1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Liu, D.-J.
Prasad, R.
Wilson, S.H.
Derose, E.F.
Mullen, G.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
35
6188
6200
10.1021/bi952656o
8639559
Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface.
1996
US
Biochemistry
BICHAW
0033
0006-2960
33
9537
Assignments of 1H, 15N, and 13C Resonances for the Backbone and Side Chains of the N-Terminal Domain of DNA Polymerase Beta. Determination of the Secondary Structure and Tertiary Contacts
1994
10.2210/pdb1bnp/pdb
pdb_00001bnp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9632.298
DNA POLYMERASE BETA
2.7.7.7
N-TERMINAL DOMAIN, RESIDUES 1 - 87
1
man
polymer
no
no
MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEK
MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
Escherichia coli
sample
10116
Rattus norvegicus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
BACTERIAL
PRSET-8K
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1996-12-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1996-04-25
REL
55
55
6.7
300
K
BRUNGER
refinement
X-PLOR
3.1
structure solution
X-PLOR
3.1
500
MET
1
n
1
MET
1
A
SER
2
n
2
SER
2
A
LYS
3
n
3
LYS
3
A
ARG
4
n
4
ARG
4
A
LYS
5
n
5
LYS
5
A
ALA
6
n
6
ALA
6
A
PRO
7
n
7
PRO
7
A
GLN
8
n
8
GLN
8
A
GLU
9
n
9
GLU
9
A
THR
10
n
10
THR
10
A
LEU
11
n
11
LEU
11
A
ASN
12
n
12
ASN
12
A
GLY
13
n
13
GLY
13
A
GLY
14
n
14
GLY
14
A
ILE
15
n
15
ILE
15
A
THR
16
n
16
THR
16
A
ASP
17
n
17
ASP
17
A
MET
18
n
18
MET
18
A
LEU
19
n
19
LEU
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
ALA
23
n
23
ALA
23
A
ASN
24
n
24
ASN
24
A
PHE
25
n
25
PHE
25
A
GLU
26
n
26
GLU
26
A
LYS
27
n
27
LYS
27
A
ASN
28
n
28
ASN
28
A
VAL
29
n
29
VAL
29
A
SER
30
n
30
SER
30
A
GLN
31
n
31
GLN
31
A
ALA
32
n
32
ALA
32
A
ILE
33
n
33
ILE
33
A
HIS
34
n
34
HIS
34
A
LYS
35
n
35
LYS
35
A
TYR
36
n
36
TYR
36
A
ASN
37
n
37
ASN
37
A
ALA
38
n
38
ALA
38
A
TYR
39
n
39
TYR
39
A
ARG
40
n
40
ARG
40
A
LYS
41
n
41
LYS
41
A
ALA
42
n
42
ALA
42
A
ALA
43
n
43
ALA
43
A
SER
44
n
44
SER
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
PRO
50
n
50
PRO
50
A
HIS
51
n
51
HIS
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
GLY
56
n
56
GLY
56
A
ALA
57
n
57
ALA
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
LYS
61
n
61
LYS
61
A
LEU
62
n
62
LEU
62
A
PRO
63
n
63
PRO
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
GLY
66
n
66
GLY
66
A
THR
67
n
67
THR
67
A
LYS
68
n
68
LYS
68
A
ILE
69
n
69
ILE
69
A
ALA
70
n
70
ALA
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
GLU
75
n
75
GLU
75
A
PHE
76
n
76
PHE
76
A
LEU
77
n
77
LEU
77
A
ALA
78
n
78
ALA
78
A
THR
79
n
79
THR
79
A
GLY
80
n
80
GLY
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
SER
2
60.03
87.00
1
A
ARG
4
-138.05
-61.86
1
A
LYS
5
-172.06
94.95
1
A
THR
10
52.83
-179.80
1
A
LEU
11
-90.28
-83.14
1
A
ASN
12
-150.70
-59.56
1
A
GLU
26
46.28
27.21
1
A
LYS
27
-153.11
-69.84
1
A
SER
30
-59.99
-160.23
1
A
ALA
32
-172.33
31.72
1
A
LYS
52
-177.20
106.57
1
A
SER
55
-124.00
-164.21
1
A
LYS
68
76.84
-8.64
1
A
LEU
85
59.64
103.39
2
A
LYS
5
60.07
-177.23
2
A
PRO
7
-60.97
90.46
2
A
ASN
12
-100.18
-74.39
2
A
ILE
15
-65.10
-74.89
2
A
LYS
27
-161.93
-66.28
2
A
ALA
32
78.83
57.38
2
A
HIS
34
-168.09
-44.00
2
A
HIS
51
78.13
151.93
2
A
LYS
52
63.12
117.08
2
A
THR
67
-158.72
73.10
2
A
LYS
68
77.60
-6.47
2
A
ALA
78
-90.01
-60.20
2
A
THR
79
-149.72
-50.78
2
A
LYS
81
-97.86
-65.33
2
A
LEU
82
-119.41
55.30
2
A
LEU
85
-155.65
41.53
3
A
LYS
5
61.45
-89.71
3
A
THR
10
-164.26
115.56
3
A
GLU
26
47.65
26.84
3
A
LYS
27
-149.23
-70.12
3
A
VAL
29
-131.22
-44.67
3
A
SER
30
-66.58
90.75
3
A
GLN
31
-163.85
27.00
3
A
HIS
51
73.75
-171.78
3
A
LYS
52
52.36
77.22
3
A
LYS
68
59.56
-89.16
3
A
ARG
83
60.93
-89.81
3
A
GLU
86
-167.61
-54.37
4
A
LYS
3
59.52
178.58
4
A
ARG
4
-99.06
34.26
4
A
PRO
7
-61.01
-164.90
4
A
ILE
15
-90.74
-66.35
4
A
LYS
27
-159.06
-66.73
4
A
VAL
29
-151.42
-67.08
4
A
SER
30
-54.28
102.31
4
A
GLN
31
-179.15
-71.52
4
A
ALA
32
176.69
41.29
4
A
HIS
51
46.11
81.80
4
A
LYS
52
-179.04
41.93
4
A
SER
55
-71.79
-78.25
4
A
THR
67
-177.10
-41.90
4
A
LYS
68
-133.20
-45.63
4
A
THR
79
-159.74
-51.03
4
A
LEU
82
-64.00
-179.19
5
A
ILE
15
-90.78
-67.69
5
A
GLU
26
48.36
26.17
5
A
LYS
27
-150.33
-79.95
5
A
SER
30
-62.05
-159.63
5
A
ALA
32
-176.43
40.88
5
A
HIS
51
71.49
164.65
5
A
LYS
52
40.44
78.45
5
A
SER
55
-127.42
-66.55
5
A
LYS
68
-176.71
-38.91
5
A
THR
79
-139.43
-72.80
5
A
ARG
83
-132.81
-54.33
6
A
ARG
4
-168.24
33.43
6
A
PRO
7
-62.95
98.38
6
A
GLU
9
-178.24
85.09
6
A
THR
10
-178.22
-46.27
6
A
LYS
27
-155.15
-78.77
6
A
GLN
31
61.90
107.81
6
A
ALA
32
73.95
43.08
6
A
HIS
34
-157.51
-46.29
6
A
HIS
51
45.78
-167.69
6
A
LYS
52
56.57
89.70
6
A
LYS
54
-90.44
53.39
6
A
SER
55
-156.66
-80.32
6
A
THR
67
60.58
165.59
6
A
LYS
68
59.27
-89.78
6
A
THR
79
-156.68
-66.33
7
A
LYS
3
60.56
171.86
7
A
PRO
7
-60.92
92.27
7
A
PHE
25
-35.34
-34.35
7
A
LYS
27
-154.09
-78.36
7
A
VAL
29
-142.21
48.43
7
A
SER
30
-58.20
-102.15
7
A
GLN
31
-139.14
-38.45
7
A
ALA
32
-99.86
42.69
7
A
ILE
53
56.60
133.35
7
A
THR
67
59.58
178.54
7
A
LYS
68
59.83
-88.28
7
A
ALA
78
-90.15
-72.42
7
A
LYS
84
-110.97
77.92
7
A
LEU
85
-59.02
176.84
7
A
GLU
86
-176.97
113.17
8
A
ARG
4
-131.00
-46.75
8
A
LYS
5
58.16
-175.08
8
A
THR
10
-170.17
-41.83
8
A
ASN
12
-137.71
-76.60
8
A
ILE
15
-90.63
-61.94
8
A
LYS
27
-153.71
-78.66
8
A
SER
30
-76.06
-145.77
8
A
ALA
32
74.66
41.31
8
A
HIS
34
86.78
-54.24
8
A
HIS
51
80.41
-172.08
8
A
LYS
52
39.34
55.19
8
A
ILE
53
-59.87
177.39
8
A
SER
55
-167.42
-41.49
8
A
THR
67
-153.00
-76.33
8
A
ARG
83
-63.00
91.90
8
A
GLU
86
59.86
96.72
9
A
SER
2
60.31
-174.67
9
A
THR
10
51.01
97.24
9
A
ASN
12
-89.94
-82.10
9
A
LYS
27
-150.00
-77.42
9
A
GLN
31
61.35
-155.81
9
A
ALA
32
-116.75
66.02
9
A
LYS
52
179.00
120.38
9
A
SER
55
-67.24
-75.35
9
A
PRO
63
-62.63
91.84
9
A
LYS
68
59.82
-89.03
10
A
SER
2
60.30
89.79
10
A
ARG
4
60.69
162.17
10
A
PRO
7
-61.93
-159.06
10
A
THR
10
-162.02
31.15
10
A
GLU
26
48.44
26.45
10
A
LYS
27
-159.71
-70.38
10
A
ALA
32
-177.66
80.69
10
A
PRO
50
-47.01
-7.49
10
A
HIS
51
46.42
-158.74
10
A
LYS
52
57.09
-92.55
10
A
ILE
53
61.95
117.34
10
A
LYS
68
65.86
-86.39
10
A
THR
79
-155.17
63.79
10
A
LEU
82
59.31
83.74
11
A
LYS
3
-121.64
-63.80
11
A
GLU
9
-90.22
58.53
11
A
THR
10
-177.47
78.51
11
A
ASP
17
-86.06
-73.97
11
A
PHE
25
-29.50
-45.19
11
A
GLU
26
48.87
26.19
11
A
LYS
27
-155.86
-81.08
11
A
GLN
31
85.31
-48.52
11
A
HIS
34
-130.55
-45.96
11
A
HIS
51
70.77
-171.86
11
A
LYS
52
49.90
105.97
11
A
LYS
54
-77.08
-70.96
11
A
THR
67
56.78
170.67
11
A
LYS
68
60.73
-88.58
11
A
THR
79
-96.74
41.90
12
A
LYS
3
60.24
178.42
12
A
LYS
5
-94.45
-72.12
12
A
PRO
7
-60.72
-175.76
12
A
GLN
8
-90.14
51.53
12
A
ILE
15
-90.26
-61.80
12
A
PHE
25
-29.31
-46.58
12
A
GLU
26
47.52
27.30
12
A
LYS
27
-150.81
-70.86
12
A
ALA
32
169.83
57.13
12
A
HIS
34
-173.32
-42.78
12
A
HIS
51
77.01
-164.05
12
A
LYS
52
40.85
84.34
12
A
ALA
78
-91.24
-79.46
12
A
THR
79
-160.57
29.71
12
A
LYS
81
-133.40
-48.00
12
A
ARG
83
59.46
169.21
12
A
LEU
85
59.26
171.25
12
A
GLU
86
-171.13
128.41
13
A
SER
2
-73.35
-70.74
13
A
LYS
3
60.80
109.76
13
A
ARG
4
62.52
157.23
13
A
PHE
25
-36.18
-35.86
13
A
LYS
27
-151.39
-69.46
13
A
VAL
29
-152.52
44.43
13
A
SER
30
-56.70
-87.65
13
A
GLN
31
-144.96
-56.50
13
A
ALA
32
-95.65
47.90
13
A
HIS
51
75.15
174.73
13
A
LYS
54
-90.79
46.73
13
A
SER
55
-179.57
145.35
13
A
THR
67
-162.43
-69.15
13
A
THR
79
-160.22
42.15
13
A
ARG
83
-101.08
76.34
14
A
ASN
12
-136.10
-61.27
14
A
GLU
26
47.39
28.02
14
A
LYS
27
-151.38
-68.14
14
A
GLN
31
61.62
107.34
14
A
ALA
32
73.55
43.21
14
A
HIS
34
-148.65
-48.35
14
A
HIS
51
48.36
-161.41
14
A
LYS
52
54.74
98.57
14
A
SER
55
-76.55
-76.50
14
A
THR
67
-178.08
-42.87
14
A
LYS
68
-153.40
-48.66
14
A
LYS
81
-123.19
-65.26
14
A
ARG
83
-169.70
-68.88
14
A
LEU
85
59.90
97.20
15
A
LYS
3
-141.04
-57.82
15
A
PRO
7
-59.81
-72.02
15
A
GLU
9
-130.38
-56.67
15
A
THR
10
-136.24
-63.29
15
A
ASN
12
-89.98
-81.59
15
A
LYS
27
-163.23
-79.11
15
A
GLN
31
84.35
-43.25
15
A
HIS
34
-169.15
-43.37
15
A
HIS
51
47.11
-166.07
15
A
LYS
52
48.15
85.51
15
A
THR
79
-158.03
57.70
15
A
LEU
82
59.34
-179.56
15
A
ARG
83
-161.86
81.73
15
A
LYS
84
-140.17
43.67
15
A
GLU
86
-162.23
-43.28
16
A
LYS
5
59.65
166.39
16
A
ASN
12
-119.67
-80.68
16
A
LYS
27
-163.86
-73.50
16
A
SER
30
-63.52
-179.70
16
A
ALA
32
-178.29
78.06
16
A
PRO
50
-38.18
-21.29
16
A
HIS
51
46.03
-158.96
16
A
LYS
52
52.86
74.39
16
A
SER
55
-79.24
-80.02
16
A
THR
67
-156.10
-55.62
16
A
LYS
68
-134.13
-44.96
16
A
ALA
78
-91.96
47.03
16
A
LYS
81
-160.28
54.30
16
A
ARG
83
58.64
-174.49
17
A
LYS
5
61.09
161.49
17
A
GLN
8
-65.73
98.59
17
A
ILE
15
-93.03
-63.42
17
A
PHE
25
-29.36
-52.45
17
A
LYS
27
-157.55
-66.22
17
A
ALA
32
-161.43
65.93
17
A
HIS
51
44.21
161.58
17
A
LYS
52
84.28
-62.94
17
A
ILE
53
46.62
-158.49
17
A
LYS
54
-90.27
-66.71
17
A
SER
55
-96.60
-94.57
17
A
LYS
68
83.04
-64.50
18
A
THR
10
-136.70
-73.36
18
A
LEU
11
-90.04
-60.85
18
A
LYS
27
-150.20
-67.62
18
A
GLN
31
-52.84
94.52
18
A
ALA
32
169.88
-28.31
18
A
HIS
51
74.50
164.74
18
A
PRO
63
-64.84
91.43
18
A
THR
67
60.98
-90.15
18
A
GLU
86
59.73
98.67
19
A
SER
2
60.06
84.01
19
A
LYS
5
-93.24
-62.31
19
A
GLN
8
-90.18
51.68
19
A
GLU
9
-172.79
-44.59
19
A
THR
10
-175.13
147.34
19
A
ILE
15
-91.00
-61.52
19
A
LYS
27
170.23
-36.51
19
A
ALA
32
70.84
72.97
19
A
HIS
34
-178.10
-40.81
19
A
HIS
51
44.93
71.61
19
A
LYS
52
-178.87
114.70
19
A
LYS
68
76.87
-7.02
19
A
ALA
78
-92.42
38.26
19
A
ARG
83
-174.60
116.61
19
A
LYS
84
59.99
103.30
19
A
GLU
86
59.55
98.23
20
A
LYS
3
-163.86
51.11
20
A
THR
10
-160.82
65.67
20
A
PHE
25
-39.99
-33.51
20
A
LYS
27
-155.76
-79.23
20
A
VAL
29
-149.32
43.68
20
A
SER
30
-64.61
-150.64
20
A
ALA
32
78.07
41.53
20
A
HIS
51
45.58
-167.91
20
A
LYS
52
49.56
91.31
20
A
LYS
54
-90.72
-62.29
20
A
LYS
81
-140.37
-73.41
20
A
LYS
84
58.36
99.49
20
A
LEU
85
-94.37
-75.02
20
A
GLU
86
-165.88
-65.63
21
A
GLU
9
-89.11
-70.13
21
A
GLU
26
47.22
26.72
21
A
LYS
27
-150.89
-76.45
21
A
GLN
31
61.02
102.62
21
A
ALA
32
62.66
71.76
21
A
HIS
34
-128.35
-67.94
21
A
HIS
51
75.70
172.73
21
A
LYS
52
57.41
79.99
21
A
LYS
54
-82.04
-78.21
21
A
LEU
62
-53.27
108.90
21
A
THR
79
-143.42
35.41
21
A
ARG
83
-125.88
-66.96
21
A
LYS
84
-168.65
35.51
21
A
GLU
86
59.98
82.78
22
A
SER
2
-161.34
-51.32
22
A
LYS
3
60.22
-174.06
22
A
THR
10
52.32
99.17
22
A
LEU
11
-58.13
92.42
22
A
ILE
15
-90.66
-67.64
22
A
GLU
26
80.30
-61.78
22
A
LYS
27
-66.09
-80.68
22
A
SER
30
-62.35
-158.82
22
A
ALA
32
-177.70
44.71
22
A
HIS
51
70.93
158.37
22
A
LYS
52
64.75
122.14
22
A
LEU
62
-53.00
108.52
22
A
GLU
86
-166.38
93.20
23
A
LYS
3
-120.13
-169.71
23
A
ARG
4
-100.11
48.24
23
A
GLU
9
-178.08
-65.45
23
A
GLU
26
45.39
27.78
23
A
LYS
27
-149.39
-69.19
23
A
GLN
31
61.74
-155.69
23
A
ALA
32
-117.08
63.41
23
A
HIS
51
78.25
-174.70
23
A
LYS
52
40.99
85.96
23
A
PRO
63
-62.16
90.64
23
A
THR
67
-68.19
-169.88
23
A
LYS
68
67.32
-85.86
23
A
GLU
86
59.87
166.74
24
A
SER
2
60.13
83.95
24
A
LYS
3
-145.74
-56.41
24
A
GLU
9
60.92
-165.52
24
A
ILE
15
-69.93
-75.93
24
A
LYS
27
-151.36
-66.82
24
A
SER
30
-75.23
-167.95
24
A
GLN
31
59.22
-150.79
24
A
PRO
50
-36.79
-26.12
24
A
HIS
51
48.53
-161.69
24
A
LYS
52
50.63
93.60
24
A
SER
55
-122.40
-74.72
24
A
VAL
65
-152.02
68.73
24
A
LYS
68
178.51
-67.84
24
A
THR
79
-97.53
33.64
24
A
LEU
82
59.68
170.25
24
A
LEU
85
-148.21
-52.77
24
A
GLU
86
-69.02
-174.54
25
A
SER
2
-146.78
-68.30
25
A
ARG
4
-157.29
-67.07
25
A
LYS
5
59.42
84.14
25
A
GLU
9
-148.71
-58.43
25
A
THR
10
47.83
27.85
25
A
ASN
12
-147.18
-68.05
25
A
ILE
15
-90.14
-62.39
25
A
LYS
27
-164.80
-66.57
25
A
VAL
29
-151.03
-41.65
25
A
SER
30
-54.69
99.37
25
A
GLN
31
175.76
-75.63
25
A
ALA
32
176.03
59.14
25
A
HIS
51
77.23
52.40
25
A
LYS
52
174.00
119.07
25
A
PRO
63
-63.41
-78.65
25
A
THR
67
63.86
147.50
25
A
LYS
68
77.68
-75.15
25
A
THR
79
-156.87
39.80
25
A
LYS
81
-155.31
85.52
25
A
LEU
85
-142.06
30.52
26
A
SER
2
-143.02
59.93
26
A
LYS
3
59.98
171.62
26
A
PRO
7
-60.64
-179.66
26
A
GLU
9
-165.87
102.96
26
A
THR
10
-148.60
-73.41
26
A
ILE
15
-91.71
-64.71
26
A
PHE
25
-73.99
31.54
26
A
ASN
28
-92.13
-70.10
26
A
GLN
31
59.53
101.48
26
A
ALA
32
73.86
45.83
26
A
HIS
34
-155.29
-47.09
26
A
PRO
50
-65.22
81.86
26
A
HIS
51
-50.06
-107.12
26
A
LYS
52
40.36
81.70
26
A
SER
55
-103.92
-167.14
26
A
PRO
63
-61.26
94.35
26
A
THR
67
60.99
-90.61
26
A
ALA
78
-90.65
-67.37
26
A
THR
79
-160.09
-43.55
26
A
LEU
82
59.64
-89.87
26
A
ARG
83
60.04
75.96
26
A
LYS
84
-177.73
124.18
26
A
LEU
85
-176.52
134.70
27
A
LYS
27
-161.32
-65.52
27
A
VAL
29
-150.47
36.21
27
A
SER
30
-54.58
-87.87
27
A
ALA
32
71.66
32.00
27
A
PRO
50
-42.40
-17.78
27
A
HIS
51
47.45
-161.57
27
A
PRO
63
-61.35
90.48
27
A
THR
67
-179.96
-38.46
27
A
LYS
68
-161.98
-43.73
27
A
THR
79
-127.24
-66.48
27
A
ARG
83
-174.70
37.30
27
A
LYS
84
-95.27
-67.77
27
A
LEU
85
-64.35
-74.54
27
A
GLU
86
60.00
92.30
28
A
LYS
3
-135.08
-67.43
28
A
PRO
7
-63.15
-162.36
28
A
ASN
12
-117.31
-76.88
28
A
GLU
26
43.54
27.73
28
A
LYS
27
-145.31
-59.02
28
A
SER
30
-91.28
-79.57
28
A
HIS
34
-138.44
-44.41
28
A
HIS
51
44.57
-162.41
28
A
LYS
52
47.71
79.50
28
A
LYS
54
-90.36
-69.58
28
A
SER
55
-79.12
-164.58
28
A
LYS
68
77.14
-76.70
28
A
THR
79
-136.25
-62.36
28
A
ARG
83
-159.62
35.96
29
A
SER
2
62.03
-89.58
29
A
LYS
3
-175.19
81.60
29
A
LYS
5
-154.40
28.09
29
A
THR
10
-63.71
-174.04
29
A
GLU
26
49.30
25.57
29
A
LYS
27
-148.19
-69.50
29
A
SER
30
-76.81
-85.92
29
A
GLN
31
-150.96
-56.31
29
A
ALA
32
-95.56
46.03
29
A
HIS
51
86.43
-125.14
29
A
LYS
52
-34.55
-36.18
29
A
ILE
53
40.65
-162.04
29
A
SER
55
74.95
117.81
29
A
ALA
78
-90.72
-61.95
29
A
THR
79
-146.28
-146.41
29
A
LEU
82
60.06
162.74
29
A
GLU
86
-146.27
-63.00
30
A
LYS
3
-160.40
-68.57
30
A
THR
10
-134.21
-70.71
30
A
ASN
12
-150.08
-53.13
30
A
PHE
25
-37.68
-37.36
30
A
LYS
27
-151.64
-67.75
30
A
SER
30
-90.30
-79.29
30
A
ALA
32
71.72
35.83
30
A
HIS
51
74.96
-175.06
30
A
LYS
52
56.14
75.15
30
A
PRO
63
-63.57
92.75
30
A
LEU
82
59.78
100.38
30
A
LEU
85
62.93
152.27
30
A
GLU
86
59.27
-89.86
31
A
SER
2
59.89
92.84
31
A
LYS
5
-69.56
-172.68
31
A
PRO
7
-61.06
-164.58
31
A
THR
10
62.34
88.44
31
A
ASN
12
-108.45
-62.96
31
A
PHE
25
-28.62
-41.82
31
A
LYS
27
-152.49
-62.74
31
A
SER
30
-91.04
-81.51
31
A
ALA
32
70.99
35.77
31
A
HIS
51
76.55
165.35
31
A
LYS
52
58.94
108.48
31
A
LYS
54
-87.40
-73.48
31
A
PRO
63
-62.44
92.85
31
A
THR
67
61.02
86.17
31
A
LYS
68
82.63
-62.53
31
A
LEU
82
-148.27
41.42
31
A
ARG
83
60.12
164.96
32
A
LYS
3
-133.39
-69.03
32
A
ARG
4
60.46
-89.39
32
A
GLU
9
59.44
-89.52
32
A
THR
10
49.88
-174.56
32
A
LEU
11
-60.69
-172.09
32
A
LYS
27
-172.82
-69.16
32
A
ALA
32
177.08
86.96
32
A
HIS
34
-171.05
-43.03
32
A
HIS
51
88.71
-107.85
32
A
ILE
53
59.28
163.91
32
A
LYS
68
84.24
-47.07
32
A
THR
79
-130.05
-51.49
33
A
ARG
4
64.72
128.15
33
A
THR
10
-134.23
-56.50
33
A
LYS
27
-158.19
-66.33
33
A
VAL
29
-152.28
-40.23
33
A
GLN
31
-165.33
26.54
33
A
ALA
32
74.12
44.20
33
A
HIS
51
77.25
166.37
33
A
LYS
52
63.86
144.75
33
A
LYS
54
-91.48
37.35
33
A
SER
55
-173.47
-68.92
33
A
PRO
63
-63.97
90.33
33
A
THR
79
-133.39
-155.79
33
A
LYS
81
-85.12
-81.50
33
A
LEU
82
-155.76
30.88
33
A
ARG
83
-165.17
107.56
34
A
LYS
3
-152.43
84.00
34
A
LYS
5
60.38
-89.69
34
A
ILE
15
-90.90
-61.70
34
A
GLU
26
79.01
-71.34
34
A
LYS
27
-64.63
-79.49
34
A
SER
30
-54.75
-88.22
34
A
ALA
32
71.15
38.20
34
A
HIS
51
81.22
173.72
34
A
LYS
52
63.48
148.69
34
A
LEU
62
-54.89
109.05
34
A
PRO
63
-65.75
89.33
34
A
LEU
85
-153.28
73.51
35
A
SER
2
60.20
99.11
35
A
THR
10
-119.05
-163.33
35
A
LYS
27
-149.59
-60.67
35
A
SER
30
-90.44
-82.06
35
A
ALA
32
72.65
35.53
35
A
HIS
51
67.95
127.30
35
A
LYS
52
83.20
-45.09
35
A
ILE
53
44.92
-171.39
35
A
LYS
54
-90.93
-81.21
35
A
SER
55
-68.16
-79.49
35
A
THR
67
-138.74
-45.15
35
A
LYS
68
-154.42
-43.69
35
A
THR
79
-143.45
-71.55
35
A
LYS
84
62.35
156.60
35
A
LEU
85
59.52
-174.11
36
A
LYS
3
-108.93
54.81
36
A
ARG
4
62.62
155.86
36
A
PRO
7
-60.77
-159.74
36
A
GLN
8
-70.28
-165.82
36
A
LEU
11
-61.99
-74.23
36
A
ASN
12
-148.20
-90.73
36
A
ILE
15
-90.25
-62.82
36
A
PHE
25
-33.36
-38.26
36
A
LYS
27
-152.28
-72.58
36
A
VAL
29
-104.62
42.54
36
A
SER
30
-90.25
-80.88
36
A
HIS
51
73.16
176.61
36
A
LYS
52
74.67
-78.79
36
A
ILE
53
59.80
100.78
36
A
SER
55
-69.59
-76.48
36
A
LYS
68
75.78
-3.54
36
A
LEU
77
-91.25
-67.24
36
A
LYS
84
64.68
124.53
36
A
LEU
85
-147.08
39.74
37
A
SER
2
-176.55
-42.88
37
A
LYS
3
60.42
172.19
37
A
ARG
4
60.19
96.03
37
A
LYS
5
64.10
120.10
37
A
ASN
12
-117.63
-73.58
37
A
GLU
26
80.30
-62.79
37
A
VAL
29
-153.58
36.08
37
A
SER
30
-51.92
-86.10
37
A
GLN
31
-155.96
-42.81
37
A
ALA
32
-97.27
39.29
37
A
HIS
51
77.03
163.11
37
A
LYS
52
63.83
145.60
37
A
THR
67
60.53
-157.93
37
A
ALA
78
-90.36
-68.19
38
A
SER
2
-146.92
-73.93
38
A
LYS
3
59.51
171.80
38
A
ARG
4
-83.50
-70.39
38
A
GLU
9
-175.80
141.05
38
A
ASN
12
-137.41
-80.91
38
A
LYS
27
175.33
-48.20
38
A
GLN
31
-59.73
92.83
38
A
ALA
32
171.55
86.64
38
A
HIS
51
46.29
-161.48
38
A
LYS
52
51.40
72.73
38
A
LYS
54
-90.38
-65.97
38
A
SER
55
-98.62
-81.77
38
A
VAL
65
-153.21
41.28
38
A
LYS
68
69.45
-84.21
38
A
THR
79
-144.54
-49.97
38
A
GLU
86
-168.24
91.00
39
A
LYS
3
-159.52
85.07
39
A
ARG
4
-171.52
-43.06
39
A
PRO
7
-65.08
-77.25
39
A
THR
10
-176.12
-40.19
39
A
ASN
12
-89.92
-159.86
39
A
ILE
15
-90.95
-60.97
39
A
GLU
26
49.32
26.00
39
A
LYS
27
-153.75
-80.18
39
A
ALA
32
169.49
64.80
39
A
HIS
34
-177.84
-42.12
39
A
HIS
51
45.29
-159.18
39
A
ALA
78
-90.72
-73.40
39
A
THR
79
-160.30
75.14
39
A
LEU
85
61.30
160.38
40
A
SER
2
59.93
86.70
40
A
GLU
9
60.14
104.68
40
A
ILE
15
-90.04
-64.56
40
A
GLU
26
46.02
27.45
40
A
LYS
27
-161.70
-69.56
40
A
GLN
31
177.72
-35.68
40
A
HIS
34
-164.54
-43.86
40
A
PRO
50
-42.31
-14.28
40
A
HIS
51
52.94
-89.97
40
A
LYS
54
-89.36
-74.17
40
A
LEU
62
-49.91
156.51
40
A
ALA
78
-90.09
-60.35
40
A
THR
79
-160.10
33.54
40
A
LYS
84
-147.88
-53.36
41
A
LYS
3
-176.11
134.21
41
A
GLU
9
-62.68
-74.71
41
A
ILE
15
-90.79
-62.91
41
A
PHE
25
-78.07
48.29
41
A
SER
30
-47.57
156.80
41
A
GLN
31
-90.67
58.51
41
A
ALA
32
177.86
86.93
41
A
HIS
34
-140.89
-47.97
41
A
HIS
51
81.10
-120.52
41
A
LYS
52
-37.44
140.26
41
A
LYS
54
-90.44
-70.27
41
A
VAL
65
-148.37
-74.55
42
A
SER
2
60.17
-172.75
42
A
THR
10
47.26
90.51
42
A
LYS
27
-163.60
-67.45
42
A
GLN
31
-97.51
34.01
42
A
ALA
32
175.45
90.24
42
A
ILE
33
-66.81
-118.56
42
A
LYS
35
167.63
-28.19
42
A
HIS
51
82.22
172.69
42
A
LYS
52
76.57
-75.82
42
A
ILE
53
60.27
85.63
42
A
SER
55
-152.86
-65.67
42
A
LEU
62
-51.53
108.09
42
A
THR
67
49.24
-92.50
42
A
THR
79
-130.90
-43.56
42
A
LYS
81
-154.43
-73.58
42
A
ARG
83
-176.17
43.69
42
A
LYS
84
-97.31
39.19
42
A
GLU
86
58.81
176.11
43
A
SER
2
-142.52
-56.17
43
A
LYS
5
42.98
-164.76
43
A
GLU
9
60.05
179.50
43
A
PHE
25
-33.70
-36.68
43
A
LYS
27
-152.90
-75.71
43
A
SER
30
-69.07
-84.56
43
A
GLN
31
-156.35
-43.19
43
A
ALA
32
-98.79
43.24
43
A
PRO
50
-45.00
-12.88
43
A
HIS
51
79.69
-166.24
43
A
LYS
52
63.41
111.43
43
A
SER
55
-167.26
-62.89
43
A
LYS
68
64.37
-88.12
43
A
LEU
77
-92.30
31.47
43
A
THR
79
-155.66
-64.84
43
A
LYS
84
-172.03
41.97
43
A
GLU
86
-142.81
59.31
44
A
GLU
9
60.34
79.34
44
A
ASN
12
-96.08
-151.32
44
A
PHE
25
-33.62
-37.82
44
A
LYS
27
-172.32
-66.53
44
A
VAL
29
-150.41
-41.39
44
A
SER
30
-60.59
95.58
44
A
GLN
31
179.39
-77.03
44
A
ALA
32
-178.89
58.62
44
A
HIS
51
71.46
139.29
44
A
LYS
52
82.37
-55.56
44
A
ILE
53
43.79
-166.05
44
A
LYS
54
-90.47
-74.43
44
A
LEU
62
-53.42
109.69
44
A
THR
67
-177.00
-39.43
44
A
LYS
68
-152.60
-43.51
44
A
LYS
84
-174.98
-57.59
44
A
GLU
86
59.14
75.03
45
A
LYS
3
-158.95
31.69
45
A
LYS
5
61.74
-89.32
45
A
ILE
15
-70.60
-70.24
45
A
GLU
26
39.47
32.67
45
A
LYS
27
-161.80
-67.27
45
A
VAL
29
-150.92
-44.65
45
A
GLN
31
174.67
-77.35
45
A
ALA
32
176.61
43.51
45
A
PRO
50
-62.49
23.21
45
A
HIS
51
41.68
-162.70
45
A
LYS
52
62.79
118.96
45
A
PRO
63
-64.84
99.80
45
A
LYS
68
-173.95
-51.69
45
A
ALA
78
-90.45
-67.20
45
A
THR
79
-136.26
-49.02
45
A
LEU
82
-105.08
55.33
45
A
ARG
83
60.27
-173.86
46
A
SER
2
51.29
95.51
46
A
LYS
3
-101.35
-73.16
46
A
GLU
9
-136.24
-61.86
46
A
LYS
27
-167.97
-74.41
46
A
VAL
29
-140.53
35.24
46
A
GLN
31
61.71
-161.02
46
A
ALA
32
-100.94
75.15
46
A
HIS
51
46.14
-162.23
46
A
THR
79
-100.83
-66.14
47
A
SER
2
-133.05
-55.49
47
A
ARG
4
60.03
102.29
47
A
THR
10
-175.81
104.91
47
A
ASN
12
-89.72
-158.76
47
A
GLU
26
83.10
-57.77
47
A
VAL
29
-151.56
-42.72
47
A
SER
30
-57.91
98.86
47
A
GLN
31
-179.86
-73.60
47
A
ALA
32
179.75
55.15
47
A
HIS
51
88.11
-125.44
47
A
LYS
52
-32.06
146.42
47
A
LYS
68
78.77
-74.05
48
A
ARG
4
58.63
-172.83
48
A
LYS
5
-157.47
30.17
48
A
GLU
9
-177.15
39.69
48
A
THR
10
-174.87
79.46
48
A
ASN
12
-134.18
-79.32
48
A
LYS
27
-162.69
-66.65
48
A
VAL
29
-152.71
-51.54
48
A
SER
30
-59.81
90.70
48
A
GLN
31
168.21
-162.03
48
A
HIS
51
81.58
-172.41
48
A
LYS
52
32.10
99.92
48
A
PRO
63
-61.99
91.07
48
A
THR
67
60.55
-156.89
48
A
LYS
84
-173.28
38.22
48
A
LEU
85
-114.32
-70.36
49
A
SER
2
-151.72
-72.60
49
A
ARG
4
-65.78
-79.25
49
A
LYS
5
56.81
-174.58
49
A
PRO
7
-61.10
90.21
49
A
GLN
8
-90.71
48.65
49
A
ILE
15
-90.11
-70.64
49
A
LYS
27
-150.00
-67.40
49
A
GLN
31
-96.48
39.15
49
A
ALA
32
179.40
75.14
49
A
HIS
51
79.13
-175.81
49
A
LYS
52
46.03
85.91
49
A
THR
67
-163.43
-43.77
49
A
LYS
68
-135.85
-41.40
50
A
SER
2
59.88
176.32
50
A
LYS
3
62.06
-89.43
50
A
GLU
9
-103.20
-74.57
50
A
THR
10
-142.44
38.98
50
A
LYS
27
-166.72
-67.45
50
A
GLN
31
64.17
-88.73
50
A
ALA
32
-177.51
83.49
50
A
HIS
51
73.75
50.85
50
A
LYS
52
179.94
152.45
50
A
LEU
62
-53.15
109.33
50
A
VAL
65
-114.50
72.69
50
A
THR
67
-179.33
-39.65
50
A
LYS
68
-147.74
-45.43
50
A
ALA
78
-90.56
-68.41
50
A
LYS
81
-157.79
36.73
50
A
ARG
83
60.01
103.27
50
A
LYS
84
-65.20
-77.33
50
A
LEU
85
-125.19
-71.43
51
A
SER
2
59.44
95.81
51
A
PRO
7
-62.16
-71.02
51
A
GLN
8
-82.32
-73.84
51
A
GLU
9
-178.56
-37.81
51
A
ILE
15
-91.06
-68.94
51
A
PHE
25
-28.95
-48.23
51
A
GLU
26
42.80
29.25
51
A
LYS
27
-150.18
-69.00
51
A
ALA
32
-169.41
92.51
51
A
HIS
34
-130.59
-36.42
51
A
HIS
51
89.87
-94.89
51
A
ILE
53
51.30
139.26
51
A
SER
55
178.25
172.71
51
A
PRO
63
-64.77
89.88
51
A
VAL
65
-92.91
57.64
51
A
LYS
68
76.87
-77.24
51
A
LYS
81
-103.82
61.74
51
A
ARG
83
60.11
104.17
51
A
LYS
84
-108.07
71.96
52
A
SER
2
-150.55
82.66
52
A
LYS
3
-164.90
-47.33
52
A
THR
10
-177.26
-38.78
52
A
ASN
12
-125.11
-71.54
52
A
PHE
25
-29.35
-42.08
52
A
LYS
27
-171.02
-67.51
52
A
VAL
29
-152.66
-43.72
52
A
SER
30
-64.68
93.48
52
A
GLN
31
-176.16
-57.24
52
A
ALA
32
169.08
51.55
52
A
HIS
51
81.38
178.46
52
A
LYS
52
66.87
-85.11
52
A
ILE
53
64.39
112.55
52
A
LYS
54
-90.04
52.61
52
A
VAL
65
-115.27
-78.62
52
A
THR
67
46.65
70.16
52
A
LYS
68
-177.01
-38.79
52
A
ARG
83
-140.60
34.93
52
A
GLU
86
64.93
140.92
53
A
SER
2
-91.44
-71.61
53
A
LYS
3
-164.30
-59.97
53
A
GLN
8
-64.42
-71.95
53
A
GLU
9
60.32
101.88
53
A
LYS
27
-167.52
-67.76
53
A
VAL
29
-152.95
41.75
53
A
SER
30
-56.69
-168.69
53
A
GLN
31
-92.02
31.27
53
A
ALA
32
-162.37
29.71
53
A
HIS
51
78.96
150.56
53
A
LYS
52
84.79
-60.34
53
A
ILE
53
41.71
94.57
53
A
THR
67
50.19
-92.18
53
A
ALA
78
-90.80
-63.54
53
A
THR
79
-160.01
-61.92
53
A
LEU
85
59.91
102.89
54
A
LYS
5
-174.91
56.24
54
A
GLU
9
-160.26
-43.20
54
A
GLU
26
46.03
27.41
54
A
LYS
27
-159.26
-67.93
54
A
HIS
51
46.55
-163.53
54
A
LYS
52
53.38
79.47
54
A
SER
55
-80.15
-79.96
54
A
THR
67
-149.49
-61.77
54
A
THR
79
-97.76
30.07
54
A
ARG
83
-64.44
-162.72
54
A
LYS
84
59.41
79.61
55
A
LYS
3
-153.10
87.09
55
A
LYS
5
-168.60
-74.03
55
A
PRO
7
-61.58
-159.99
55
A
PHE
25
-30.98
-39.80
55
A
LYS
27
-161.49
-67.15
55
A
VAL
29
-153.37
-78.62
55
A
SER
30
-50.96
94.78
55
A
GLN
31
-178.18
-66.82
55
A
ALA
32
175.04
49.48
55
A
HIS
51
80.83
153.85
55
A
LYS
52
62.69
99.67
55
A
SER
55
63.09
108.69
55
A
LYS
68
-125.41
-67.45
55
A
ALA
78
-90.71
-69.75
55
A
THR
79
-159.26
33.33
55
A
LYS
81
-149.21
36.26
55
A
LEU
85
62.37
-89.34
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, 55 STRUCTURES
1
Y
N
A
ILE
15
A
ILE
15
HELX_P
A
GLU
26
A
GLU
26
1
1
12
A
TYR
36
A
TYR
36
HELX_P
A
ALA
47
A
ALA
47
1
2
12
A
GLY
56
A
GLY
56
HELX_P
A
LYS
61
A
LYS
61
1
3
6
A
ILE
69
A
ILE
69
HELX_P
A
ALA
78
A
ALA
78
1
4
10
NUCLEOTIDYLTRANSFERASE (DNA-BINDING)
N-TERMINAL DOMAIN, DNA POLYMERASE BETA, SINGLE-STRANDED DNA-BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEOTIDYLTRANSFERASE (DNA-BINDING)
DPOB_RAT
UNP
1
1
P06766
SKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGK
LRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDI
VLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQL
PSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFD
YIQWRYREPKDRSE
1
86
1BNP
2
87
P06766
A
1
2
87
1
P 1