0.021008
0.000000
0.000000
0.000000
0.019697
0.000000
0.000000
0.000000
0.023775
0.00000
0.00000
0.00000
Gao, Y.-G.
Su, S.-Y.
Robinson, H.
Padmanabhan, S.
Lim, L.
Mccrary, B.S.
Edmondos, S.P.
Shrive, J.W.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
47.600
50.770
42.060
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
O
N
58
N
P
N
59
N
O
N
60
N
O
N
61
N
O
N
62
N
C
N
63
R
C
N
64
N
O
N
65
S
C
N
66
N
O
N
67
N
C
N
68
R
C
Y
69
N
N
Y
70
N
C
Y
71
N
N
Y
72
N
C
Y
73
N
C
N
74
N
N
Y
75
N
N
Y
76
N
C
Y
77
N
N
Y
78
N
C
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
O
N
94
N
P
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
C
N
99
R
C
N
100
N
O
N
101
S
C
N
102
N
O
N
103
N
C
N
104
R
C
N
105
N
N
N
106
N
C
N
107
N
O
N
108
N
N
N
109
N
C
N
110
N
N
N
111
N
C
N
112
N
C
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
O
N
128
N
P
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
C
N
133
R
C
N
134
N
O
N
135
S
C
N
136
N
O
N
137
N
C
N
138
R
C
Y
139
N
N
Y
140
N
C
Y
141
N
N
Y
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
C
N
147
N
N
N
148
N
N
Y
149
N
C
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
O
N
165
N
P
N
166
N
O
N
167
N
O
N
168
N
O
N
169
N
C
N
170
R
C
N
171
N
O
N
172
S
C
N
173
N
O
N
174
N
C
N
175
R
C
N
176
N
N
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
N
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
O
N
228
N
O
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
S
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
N
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
S
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
R
C
N
400
N
O
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
N
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
N
N
440
S
C
N
441
N
C
N
442
N
O
N
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
N
450
N
O
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
N
468
N
C
N
469
N
C
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
Y
77
N
sing
Y
78
N
sing
Y
79
N
doub
N
80
N
sing
Y
81
N
sing
Y
82
N
sing
Y
83
N
doub
N
84
N
sing
Y
85
N
doub
N
86
N
sing
N
87
N
sing
Y
88
N
sing
Y
89
N
doub
N
90
N
sing
Y
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
Y
156
N
doub
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
Y
416
N
doub
Y
417
N
sing
Y
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
Y
444
N
doub
Y
445
N
sing
Y
446
N
sing
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
5
782
786
10.1038/1822
9731772
The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA.
1998
10.2210/pdb1bnz/pdb
pdb_00001bnz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
287
1
IMAGE PLATE
1997-05-15
RIGAKU RAXIS IIC
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
2425.629
5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'
2
syn
polymer
7295.584
DNA-BINDING PROTEIN 7A
1
man
polymer
18.015
water
99
nat
water
no
no
(DG)(DT)(DA)(DA)(DT)(DT)(DA)(DC)
GTAATTAC
B,C
polydeoxyribonucleotide
no
no
MATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKK
MATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
sample
2285
Sulfolobus acidocaldarius
1
2.12
42.0
6.5
pH 6.5
-4.937
1
19
B
66
C
81
1.894
B_DG66:DC81_C
1
-0.869
-0.431
0.023
0.004
6.467
1
20
B
67
C
80
2.064
B_DT67:DA80_C
2
-2.133
-0.145
-0.078
-0.170
20.316
1
20
B
68
C
79
-3.251
B_DA68:DT79_C
3
-8.574
0.048
0.361
-0.288
-20.326
1
20
B
69
C
78
-3.909
B_DA69:DT78_C
4
10.130
0.103
0.168
0.109
4.450
1
20
B
70
C
77
1.682
B_DT70:DA77_C
5
-7.485
-0.081
-0.066
-0.120
-0.893
1
20
B
71
C
76
1.324
B_DT71:DA76_C
6
-15.288
-0.090
0.084
-0.126
5.977
1
20
B
72
C
75
0.928
B_DA72:DT75_C
7
-7.726
-0.405
0.176
-0.389
11.927
1
19
B
73
C
74
2.691
B_DC73:DG74_C
8
-5.135
-0.039
-0.345
-0.015
3.112
28.431
B
B
66
67
3.539
C
C
81
80
3.149
1.737
-0.203
-0.420
BB_DG66DT67:DA80DC81_CC
1
0.713
-1.453
28.370
-1.238
0.570
3.196
26.010
B
B
67
68
8.516
C
C
80
79
3.191
3.816
-0.147
0.252
BB_DT67DA68:DT79DA80_CC
2
-1.922
4.289
25.662
-0.470
-0.193
3.643
60.326
B
B
68
69
64.972
C
C
79
78
5.928
54.144
0.146
0.952
BB_DA68DA69:DT78DT79_CC
3
-2.374
2.849
27.564
-4.736
-0.394
2.586
22.491
B
B
69
70
23.521
C
C
78
77
2.950
8.927
0.390
-0.308
BB_DA69DT70:DA77DT78_CC
4
-0.335
0.883
20.662
-3.694
-1.109
3.491
30.875
B
B
70
71
3.939
C
C
77
76
3.533
2.095
0.031
-0.520
BB_DT70DT71:DA76DA77_CC
5
0.282
-0.529
30.804
-1.415
0.001
3.332
37.342
B
B
71
72
6.315
C
C
76
75
3.269
4.035
-0.200
0.734
BB_DT71DA72:DT75DA76_CC
6
-1.342
2.100
37.107
0.607
0.132
3.206
29.537
B
B
72
73
4.959
C
C
75
74
3.243
2.516
0.220
-0.278
BB_DA72DC73:DG74DT75_CC
7
4.435
-8.740
29.103
-1.077
0.503
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Other
Refinement description
Data collection
Database references
1
0
1998-11-11
1
1
2011-05-09
1
2
2011-07-13
1
3
2011-07-27
1
4
2017-10-04
1
5
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
BNL
Y
NDB
1998-07-31
REL
HOH
water
HOH
1006
3
HOH
HOH
1006
B
HOH
1017
3
HOH
HOH
1017
B
HOH
1020
3
HOH
HOH
1020
B
HOH
1023
3
HOH
HOH
1023
B
HOH
1030
3
HOH
HOH
1030
B
HOH
1038
3
HOH
HOH
1038
B
HOH
1089
3
HOH
HOH
1089
B
HOH
1093
3
HOH
HOH
1093
B
HOH
1094
3
HOH
HOH
1094
B
HOH
1107
3
HOH
HOH
1107
B
HOH
1129
3
HOH
HOH
1129
B
HOH
1130
3
HOH
HOH
1130
B
HOH
1143
3
HOH
HOH
1143
B
HOH
1176
3
HOH
HOH
1176
B
HOH
1180
3
HOH
HOH
1180
B
HOH
2055
3
HOH
HOH
2055
B
HOH
2097
3
HOH
HOH
2097
B
HOH
2110
3
HOH
HOH
2110
B
HOH
2152
3
HOH
HOH
2152
B
HOH
2164
3
HOH
HOH
2164
B
HOH
2165
3
HOH
HOH
2165
B
HOH
2169
3
HOH
HOH
2169
B
HOH
2172
3
HOH
HOH
2172
B
HOH
2173
3
HOH
HOH
2173
B
HOH
2177
3
HOH
HOH
2177
B
HOH
3032
3
HOH
HOH
3032
B
HOH
3099
3
HOH
HOH
3099
B
HOH
3108
3
HOH
HOH
3108
B
HOH
4037
3
HOH
HOH
4037
B
HOH
4064
3
HOH
HOH
4064
B
HOH
4123
3
HOH
HOH
4123
B
HOH
4172
3
HOH
HOH
4172
B
HOH
1047
3
HOH
HOH
1047
C
HOH
1076
3
HOH
HOH
1076
C
HOH
1100
3
HOH
HOH
1100
C
HOH
1105
3
HOH
HOH
1105
C
HOH
1141
3
HOH
HOH
1141
C
HOH
1154
3
HOH
HOH
1154
C
HOH
2012
3
HOH
HOH
2012
C
HOH
2066
3
HOH
HOH
2066
C
HOH
2095
3
HOH
HOH
2095
C
HOH
2102
3
HOH
HOH
2102
C
HOH
2151
3
HOH
HOH
2151
C
HOH
2156
3
HOH
HOH
2156
C
HOH
3139
3
HOH
HOH
3139
C
HOH
3151
3
HOH
HOH
3151
C
HOH
3171
3
HOH
HOH
3171
C
HOH
4120
3
HOH
HOH
4120
C
HOH
4140
3
HOH
HOH
4140
C
HOH
1001
3
HOH
HOH
1001
A
HOH
1016
3
HOH
HOH
1016
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1045
3
HOH
HOH
1045
A
HOH
1068
3
HOH
HOH
1068
A
HOH
1097
3
HOH
HOH
1097
A
HOH
1101
3
HOH
HOH
1101
A
HOH
1104
3
HOH
HOH
1104
A
HOH
1118
3
HOH
HOH
1118
A
HOH
1126
3
HOH
HOH
1126
A
HOH
1131
3
HOH
HOH
1131
A
HOH
1137
3
HOH
HOH
1137
A
HOH
1144
3
HOH
HOH
1144
A
HOH
1147
3
HOH
HOH
1147
A
HOH
1149
3
HOH
HOH
1149
A
HOH
1166
3
HOH
HOH
1166
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2112
3
HOH
HOH
2112
A
HOH
2148
3
HOH
HOH
2148
A
HOH
2167
3
HOH
HOH
2167
A
HOH
3031
3
HOH
HOH
3031
A
HOH
3068
3
HOH
HOH
3068
A
HOH
3095
3
HOH
HOH
3095
A
HOH
3097
3
HOH
HOH
3097
A
HOH
3125
3
HOH
HOH
3125
A
HOH
3126
3
HOH
HOH
3126
A
HOH
3131
3
HOH
HOH
3131
A
HOH
3142
3
HOH
HOH
3142
A
HOH
3146
3
HOH
HOH
3146
A
HOH
3163
3
HOH
HOH
3163
A
HOH
3172
3
HOH
HOH
3172
A
HOH
3173
3
HOH
HOH
3173
A
HOH
4024
3
HOH
HOH
4024
A
HOH
4028
3
HOH
HOH
4028
A
HOH
4040
3
HOH
HOH
4040
A
HOH
4056
3
HOH
HOH
4056
A
HOH
4065
3
HOH
HOH
4065
A
HOH
4072
3
HOH
HOH
4072
A
HOH
4105
3
HOH
HOH
4105
A
HOH
4113
3
HOH
HOH
4113
A
HOH
4142
3
HOH
HOH
4142
A
HOH
4148
3
HOH
HOH
4148
A
G
66
n
1
DG
66
B
T
67
n
2
DT
67
B
A
68
n
3
DA
68
B
A
69
n
4
DA
69
B
T
70
n
5
DT
70
B
T
71
n
6
DT
71
B
A
72
n
7
DA
72
B
C
73
n
8
DC
73
B
G
74
n
1
DG
74
C
T
75
n
2
DT
75
C
A
76
n
3
DA
76
C
A
77
n
4
DA
77
C
T
78
n
5
DT
78
C
T
79
n
6
DT
79
C
A
80
n
7
DA
80
C
C
81
n
8
DC
81
C
MET
1
n
1
MET
1
A
ALA
2
n
2
ALA
2
A
THR
3
n
3
THR
3
A
VAL
4
n
4
VAL
4
A
LYS
5
n
5
LYS
5
A
PHE
6
n
6
PHE
6
A
LYS
7
n
7
LYS
7
A
TYR
8
n
8
TYR
8
A
LYS
9
n
9
LYS
9
A
GLY
10
n
10
GLY
10
A
GLU
11
n
11
GLU
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
GLU
14
n
14
GLU
14
A
VAL
15
n
15
VAL
15
A
ASP
16
n
16
ASP
16
A
ILE
17
n
17
ILE
17
A
SER
18
n
18
SER
18
A
LYS
19
n
19
LYS
19
A
ILE
20
n
20
ILE
20
A
LYS
21
n
21
LYS
21
A
LYS
22
n
22
LYS
22
A
VAL
23
n
23
VAL
23
A
TRP
24
n
24
TRP
24
A
ARG
25
n
25
ARG
25
A
VAL
26
n
26
VAL
26
A
GLY
27
n
27
GLY
27
A
LYS
28
n
28
LYS
28
A
MET
29
n
29
MET
29
A
ILE
30
n
30
ILE
30
A
SER
31
n
31
SER
31
A
PHE
32
n
32
PHE
32
A
THR
33
n
33
THR
33
A
TYR
34
n
34
TYR
34
A
ASP
35
n
35
ASP
35
A
GLU
36
n
36
GLU
36
A
GLY
37
n
37
GLY
37
A
GLY
38
n
38
GLY
38
A
GLY
39
n
39
GLY
39
A
LYS
40
n
40
LYS
40
A
THR
41
n
41
THR
41
A
GLY
42
n
42
GLY
42
A
ARG
43
n
43
ARG
43
A
GLY
44
n
44
GLY
44
A
ALA
45
n
45
ALA
45
A
VAL
46
n
46
VAL
46
A
SER
47
n
47
SER
47
A
GLU
48
n
48
GLU
48
A
LYS
49
n
49
LYS
49
A
ASP
50
n
50
ASP
50
A
ALA
51
n
51
ALA
51
A
PRO
52
n
52
PRO
52
A
LYS
53
n
53
LYS
53
A
GLU
54
n
54
GLU
54
A
LEU
55
n
55
LEU
55
A
LEU
56
n
56
LEU
56
A
GLN
57
n
57
GLN
57
A
MET
58
n
58
MET
58
A
LEU
59
n
59
LEU
59
A
GLU
60
n
60
GLU
60
A
LYS
61
n
61
LYS
61
A
GLN
62
n
62
GLN
62
A
LYS
63
n
63
LYS
63
A
LYS
64
n
64
LYS
64
A
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
6
C
N
PHE
6
A
O
LYS
13
C
O
LYS
13
A
N
VAL
26
C
N
VAL
26
A
O
MET
29
C
O
MET
29
A
N
PHE
32
C
N
PHE
32
A
O
GLY
44
C
O
GLY
44
1
A
ALA
2
74.97
-144.32
1
A
LYS
21
-96.01
-62.24
1
A
GLN
62
-105.37
-86.10
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM_NDBX_HIGH.DNA
TOP_NDBX.DNA
0.2680000
0.1680000
0.1680000
2.0
6.0
5682
76.0
RANDOM
1
4.0
MIR
2.0
6.0
99
931
0
322
510
0.010
1.37
32.0
1.9
10
1BNZ
7607
1
0.0750000
1
3.0
94.1
model building
PHASIT
refinement
X-PLOR
3.1
phasing
PHASIT
SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
A
ILE
17
C
ILE
17
HELX_P
A
LYS
19
C
LYS
19
5
1
3
A
GLU
48
C
GLU
48
HELX_P
A
ASP
50
C
ASP
50
5
2
3
A
LYS
53
C
LYS
53
HELX_P
A
GLN
62
C
GLN
62
1
3
10
hydrog
WATSON-CRICK
B
DG
66
A
N1
DG
1
1_555
C
DC
81
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
66
A
N2
DG
1
1_555
C
DC
81
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
66
A
O6
DG
1
1_555
C
DC
81
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
DT
67
A
N3
DT
2
1_555
C
DA
80
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
67
A
O4
DT
2
1_555
C
DA
80
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DA
68
A
N1
DA
3
1_555
C
DT
79
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
DA
68
A
N6
DA
3
1_555
C
DT
79
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
DA
69
A
N1
DA
4
1_555
C
DT
78
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
69
A
N6
DA
4
1_555
C
DT
78
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
B
DT
70
A
N3
DT
5
1_555
C
DA
77
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
70
A
O4
DT
5
1_555
C
DA
77
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
71
A
N3
DT
6
1_555
C
DA
76
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
71
A
O4
DT
6
1_555
C
DA
76
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
B
DA
72
A
N1
DA
7
1_555
C
DT
75
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
B
DA
72
A
N6
DA
7
1_555
C
DT
75
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
B
DC
73
A
N3
DC
8
1_555
C
DG
74
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
73
A
N4
DC
8
1_555
C
DG
74
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
73
A
O2
DC
8
1_555
C
DG
74
B
N2
DG
1
1_555
DNA BINDING PROTEIN/DNA
PROTEIN-DNA INTERACTION, DNA BINDING PROTEIN-DNA COMPLEX
DN71_SULSOX
UNP
2
P80170
1BNZ
PDB
1
1BNZ
1
63
1BNZ
2
64
P80170
A
1
2
64
66
73
1BNZ
66
73
1BNZ
B
2
1
8
74
81
1BNZ
74
81
1BNZ
C
2
1
8
1
GLN
conflict
GLU
14
1BNZ
A
P80170
UNP
13
14
2
3
anti-parallel
anti-parallel
anti-parallel
A
THR
3
C
THR
3
A
TYR
8
C
TYR
8
A
GLU
11
C
GLU
11
A
ASP
16
C
ASP
16
A
ILE
20
C
ILE
20
A
VAL
26
C
VAL
26
A
MET
29
C
MET
29
A
ASP
35
C
ASP
35
A
THR
41
C
THR
41
A
SER
47
C
SER
47
19
orthorhombic
P 21 21 21