0.022857 0.000000 0.000000 0.000000 0.017513 0.000000 0.000000 0.000000 0.007785 0.00000 0.00000 0.00000 Lau, A.Y. Schaerer, O.D. Samson, L. Verdine, G.L. Ellenberger, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 43.750 57.100 128.450 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C5 H12 N O5 P 197.126 3-HYDROXY-PYRROLIDIN-2-YLMETHYL-MONOPHOSPHATE GROUP DNA linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N N Y 473 N C Y 474 N C Y 475 N C Y 476 N C Y 477 N C N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N N N 492 S C N 493 N C N 494 N O N 495 N C Y 496 N C Y 497 N C Y 498 N C Y 499 N C Y 500 N C Y 501 N C N 502 N O N 503 N O N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N N N 516 S C N 517 N C N 518 N O N 519 N C N 520 N C N 521 N C N 522 N O N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N O N 535 N P N 536 N O N 537 N O N 538 N O N 539 N C N 540 R C N 541 N N N 542 S C N 543 N O N 544 N C N 545 N C N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N sing Y 475 N doub N 476 N sing Y 477 N doub N 478 N sing Y 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing Y 494 N doub Y 495 N sing Y 496 N sing N 497 N sing Y 498 N doub N 499 N sing Y 500 N doub N 501 N sing Y 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N doub N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 95 249 258 10.1016/S0092-8674(00)81755-9 9790531 Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision. 1998 10.2210/pdb1bnk/pdb pdb_00001bnk 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 113 1 MIRRORS IMAGE PLATE 1998-03-15 MARRESEARCH NI FILTER MAD M x-ray 1 1.5418 1.0 1.0100 1.0 0.9787 1.0 0.9784 1.0 0.9500 1.0 X12C NSLS 1.5418, 1.0100, 0.9787, 0.9784, 0.9500 SYNCHROTRON NSLS BEAMLINE X12C 3832.501 DNA (5'-D(*GP*AP*CP*AP*TP*GP*YRRP*TP*TP*GP*CP*CP*T)-3') 1 syn polymer 3975.611 DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') 1 syn polymer 24051.623 PROTEIN (3-METHYLADENINE DNA GLYCOSYLASE) 3.2.2.21 1 man polymer 18.015 water 41 nat water AAG, ANPG, MPG E.C.3.2.2.21 no yes (DG)(DA)(DC)(DA)(DT)(DG)(YRR)(DT)(DT)(DG)(DC)(DC)(DT) GACATGNTTGCCT D polydeoxyribonucleotide no no (DG)(DG)(DC)(DA)(DA)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DA) GGCAATCATGTCA E polydeoxyribonucleotide no no KGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRHVRSQLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQD EAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQD KGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRHVRSQLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQD EAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample 9606 LIVER Homo sapiens CYTOPLASM AAG 511693 Escherichia coli BL21 BL21 PLASMID PLM1-AAG 1 2.49 56 DATA WERE COLLECTED USING THE OSCILLATION METHOD 7.5 pH 7.5 1.715 1 19 D 1 E 25 -0.512 D_DG1:DC25_E 1 -12.919 -0.702 0.245 -0.488 -4.617 1 20 D 2 E 24 5.545 D_DA2:DT24_E 2 -12.071 0.129 -0.163 0.053 -7.054 1 19 D 3 E 23 2.467 D_DC3:DG23_E 3 -5.656 0.395 -0.044 -0.256 1.311 1 20 D 4 E 22 -0.272 D_DA4:DT22_E 4 -12.088 0.152 0.128 -0.210 2.430 1 20 D 5 E 21 1.807 D_DT5:DA21_E 5 -3.037 0.207 0.329 -0.232 7.743 1 19 D 6 E 20 -3.252 D_DG6:DC20_E 6 9.092 -0.235 0.237 -0.248 -5.079 1 20 D 8 E 18 -3.490 D_DT8:DA18_E 7 -14.308 -0.095 -0.088 -0.051 -3.524 1 20 D 9 E 17 -0.957 D_DT9:DA17_E 8 -13.779 0.039 0.148 0.131 5.382 1 19 D 10 E 16 -1.495 D_DG10:DC16_E 9 0.841 0.349 0.045 -0.022 2.670 1 19 D 11 E 15 -4.081 D_DC11:DG15_E 10 -12.332 0.303 0.161 -0.442 -6.280 1 19 D 12 E 14 -3.586 D_DC12:DG14_E 11 -2.527 0.351 0.022 -0.569 3.511 41.539 D D 1 2 12.167 E E 25 24 3.495 8.572 -0.058 0.425 DD_DG1DA2:DT24DC25_EE 1 -0.211 0.299 40.683 -0.386 0.058 3.284 29.628 D D 2 3 4.920 E E 24 23 3.325 2.513 0.355 -0.378 DD_DA2DC3:DG23DT24_EE 2 0.181 -0.353 29.524 -1.277 -0.655 3.171 37.460 D D 3 4 11.234 E E 23 22 3.152 7.170 0.202 0.364 DD_DC3DA4:DT22DG23_EE 3 2.061 -3.229 36.736 -0.351 -0.051 3.116 28.812 D D 4 5 13.269 E E 22 21 3.297 6.544 0.201 -0.466 DD_DA4DT5:DA21DT22_EE 4 1.524 -3.091 28.033 -2.391 -0.065 2.985 43.609 D D 5 6 -10.160 E E 21 20 3.276 -7.512 0.156 1.523 DD_DT5DG6:DC20DA21_EE 5 1.814 -2.454 42.952 2.746 -0.042 3.209 32.085 D D 8 9 8.421 E E 18 17 3.255 4.629 0.029 0.080 DD_DT8DT9:DA17DA18_EE 6 -3.730 6.786 31.543 -0.685 -0.721 3.190 37.207 D D 9 10 -2.205 E E 17 16 3.192 -1.407 1.055 0.557 DD_DT9DG10:DC16DA17_EE 7 0.774 -1.214 37.174 1.056 -1.553 3.406 35.363 D D 10 11 3.010 E E 16 15 3.364 1.827 -0.970 -0.068 DD_DG10DC11:DG15DC16_EE 8 -2.036 3.356 35.260 -0.390 1.285 3.381 36.046 D D 11 12 8.747 E E 15 14 3.535 5.394 -0.021 -0.808 DD_DC11DC12:DG14DG15_EE 9 -0.055 0.088 35.654 -2.119 0.026 chem_comp_atom chem_comp_bond database_2 struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1998-10-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag RCSB Y RCSB 1998-07-29 REL HOH water HOH 6 4 HOH HOH 14 D HOH 15 4 HOH HOH 15 D HOH 19 4 HOH HOH 16 D HOH 29 4 HOH HOH 17 D HOH 23 4 HOH HOH 27 E HOH 25 4 HOH HOH 28 E HOH 31 4 HOH HOH 29 E HOH 32 4 HOH HOH 30 E HOH 36 4 HOH HOH 31 E HOH 1 4 HOH HOH 1 A HOH 2 4 HOH HOH 2 A HOH 3 4 HOH HOH 3 A HOH 4 4 HOH HOH 4 A HOH 5 4 HOH HOH 5 A HOH 7 4 HOH HOH 7 A HOH 8 4 HOH HOH 8 A HOH 9 4 HOH HOH 9 A HOH 10 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 22 4 HOH HOH 22 A HOH 24 4 HOH HOH 24 A HOH 26 4 HOH HOH 26 A HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 30 4 HOH HOH 30 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 35 4 HOH HOH 35 A HOH 37 4 HOH HOH 37 A HOH 38 4 HOH HOH 38 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A G 1 n 1 DG 1 D A 2 n 2 DA 2 D C 3 n 3 DC 3 D A 4 n 4 DA 4 D T 5 n 5 DT 5 D G 6 n 6 DG 6 D PYR 7 n 7 YRR 7 D T 8 n 8 DT 8 D T 9 n 9 DT 9 D G 10 n 10 DG 10 D C 11 n 11 DC 11 D C 12 n 12 DC 12 D T 13 n 13 DT 13 D G 14 n 1 DG 14 E G 15 n 2 DG 15 E C 16 n 3 DC 16 E A 17 n 4 DA 17 E A 18 n 5 DA 18 E T 19 n 6 DT 19 E C 20 n 7 DC 20 E A 21 n 8 DA 21 E T 22 n 9 DT 22 E G 23 n 10 DG 23 E T 24 n 11 DT 24 E C 25 n 12 DC 25 E A 26 n 13 DA 26 E LYS 80 n 1 LYS 80 A GLY 81 n 2 GLY 81 A HIS 82 n 3 HIS 82 A LEU 83 n 4 LEU 83 A THR 84 n 5 THR 84 A ARG 85 n 6 ARG 85 A LEU 86 n 7 LEU 86 A GLY 87 n 8 GLY 87 A LEU 88 n 9 LEU 88 A GLU 89 n 10 GLU 89 A PHE 90 n 11 PHE 90 A PHE 91 n 12 PHE 91 A ASP 92 n 13 ASP 92 A GLN 93 n 14 GLN 93 A PRO 94 n 15 PRO 94 A ALA 95 n 16 ALA 95 A VAL 96 n 17 VAL 96 A PRO 97 n 18 PRO 97 A LEU 98 n 19 LEU 98 A ALA 99 n 20 ALA 99 A ARG 100 n 21 ARG 100 A ALA 101 n 22 ALA 101 A PHE 102 n 23 PHE 102 A LEU 103 n 24 LEU 103 A GLY 104 n 25 GLY 104 A GLN 105 n 26 GLN 105 A VAL 106 n 27 VAL 106 A LEU 107 n 28 LEU 107 A VAL 108 n 29 VAL 108 A ARG 109 n 30 ARG 109 A ARG 110 n 31 ARG 110 A LEU 111 n 32 LEU 111 A PRO 112 n 33 PRO 112 A ASN 113 n 34 ASN 113 A GLY 114 n 35 GLY 114 A THR 115 n 36 THR 115 A GLU 116 n 37 GLU 116 A LEU 117 n 38 LEU 117 A ARG 118 n 39 ARG 118 A GLY 119 n 40 GLY 119 A ARG 120 n 41 ARG 120 A ILE 121 n 42 ILE 121 A VAL 122 n 43 VAL 122 A GLU 123 n 44 GLU 123 A THR 124 n 45 THR 124 A GLU 125 n 46 GLU 125 A ALA 126 n 47 ALA 126 A TYR 127 n 48 TYR 127 A LEU 128 n 49 LEU 128 A GLY 129 n 50 GLY 129 A PRO 130 n 51 PRO 130 A GLU 131 n 52 GLU 131 A ASP 132 n 53 ASP 132 A GLU 133 n 54 GLU 133 A ALA 134 n 55 ALA 134 A ALA 135 n 56 ALA 135 A HIS 136 n 57 HIS 136 A SER 137 n 58 SER 137 A ARG 138 n 59 ARG 138 A GLY 139 n 60 GLY 139 A GLY 140 n 61 GLY 140 A ARG 141 n 62 ARG 141 A ALA 142 n 63 GLN 142 A THR 143 n 64 THR 143 A PRO 144 n 65 PRO 144 A ARG 145 n 66 ARG 145 A ASN 146 n 67 ASN 146 A ALA 147 n 68 ARG 147 A GLY 148 n 69 GLY 148 A MET 149 n 70 MET 149 A PHE 150 n 71 PHE 150 A MET 151 n 72 MET 151 A LYS 152 n 73 LYS 152 A PRO 153 n 74 PRO 153 A GLY 154 n 75 GLY 154 A THR 155 n 76 THR 155 A LEU 156 n 77 LEU 156 A TYR 157 n 78 TYR 157 A VAL 158 n 79 VAL 158 A TYR 159 n 80 TYR 159 A ILE 160 n 81 ILE 160 A ILE 161 n 82 ILE 161 A TYR 162 n 83 TYR 162 A GLY 163 n 84 GLY 163 A MET 164 n 85 MET 164 A TYR 165 n 86 TYR 165 A PHE 166 n 87 PHE 166 A CYS 167 n 88 CYS 167 A MET 168 n 89 MET 168 A ASN 169 n 90 ASN 169 A ILE 170 n 91 ILE 170 A SER 171 n 92 SER 171 A SER 172 n 93 SER 172 A GLN 173 n 94 GLN 173 A GLY 174 n 95 GLY 174 A ASP 175 n 96 ASP 175 A GLY 176 n 97 GLY 176 A ALA 177 n 98 ALA 177 A CYS 178 n 99 CYS 178 A VAL 179 n 100 VAL 179 A LEU 180 n 101 LEU 180 A LEU 181 n 102 LEU 181 A ARG 182 n 103 ARG 182 A ALA 183 n 104 ALA 183 A LEU 184 n 105 LEU 184 A GLU 185 n 106 GLU 185 A PRO 186 n 107 PRO 186 A LEU 187 n 108 LEU 187 A GLU 188 n 109 GLU 188 A GLY 189 n 110 GLY 189 A LEU 190 n 111 LEU 190 A GLU 191 n 112 GLU 191 A THR 192 n 113 THR 192 A MET 193 n 114 MET 193 A ARG 194 n 115 ARG 194 A n 116 195 A n 117 196 A n 118 197 A n 119 198 A GLN 199 n 120 GLN 199 A LEU 200 n 121 LEU 200 A ARG 201 n 122 ARG 201 A n 123 202 A n 124 203 A n 125 204 A n 126 205 A SER 206 n 127 SER 206 A ALA 207 n 128 ARG 207 A VAL 208 n 129 VAL 208 A LEU 209 n 130 LEU 209 A ALA 210 n 131 LYS 210 A ASP 211 n 132 ASP 211 A ARG 212 n 133 ARG 212 A GLU 213 n 134 GLU 213 A LEU 214 n 135 LEU 214 A CYS 215 n 136 CYS 215 A SER 216 n 137 SER 216 A GLY 217 n 138 GLY 217 A PRO 218 n 139 PRO 218 A SER 219 n 140 SER 219 A LYS 220 n 141 LYS 220 A LEU 221 n 142 LEU 221 A CYS 222 n 143 CYS 222 A GLN 223 n 144 GLN 223 A ALA 224 n 145 ALA 224 A LEU 225 n 146 LEU 225 A ALA 226 n 147 ALA 226 A ILE 227 n 148 ILE 227 A ASN 228 n 149 ASN 228 A LYS 229 n 150 LYS 229 A SER 230 n 151 SER 230 A PHE 231 n 152 PHE 231 A ASP 232 n 153 ASP 232 A GLN 233 n 154 GLN 233 A ARG 234 n 155 ARG 234 A ASP 235 n 156 ASP 235 A LEU 236 n 157 LEU 236 A ALA 237 n 158 ALA 237 A GLN 238 n 159 GLN 238 A ASP 239 n 160 ASP 239 A GLU 240 n 161 GLU 240 A ALA 241 n 162 ALA 241 A VAL 242 n 163 VAL 242 A TRP 243 n 164 TRP 243 A LEU 244 n 165 LEU 244 A GLU 245 n 166 GLU 245 A ARG 246 n 167 ARG 246 A n 168 247 A n 169 248 A n 170 249 A n 171 250 A n 172 251 A n 173 252 A n 174 253 A n 175 254 A ALA 255 n 176 ALA 255 A VAL 256 n 177 VAL 256 A VAL 257 n 178 VAL 257 A ALA 258 n 179 ALA 258 A ALA 259 n 180 ALA 259 A ALA 260 n 181 ALA 260 A ARG 261 n 182 ARG 261 A VAL 262 n 183 VAL 262 A GLY 263 n 184 GLY 263 A VAL 264 n 185 VAL 264 A GLY 265 n 186 GLY 265 A HIS 266 n 187 HIS 266 A ALA 267 n 188 ALA 267 A GLY 268 n 189 GLY 268 A GLU 269 n 190 GLU 269 A TRP 270 n 191 TRP 270 A ALA 271 n 192 ALA 271 A ARG 272 n 193 ARG 272 A LYS 273 n 194 LYS 273 A PRO 274 n 195 PRO 274 A LEU 275 n 196 LEU 275 A ARG 276 n 197 ARG 276 A PHE 277 n 198 PHE 277 A TYR 278 n 199 TYR 278 A VAL 279 n 200 VAL 279 A ARG 280 n 201 ARG 280 A GLY 281 n 202 GLY 281 A SER 282 n 203 SER 282 A PRO 283 n 204 PRO 283 A TRP 284 n 205 TRP 284 A VAL 285 n 206 VAL 285 A SER 286 n 207 SER 286 A VAL 287 n 208 VAL 287 A VAL 288 n 209 VAL 288 A ASP 289 n 210 ASP 289 A ARG 290 n 211 ARG 290 A ALA 291 n 212 VAL 291 A ALA 292 n 213 ALA 292 A GLU 293 n 214 GLU 293 A ALA 294 n 215 GLN 294 A ASP 295 n 216 ASP 295 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TRP 243 C O TRP 164 A N VAL 108 C N VAL 29 A O LEU 107 C O LEU 28 A N GLY 119 C N GLY 40 A O ARG 118 C O ARG 39 A N GLU 188 C N GLU 109 A O TYR 157 C O TYR 78 A N ASN 169 C N ASN 90 A O ILE 170 C O ILE 91 A N VAL 179 C N VAL 100 A O CYS 178 C O CYS 99 A N TYR 127 C N TYR 48 A O THR 124 C O THR 45 A N PHE 277 C N PHE 198 A O LEU 275 C O LEU 196 A N ALA 259 C N ALA 180 1 A CG GLN 142 C CG GLN 63 1 Y 1 A CD GLN 142 C CD GLN 63 1 Y 1 A OE1 GLN 142 C OE1 GLN 63 1 Y 1 A NE2 GLN 142 C NE2 GLN 63 1 Y 1 A CG ARG 147 C CG ARG 68 1 Y 1 A CD ARG 147 C CD ARG 68 1 Y 1 A NE ARG 147 C NE ARG 68 1 Y 1 A CZ ARG 147 C CZ ARG 68 1 Y 1 A NH1 ARG 147 C NH1 ARG 68 1 Y 1 A NH2 ARG 147 C NH2 ARG 68 1 Y 1 A CG ARG 207 C CG ARG 128 1 Y 1 A CD ARG 207 C CD ARG 128 1 Y 1 A NE ARG 207 C NE ARG 128 1 Y 1 A CZ ARG 207 C CZ ARG 128 1 Y 1 A NH1 ARG 207 C NH1 ARG 128 1 Y 1 A NH2 ARG 207 C NH2 ARG 128 1 Y 1 A CG LYS 210 C CG LYS 131 1 Y 1 A CD LYS 210 C CD LYS 131 1 Y 1 A CE LYS 210 C CE LYS 131 1 Y 1 A NZ LYS 210 C NZ LYS 131 1 Y 1 A CG1 VAL 291 C CG1 VAL 212 1 Y 1 A CG2 VAL 291 C CG2 VAL 212 1 Y 1 A CG GLN 294 C CG GLN 215 1 Y 1 A CD GLN 294 C CD GLN 215 1 Y 1 A OE1 GLN 294 C OE1 GLN 215 1 Y 1 A NE2 GLN 294 C NE2 GLN 215 1 Y 1 A HIS 195 C HIS 116 1 Y 1 A VAL 196 C VAL 117 1 Y 1 A ARG 197 C ARG 118 1 Y 1 A SER 198 C SER 119 1 Y 1 A LYS 202 C LYS 123 1 Y 1 A GLY 203 C GLY 124 1 Y 1 A THR 204 C THR 125 1 Y 1 A ALA 205 C ALA 126 1 Y 1 A GLY 247 C GLY 168 1 Y 1 A PRO 248 C PRO 169 1 Y 1 A LEU 249 C LEU 170 1 Y 1 A GLU 250 C GLU 171 1 Y 1 A PRO 251 C PRO 172 1 Y 1 A SER 252 C SER 173 1 Y 1 A GLU 253 C GLU 174 1 Y 1 A PRO 254 C PRO 175 1 Y 1 A A C N ARG VAL 207 208 11.37 1 A MET 164 -160.30 -29.07 1 A LYS 229 -47.46 -19.03 1 A VAL 264 -140.33 30.29 1 A PRO 274 -69.89 78.18 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP 0.2600000 0.2160000 0.2160000 2.7 8.0 518 8482 10 51.7 RANDOM 10000.0 1 THROUGHOUT 3.0 MAD 2.7 8.0 41 2105 0 517 1547 0.007 1.36 0.3020000 0.2650000 2.79 54 642 10 2.7 30.0 1BNK 9321 0.0460000 1 15 9 100 2.7 2.82 10 0.1450000 9 100 phasing MLPHARE phasing SHARP refinement CNS 0.3C data reduction DENZO data scaling SCALEPACK HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A LEU 88 C LEU 9 HELX_P A PHE 91 C PHE 12 1 1 4 A ALA 95 C ALA 16 HELX_P A PHE 102 C PHE 23 1 2 8 A ARG 138 C ARG 59 HELX_P A GLY 140 C GLY 61 5 3 3 A ASN 146 C ASN 67 HELX_P A PHE 150 C PHE 71 5 4 5 A ASP 211 C ASP 132 HELX_P A GLU 213 C GLU 134 5 6 3 A PRO 218 C PRO 139 HELX_P A ALA 224 C ALA 145 1 7 7 A LYS 229 C LYS 150 HELX_P A PHE 231 C PHE 152 5 8 3 A GLY 265 C GLY 186 HELX_P A ALA 271 C ALA 192 5 9 7 A ARG 290 C ARG 211 HELX_P A GLU 293 C GLU 214 1 10 4 covale 1.608 both D DG 6 A O3' DG 6 1_555 D YRR 7 A P YRR 7 1_555 covale 1.605 both D YRR 7 A O3' YRR 7 1_555 D DT 8 A P DT 8 1_555 hydrog WATSON-CRICK D DG 1 A N1 DG 1 1_555 E DC 25 B N3 DC 12 1_555 hydrog WATSON-CRICK D DG 1 A N2 DG 1 1_555 E DC 25 B O2 DC 12 1_555 hydrog WATSON-CRICK D DG 1 A O6 DG 1 1_555 E DC 25 B N4 DC 12 1_555 hydrog WATSON-CRICK D DA 2 A N1 DA 2 1_555 E DT 24 B N3 DT 11 1_555 hydrog WATSON-CRICK D DA 2 A N6 DA 2 1_555 E DT 24 B O4 DT 11 1_555 hydrog WATSON-CRICK D DC 3 A N3 DC 3 1_555 E DG 23 B N1 DG 10 1_555 hydrog WATSON-CRICK D DC 3 A N4 DC 3 1_555 E DG 23 B O6 DG 10 1_555 hydrog WATSON-CRICK D DC 3 A O2 DC 3 1_555 E DG 23 B N2 DG 10 1_555 hydrog WATSON-CRICK D DA 4 A N1 DA 4 1_555 E DT 22 B N3 DT 9 1_555 hydrog WATSON-CRICK D DA 4 A N6 DA 4 1_555 E DT 22 B O4 DT 9 1_555 hydrog WATSON-CRICK D DT 5 A N3 DT 5 1_555 E DA 21 B N1 DA 8 1_555 hydrog WATSON-CRICK D DT 5 A O4 DT 5 1_555 E DA 21 B N6 DA 8 1_555 hydrog WATSON-CRICK D DG 6 A N1 DG 6 1_555 E DC 20 B N3 DC 7 1_555 hydrog WATSON-CRICK D DG 6 A N2 DG 6 1_555 E DC 20 B O2 DC 7 1_555 hydrog WATSON-CRICK D DG 6 A O6 DG 6 1_555 E DC 20 B N4 DC 7 1_555 hydrog WATSON-CRICK D DT 8 A N3 DT 8 1_555 E DA 18 B N1 DA 5 1_555 hydrog WATSON-CRICK D DT 8 A O4 DT 8 1_555 E DA 18 B N6 DA 5 1_555 hydrog WATSON-CRICK D DT 9 A N3 DT 9 1_555 E DA 17 B N1 DA 4 1_555 hydrog WATSON-CRICK D DT 9 A O4 DT 9 1_555 E DA 17 B N6 DA 4 1_555 hydrog WATSON-CRICK D DG 10 A N1 DG 10 1_555 E DC 16 B N3 DC 3 1_555 hydrog WATSON-CRICK D DG 10 A N2 DG 10 1_555 E DC 16 B O2 DC 3 1_555 hydrog WATSON-CRICK D DG 10 A O6 DG 10 1_555 E DC 16 B N4 DC 3 1_555 hydrog WATSON-CRICK D DC 11 A N3 DC 11 1_555 E DG 15 B N1 DG 2 1_555 hydrog WATSON-CRICK D DC 11 A N4 DC 11 1_555 E DG 15 B O6 DG 2 1_555 hydrog WATSON-CRICK D DC 11 A O2 DC 11 1_555 E DG 15 B N2 DG 2 1_555 hydrog WATSON-CRICK D DC 12 A N3 DC 12 1_555 E DG 14 B N1 DG 1 1_555 hydrog WATSON-CRICK D DC 12 A N4 DC 12 1_555 E DG 14 B O6 DG 1 1_555 hydrog WATSON-CRICK D DC 12 A O2 DC 12 1_555 E DG 14 B N2 DG 1 1_555 HYDROLASE/DNA DNA REPAIR, DNA GLYCOSYLASE, HYDROLASE-DNA COMPLEX 3MG_HUMAN UNP 3 P29372 1BNK PDB 1 1BNK 1BNK PDB 2 1BNK 80 295 1BNK 80 295 P29372 A 1 1 216 1 13 1BNK 1 13 1BNK D 2 1 13 14 26 1BNK 14 26 1BNK E 3 1 13 4 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 242 C VAL 163 A GLU 245 C GLU 166 A VAL 106 C VAL 27 A ARG 110 C ARG 31 A GLU 116 C GLU 37 A ILE 121 C ILE 42 A LEU 184 C LEU 105 A GLU 188 C GLU 109 A LEU 156 C LEU 77 A ILE 161 C ILE 82 A TYR 165 C TYR 86 A SER 171 C SER 92 A CYS 178 C CYS 99 A ALA 183 C ALA 104 A GLU 123 C GLU 44 A TYR 127 C TYR 48 A PRO 274 C PRO 195 A VAL 279 C VAL 200 A VAL 256 C VAL 177 A ALA 260 C ALA 181 19 P 21 21 21