL
19
5
A
PRO
20
A
PRO
20
0.05
A
VAL
19
A
VAL
19
6
A
PRO
20
A
PRO
20
0.06
A
VAL
19
A
VAL
19
7
A
PRO
20
A
PRO
20
0.02
A
VAL
19
A
VAL
19
8
A
PRO
20
A
PRO
20
-0.42
A
VAL
19
A
VAL
19
9
A
PRO
20
A
PRO
20
-0.22
A
VAL
19
A
VAL
19
10
A
PRO
20
A
PRO
20
-0.31
A
VAL
19
A
VAL
19
11
A
PRO
20
A
PRO
20
0.14
A
VAL
19
A
VAL
19
12
A
PRO
20
A
PRO
20
-0.15
A
VAL
19
A
VAL
19
13
A
PRO
20
A
PRO
20
-0.05
A
VAL
19
A
VAL
19
14
A
PRO
20
A
PRO
20
0.10
A
VAL
19
A
VAL
19
15
A
PRO
20
A
PRO
20
0.04
A
VAL
19
A
VAL
19
16
A
PRO
20
A
PRO
20
-0.23
A
VAL
19
A
VAL
19
17
A
PRO
20
A
PRO
20
0.01
A
VAL
19
A
VAL
19
18
A
PRO
20
A
PRO
20
-1.20
A
VAL
19
A
VAL
19
19
A
PRO
20
A
PRO
20
0.08
A
VAL
19
A
VAL
19
20
A
PRO
20
A
PRO
20
-0.08
BD12_BOVIN
UNP
1
1
P46170
GPLSCGRNGGVCIPIRCPVPMRQIGTCFGRPVKCCRSW
2
38
1BNB
2
38
P46170
A
1
2
38
3
anti-parallel
anti-parallel
A
GLY
10
A
GLY
10
A
ILE
13
A
ILE
13
A
VAL
32
A
VAL
32
A
ARG
36
A
ARG
36
A
ARG
22
A
ARG
22
A
CYS
27
A
CYS
27
1
P 1