0.014771 0.000000 0.000000 0.000000 0.013793 0.000000 0.000000 0.000000 0.022573 0.00000 0.00000 0.00000 Kurihara, H. Nakamura, K.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 67.700 72.500 44.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 255 310 320 10.1006/jmbi.1996.0025 8551522 The crystal structure of ribonuclease Rh from Rhizopus niveus at 2.0 A resolution. 1996 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 IMAGE PLATE RIGAKU NI FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 BL-6A Photon Factory 1.5418 1.5418 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 24096.203 PROTEIN (RIBONUCLEASE RH) 3.1.27.1 1 nat polymer no no SSCSSTALSCSNSANSDTCCSPEYGLVVLNMQWAPGYGPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKD SSLYNSMLTYWPSNQGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGT YTATEMQSAIESYFGAKAKIDCSSGTLSDVALYFYVRGRDTYVITDALSTGSCSGDVEYPTK SSCSSTALSCSNSANSDTCCSPEYGLVVLNMQWAPGYGPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKD SSLYNSMLTYWPSNQGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGT YTATEMQSAIESYFGAKAKIDCSSGTLSDVALYFYVRGRDTYVITDALSTGSCSGDVEYPTK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rhizopus sample 4844 Rhizopus niveus 2 2.6 45.46 6.7 pH 6.7 diffrn_radiation diffrn_source repository Initial release Version format compliance Version format compliance Data collection 1 0 1998-08-12 1 1 2007-10-16 1 2 2011-07-13 1 3 2018-06-13 _diffrn_radiation.pdbx_diffrn_protocol _diffrn_source.pdbx_wavelength_list BNL Y RCSB 1998-08-05 REL SER 1 n 1 SER 1 A SER 2 n 2 SER 2 A CYS 3 n 3 CYS 3 A SER 4 n 4 SER 4 A SER 5 n 5 SER 5 A THR 6 n 6 THR 6 A ALA 7 n 7 ALA 7 A LEU 8 n 8 LEU 8 A SER 9 n 9 SER 9 A CYS 10 n 10 CYS 10 A SER 11 n 11 SER 11 A ASN 12 n 12 ASN 12 A SER 13 n 13 SER 13 A ALA 14 n 14 ALA 14 A ASN 15 n 15 ASN 15 A SER 16 n 16 SER 16 A ASP 17 n 17 ASP 17 A THR 18 n 18 THR 18 A CYS 19 n 19 CYS 19 A CYS 20 n 20 CYS 20 A SER 21 n 21 SER 21 A PRO 22 n 22 PRO 22 A GLU 23 n 23 GLU 23 A TYR 24 n 24 TYR 24 A GLY 25 n 25 GLY 25 A LEU 26 n 26 LEU 26 A VAL 27 n 27 VAL 27 A VAL 28 n 28 VAL 28 A LEU 29 n 29 LEU 29 A ASN 30 n 30 ASN 30 A MET 31 n 31 MET 31 A GLN 32 n 32 GLN 32 A TRP 33 n 33 TRP 33 A ALA 34 n 34 ALA 34 A PRO 35 n 35 PRO 35 A GLY 36 n 36 GLY 36 A TYR 37 n 37 TYR 37 A GLY 38 n 38 GLY 38 A PRO 39 n 39 PRO 39 A ASP 40 n 40 ASP 40 A ASN 41 n 41 ASN 41 A ALA 42 n 42 ALA 42 A PHE 43 n 43 PHE 43 A THR 44 n 44 THR 44 A LEU 45 n 45 LEU 45 A HIS 46 n 46 HIS 46 A GLY 47 n 47 GLY 47 A LEU 48 n 48 LEU 48 A TRP 49 n 49 TRP 49 A PRO 50 n 50 PRO 50 A ASP 51 n 51 ASP 51 A LYS 52 n 52 LYS 52 A CYS 53 n 53 CYS 53 A SER 54 n 54 SER 54 A GLY 55 n 55 GLY 55 A ALA 56 n 56 ALA 56 A TYR 57 n 57 TYR 57 A ALA 58 n 58 ALA 58 A PRO 59 n 59 PRO 59 A SER 60 n 60 SER 60 A GLY 61 n 61 GLY 61 A GLY 62 n 62 GLY 62 A CYS 63 n 63 CYS 63 A ASP 64 n 64 ASP 64 A SER 65 n 65 SER 65 A ASN 66 n 66 ASN 66 A ARG 67 n 67 ARG 67 A ALA 68 n 68 ALA 68 A SER 69 n 69 SER 69 A SER 70 n 70 SER 70 A SER 71 n 71 SER 71 A ILE 72 n 72 ILE 72 A ALA 73 n 73 ALA 73 A SER 74 n 74 SER 74 A VAL 75 n 75 VAL 75 A ILE 76 n 76 ILE 76 A LYS 77 n 77 LYS 77 A SER 78 n 78 SER 78 A LYS 79 n 79 LYS 79 A ASP 80 n 80 ASP 80 A SER 81 n 81 SER 81 A SER 82 n 82 SER 82 A LEU 83 n 83 LEU 83 A TYR 84 n 84 TYR 84 A ASN 85 n 85 ASN 85 A SER 86 n 86 SER 86 A MET 87 n 87 MET 87 A LEU 88 n 88 LEU 88 A THR 89 n 89 THR 89 A TYR 90 n 90 TYR 90 A TRP 91 n 91 TRP 91 A PRO 92 n 92 PRO 92 A SER 93 n 93 SER 93 A ASN 94 n 94 ASN 94 A GLN 95 n 95 GLN 95 A GLY 96 n 96 GLY 96 A ASN 97 n 97 ASN 97 A ASN 98 n 98 ASN 98 A ASN 99 n 99 ASN 99 A VAL 100 n 100 VAL 100 A PHE 101 n 101 PHE 101 A TRP 102 n 102 TRP 102 A SER 103 n 103 SER 103 A HIS 104 n 104 HIS 104 A GLU 105 n 105 GLU 105 A TRP 106 n 106 TRP 106 A SER 107 n 107 SER 107 A LYS 108 n 108 LYS 108 A HIS 109 n 109 HIS 109 A GLY 110 n 110 GLY 110 A THR 111 n 111 THR 111 A CYS 112 n 112 CYS 112 A VAL 113 n 113 VAL 113 A SER 114 n 114 SER 114 A THR 115 n 115 THR 115 A TYR 116 n 116 TYR 116 A ASP 117 n 117 ASP 117 A PRO 118 n 118 PRO 118 A ASP 119 n 119 ASP 119 A CYS 120 n 120 CYS 120 A TYR 121 n 121 TYR 121 A ASP 122 n 122 ASP 122 A ASN 123 n 123 ASN 123 A TYR 124 n 124 TYR 124 A GLU 125 n 125 GLU 125 A GLU 126 n 126 GLU 126 A GLY 127 n 127 GLY 127 A GLU 128 n 128 GLU 128 A ASP 129 n 129 ASP 129 A ILE 130 n 130 ILE 130 A VAL 131 n 131 VAL 131 A ASP 132 n 132 ASP 132 A TYR 133 n 133 TYR 133 A PHE 134 n 134 PHE 134 A GLN 135 n 135 GLN 135 A LYS 136 n 136 LYS 136 A ALA 137 n 137 ALA 137 A MET 138 n 138 MET 138 A ASP 139 n 139 ASP 139 A LEU 140 n 140 LEU 140 A ARG 141 n 141 ARG 141 A SER 142 n 142 SER 142 A GLN 143 n 143 GLN 143 A TYR 144 n 144 TYR 144 A ASN 145 n 145 ASN 145 A VAL 146 n 146 VAL 146 A TYR 147 n 147 TYR 147 A LYS 148 n 148 LYS 148 A ALA 149 n 149 ALA 149 A PHE 150 n 150 PHE 150 A SER 151 n 151 SER 151 A SER 152 n 152 SER 152 A ASN 153 n 153 ASN 153 A GLY 154 n 154 GLY 154 A ILE 155 n 155 ILE 155 A THR 156 n 156 THR 156 A PRO 157 n 157 PRO 157 A GLY 158 n 158 GLY 158 A GLY 159 n 159 GLY 159 A THR 160 n 160 THR 160 A TYR 161 n 161 TYR 161 A THR 162 n 162 THR 162 A ALA 163 n 163 ALA 163 A THR 164 n 164 THR 164 A GLU 165 n 165 GLU 165 A MET 166 n 166 MET 166 A GLN 167 n 167 GLN 167 A SER 168 n 168 SER 168 A ALA 169 n 169 ALA 169 A ILE 170 n 170 ILE 170 A GLU 171 n 171 GLU 171 A SER 172 n 172 SER 172 A TYR 173 n 173 TYR 173 A PHE 174 n 174 PHE 174 A GLY 175 n 175 GLY 175 A ALA 176 n 176 ALA 176 A LYS 177 n 177 LYS 177 A ALA 178 n 178 ALA 178 A LYS 179 n 179 LYS 179 A ILE 180 n 180 ILE 180 A ASP 181 n 181 ASP 181 A CYS 182 n 182 CYS 182 A SER 183 n 183 SER 183 A SER 184 n 184 SER 184 A GLY 185 n 185 GLY 185 A THR 186 n 186 THR 186 A LEU 187 n 187 LEU 187 A SER 188 n 188 SER 188 A ASP 189 n 189 ASP 189 A VAL 190 n 190 VAL 190 A ALA 191 n 191 ALA 191 A LEU 192 n 192 LEU 192 A TYR 193 n 193 TYR 193 A PHE 194 n 194 PHE 194 A TYR 195 n 195 TYR 195 A VAL 196 n 196 VAL 196 A ARG 197 n 197 ARG 197 A GLY 198 n 198 GLY 198 A ARG 199 n 199 ARG 199 A ASP 200 n 200 ASP 200 A THR 201 n 201 THR 201 A TYR 202 n 202 TYR 202 A VAL 203 n 203 VAL 203 A ILE 204 n 204 ILE 204 A THR 205 n 205 THR 205 A ASP 206 n 206 ASP 206 A ALA 207 n 207 ALA 207 A LEU 208 n 208 LEU 208 A SER 209 n 209 SER 209 A THR 210 n 210 THR 210 A GLY 211 n 211 GLY 211 A SER 212 n 212 SER 212 A CYS 213 n 213 CYS 213 A SER 214 n 214 SER 214 A GLY 215 n 215 GLY 215 A ASP 216 n 216 ASP 216 A VAL 217 n 217 VAL 217 A GLU 218 n 218 GLU 218 A TYR 219 n 219 TYR 219 A PRO 220 n 220 PRO 220 A THR 221 n 221 THR 221 A LYS 222 n 222 LYS 222 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 201 A O THR 201 A N ARG 197 A N ARG 197 A O VAL 190 A O VAL 190 A N MET 31 A N MET 31 A O LEU 26 A O LEU 26 A N ASP 51 A N ASP 51 A O GLY 159 A O GLY 159 A N TYR 219 A N TYR 219 A O LYS 179 A O LYS 179 A N ALA 191 A N ALA 191 1 -10.76 1.70 111.00 100.24 A A A CB CG CD2 LEU LEU LEU 45 45 45 N 1 -5.05 0.80 107.30 102.25 A A A CE2 CD2 CG TRP TRP TRP 49 49 49 N 1 4.78 0.50 120.30 125.08 A A A NE CZ NH1 ARG ARG ARG 67 67 67 N 1 -5.27 0.50 120.30 115.03 A A A NE CZ NH2 ARG ARG ARG 67 67 67 N 1 5.05 0.80 106.30 111.35 A A A CD1 CG CD2 TRP TRP TRP 91 91 91 N 1 7.01 0.80 106.30 113.31 A A A CD1 CG CD2 TRP TRP TRP 106 106 106 N 1 -6.54 1.00 110.10 103.56 A A A CG CD1 NE1 TRP TRP TRP 106 106 106 N 1 -5.43 0.80 107.30 101.87 A A A CE2 CD2 CG TRP TRP TRP 106 106 106 N 1 3.49 0.50 120.30 123.79 A A A NE CZ NH1 ARG ARG ARG 141 141 141 N 1 -6.81 0.50 120.30 113.49 A A A NE CZ NH2 ARG ARG ARG 141 141 141 N 1 15.26 2.20 113.40 128.66 A A A CA CB CG LYS LYS LYS 148 148 148 N 1 -3.70 0.60 121.00 117.30 A A A CB CG CD2 TYR TYR TYR 219 219 219 N 1 A A NE2 CD2 HIS HIS 46 46 -0.094 0.011 1.373 1.279 N 1 A A NE2 CD2 HIS HIS 109 109 -0.069 0.011 1.373 1.304 N 1 A SER 2 133.79 158.03 1 A SER 4 -45.05 83.11 1 A ASP 64 -164.45 103.33 1 A ASP 80 -163.96 102.69 1 A ASN 97 -168.25 88.19 1 A ASN 123 -158.06 76.40 1 A TYR 144 -103.66 70.58 1 A ASP 200 -157.57 36.31 1 A SER 209 -178.69 140.92 0.185 0.185 2.00 8.00 11745 78.2 1 2.0 MIR 2.00 8.00 0 1688 0 0 1688 0.016 3.3 26.7 1.0 2.0 8.0 1BOL 11745 2.0 0.0334 1 2.5 78.2 refinement X-PLOR PROTEIN (RIBONUCLEASE RH) THE CRYSTAL STRUCTURE OF RIBONUCLEASE RH FROM RHIZOPUS NIVEUS AT 2.0 A RESOLUTION 1 N N A ILE 72 A ILE 72 HELX_P A LYS 79 A LYS 79 1 1 8 A SER 81 A SER 81 HELX_P A TYR 90 A TYR 90 1 2 10 A ASN 98 A ASN 98 HELX_P A LYS 108 A LYS 108 1 3 11 A GLY 110 A GLY 110 HELX_P A CYS 112 A CYS 112 5 4 3 A SER 114 A SER 114 HELX_P A TYR 116 A TYR 116 5 5 3 A PRO 118 A PRO 118 HELX_P A CYS 120 A CYS 120 5 6 3 A GLU 128 A GLU 128 HELX_P A GLN 143 A GLN 143 1 7 16 A VAL 146 A VAL 146 HELX_P A ASN 153 A ASN 153 1 8 8 A ALA 163 A ALA 163 HELX_P A PHE 174 A PHE 174 1 9 12 disulf 2.029 A CYS 3 A SG CYS 3 1_555 A CYS 20 A SG CYS 20 1_555 disulf 2.037 A CYS 19 A SG CYS 19 1_555 A CYS 120 A SG CYS 120 1_555 disulf 2.020 A CYS 10 A SG CYS 10 1_555 A CYS 53 A SG CYS 53 1_555 disulf 2.023 A CYS 63 A SG CYS 63 1_555 A CYS 112 A SG CYS 112 1_555 disulf 1.992 A CYS 182 A SG CYS 182 1_555 A CYS 213 A SG CYS 213 1_555 HYDROLASE RIBONUCLEASES, HYDROLASE RNRH_RHINI UNP 1 P08056 17 238 1BOL 1 222 P08056 A 1 1 222 4 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 201 A THR 201 A THR 205 A THR 205 A ASP 189 A ASP 189 A ARG 197 A ARG 197 A LEU 26 A LEU 26 A GLN 32 A GLN 32 A THR 44 A THR 44 A ASP 51 A ASP 51 A GLY 159 A GLY 159 A THR 162 A THR 162 A ASP 216 A ASP 216 A TYR 219 A TYR 219 A LYS 179 A LYS 179 A SER 183 A SER 183 A THR 186 A THR 186 A ALA 191 A ALA 191 ACTIVE SITE Author 3 A HIS 46 A HIS 46 3 1_555 A HIS 109 A HIS 109 3 1_555 A GLU 105 A GLU 105 3 1_555 19 P 21 21 21