0.014771
0.000000
0.000000
0.000000
0.013793
0.000000
0.000000
0.000000
0.022573
0.00000
0.00000
0.00000
Kurihara, H.
Nakamura, K.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
67.700
72.500
44.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
255
310
320
10.1006/jmbi.1996.0025
8551522
The crystal structure of ribonuclease Rh from Rhizopus niveus at 2.0 A resolution.
1996
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
IMAGE PLATE
RIGAKU
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
BL-6A
Photon Factory
1.5418
1.5418
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
24096.203
PROTEIN (RIBONUCLEASE RH)
3.1.27.1
1
nat
polymer
no
no
SSCSSTALSCSNSANSDTCCSPEYGLVVLNMQWAPGYGPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKD
SSLYNSMLTYWPSNQGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGT
YTATEMQSAIESYFGAKAKIDCSSGTLSDVALYFYVRGRDTYVITDALSTGSCSGDVEYPTK
SSCSSTALSCSNSANSDTCCSPEYGLVVLNMQWAPGYGPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKD
SSLYNSMLTYWPSNQGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGT
YTATEMQSAIESYFGAKAKIDCSSGTLSDVALYFYVRGRDTYVITDALSTGSCSGDVEYPTK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rhizopus
sample
4844
Rhizopus niveus
2
2.6
45.46
6.7
pH 6.7
diffrn_radiation
diffrn_source
repository
Initial release
Version format compliance
Version format compliance
Data collection
1
0
1998-08-12
1
1
2007-10-16
1
2
2011-07-13
1
3
2018-06-13
_diffrn_radiation.pdbx_diffrn_protocol
_diffrn_source.pdbx_wavelength_list
BNL
Y
RCSB
1998-08-05
REL
SER
1
n
1
SER
1
A
SER
2
n
2
SER
2
A
CYS
3
n
3
CYS
3
A
SER
4
n
4
SER
4
A
SER
5
n
5
SER
5
A
THR
6
n
6
THR
6
A
ALA
7
n
7
ALA
7
A
LEU
8
n
8
LEU
8
A
SER
9
n
9
SER
9
A
CYS
10
n
10
CYS
10
A
SER
11
n
11
SER
11
A
ASN
12
n
12
ASN
12
A
SER
13
n
13
SER
13
A
ALA
14
n
14
ALA
14
A
ASN
15
n
15
ASN
15
A
SER
16
n
16
SER
16
A
ASP
17
n
17
ASP
17
A
THR
18
n
18
THR
18
A
CYS
19
n
19
CYS
19
A
CYS
20
n
20
CYS
20
A
SER
21
n
21
SER
21
A
PRO
22
n
22
PRO
22
A
GLU
23
n
23
GLU
23
A
TYR
24
n
24
TYR
24
A
GLY
25
n
25
GLY
25
A
LEU
26
n
26
LEU
26
A
VAL
27
n
27
VAL
27
A
VAL
28
n
28
VAL
28
A
LEU
29
n
29
LEU
29
A
ASN
30
n
30
ASN
30
A
MET
31
n
31
MET
31
A
GLN
32
n
32
GLN
32
A
TRP
33
n
33
TRP
33
A
ALA
34
n
34
ALA
34
A
PRO
35
n
35
PRO
35
A
GLY
36
n
36
GLY
36
A
TYR
37
n
37
TYR
37
A
GLY
38
n
38
GLY
38
A
PRO
39
n
39
PRO
39
A
ASP
40
n
40
ASP
40
A
ASN
41
n
41
ASN
41
A
ALA
42
n
42
ALA
42
A
PHE
43
n
43
PHE
43
A
THR
44
n
44
THR
44
A
LEU
45
n
45
LEU
45
A
HIS
46
n
46
HIS
46
A
GLY
47
n
47
GLY
47
A
LEU
48
n
48
LEU
48
A
TRP
49
n
49
TRP
49
A
PRO
50
n
50
PRO
50
A
ASP
51
n
51
ASP
51
A
LYS
52
n
52
LYS
52
A
CYS
53
n
53
CYS
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
ALA
56
n
56
ALA
56
A
TYR
57
n
57
TYR
57
A
ALA
58
n
58
ALA
58
A
PRO
59
n
59
PRO
59
A
SER
60
n
60
SER
60
A
GLY
61
n
61
GLY
61
A
GLY
62
n
62
GLY
62
A
CYS
63
n
63
CYS
63
A
ASP
64
n
64
ASP
64
A
SER
65
n
65
SER
65
A
ASN
66
n
66
ASN
66
A
ARG
67
n
67
ARG
67
A
ALA
68
n
68
ALA
68
A
SER
69
n
69
SER
69
A
SER
70
n
70
SER
70
A
SER
71
n
71
SER
71
A
ILE
72
n
72
ILE
72
A
ALA
73
n
73
ALA
73
A
SER
74
n
74
SER
74
A
VAL
75
n
75
VAL
75
A
ILE
76
n
76
ILE
76
A
LYS
77
n
77
LYS
77
A
SER
78
n
78
SER
78
A
LYS
79
n
79
LYS
79
A
ASP
80
n
80
ASP
80
A
SER
81
n
81
SER
81
A
SER
82
n
82
SER
82
A
LEU
83
n
83
LEU
83
A
TYR
84
n
84
TYR
84
A
ASN
85
n
85
ASN
85
A
SER
86
n
86
SER
86
A
MET
87
n
87
MET
87
A
LEU
88
n
88
LEU
88
A
THR
89
n
89
THR
89
A
TYR
90
n
90
TYR
90
A
TRP
91
n
91
TRP
91
A
PRO
92
n
92
PRO
92
A
SER
93
n
93
SER
93
A
ASN
94
n
94
ASN
94
A
GLN
95
n
95
GLN
95
A
GLY
96
n
96
GLY
96
A
ASN
97
n
97
ASN
97
A
ASN
98
n
98
ASN
98
A
ASN
99
n
99
ASN
99
A
VAL
100
n
100
VAL
100
A
PHE
101
n
101
PHE
101
A
TRP
102
n
102
TRP
102
A
SER
103
n
103
SER
103
A
HIS
104
n
104
HIS
104
A
GLU
105
n
105
GLU
105
A
TRP
106
n
106
TRP
106
A
SER
107
n
107
SER
107
A
LYS
108
n
108
LYS
108
A
HIS
109
n
109
HIS
109
A
GLY
110
n
110
GLY
110
A
THR
111
n
111
THR
111
A
CYS
112
n
112
CYS
112
A
VAL
113
n
113
VAL
113
A
SER
114
n
114
SER
114
A
THR
115
n
115
THR
115
A
TYR
116
n
116
TYR
116
A
ASP
117
n
117
ASP
117
A
PRO
118
n
118
PRO
118
A
ASP
119
n
119
ASP
119
A
CYS
120
n
120
CYS
120
A
TYR
121
n
121
TYR
121
A
ASP
122
n
122
ASP
122
A
ASN
123
n
123
ASN
123
A
TYR
124
n
124
TYR
124
A
GLU
125
n
125
GLU
125
A
GLU
126
n
126
GLU
126
A
GLY
127
n
127
GLY
127
A
GLU
128
n
128
GLU
128
A
ASP
129
n
129
ASP
129
A
ILE
130
n
130
ILE
130
A
VAL
131
n
131
VAL
131
A
ASP
132
n
132
ASP
132
A
TYR
133
n
133
TYR
133
A
PHE
134
n
134
PHE
134
A
GLN
135
n
135
GLN
135
A
LYS
136
n
136
LYS
136
A
ALA
137
n
137
ALA
137
A
MET
138
n
138
MET
138
A
ASP
139
n
139
ASP
139
A
LEU
140
n
140
LEU
140
A
ARG
141
n
141
ARG
141
A
SER
142
n
142
SER
142
A
GLN
143
n
143
GLN
143
A
TYR
144
n
144
TYR
144
A
ASN
145
n
145
ASN
145
A
VAL
146
n
146
VAL
146
A
TYR
147
n
147
TYR
147
A
LYS
148
n
148
LYS
148
A
ALA
149
n
149
ALA
149
A
PHE
150
n
150
PHE
150
A
SER
151
n
151
SER
151
A
SER
152
n
152
SER
152
A
ASN
153
n
153
ASN
153
A
GLY
154
n
154
GLY
154
A
ILE
155
n
155
ILE
155
A
THR
156
n
156
THR
156
A
PRO
157
n
157
PRO
157
A
GLY
158
n
158
GLY
158
A
GLY
159
n
159
GLY
159
A
THR
160
n
160
THR
160
A
TYR
161
n
161
TYR
161
A
THR
162
n
162
THR
162
A
ALA
163
n
163
ALA
163
A
THR
164
n
164
THR
164
A
GLU
165
n
165
GLU
165
A
MET
166
n
166
MET
166
A
GLN
167
n
167
GLN
167
A
SER
168
n
168
SER
168
A
ALA
169
n
169
ALA
169
A
ILE
170
n
170
ILE
170
A
GLU
171
n
171
GLU
171
A
SER
172
n
172
SER
172
A
TYR
173
n
173
TYR
173
A
PHE
174
n
174
PHE
174
A
GLY
175
n
175
GLY
175
A
ALA
176
n
176
ALA
176
A
LYS
177
n
177
LYS
177
A
ALA
178
n
178
ALA
178
A
LYS
179
n
179
LYS
179
A
ILE
180
n
180
ILE
180
A
ASP
181
n
181
ASP
181
A
CYS
182
n
182
CYS
182
A
SER
183
n
183
SER
183
A
SER
184
n
184
SER
184
A
GLY
185
n
185
GLY
185
A
THR
186
n
186
THR
186
A
LEU
187
n
187
LEU
187
A
SER
188
n
188
SER
188
A
ASP
189
n
189
ASP
189
A
VAL
190
n
190
VAL
190
A
ALA
191
n
191
ALA
191
A
LEU
192
n
192
LEU
192
A
TYR
193
n
193
TYR
193
A
PHE
194
n
194
PHE
194
A
TYR
195
n
195
TYR
195
A
VAL
196
n
196
VAL
196
A
ARG
197
n
197
ARG
197
A
GLY
198
n
198
GLY
198
A
ARG
199
n
199
ARG
199
A
ASP
200
n
200
ASP
200
A
THR
201
n
201
THR
201
A
TYR
202
n
202
TYR
202
A
VAL
203
n
203
VAL
203
A
ILE
204
n
204
ILE
204
A
THR
205
n
205
THR
205
A
ASP
206
n
206
ASP
206
A
ALA
207
n
207
ALA
207
A
LEU
208
n
208
LEU
208
A
SER
209
n
209
SER
209
A
THR
210
n
210
THR
210
A
GLY
211
n
211
GLY
211
A
SER
212
n
212
SER
212
A
CYS
213
n
213
CYS
213
A
SER
214
n
214
SER
214
A
GLY
215
n
215
GLY
215
A
ASP
216
n
216
ASP
216
A
VAL
217
n
217
VAL
217
A
GLU
218
n
218
GLU
218
A
TYR
219
n
219
TYR
219
A
PRO
220
n
220
PRO
220
A
THR
221
n
221
THR
221
A
LYS
222
n
222
LYS
222
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
201
A
O
THR
201
A
N
ARG
197
A
N
ARG
197
A
O
VAL
190
A
O
VAL
190
A
N
MET
31
A
N
MET
31
A
O
LEU
26
A
O
LEU
26
A
N
ASP
51
A
N
ASP
51
A
O
GLY
159
A
O
GLY
159
A
N
TYR
219
A
N
TYR
219
A
O
LYS
179
A
O
LYS
179
A
N
ALA
191
A
N
ALA
191
1
-10.76
1.70
111.00
100.24
A
A
A
CB
CG
CD2
LEU
LEU
LEU
45
45
45
N
1
-5.05
0.80
107.30
102.25
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
49
49
49
N
1
4.78
0.50
120.30
125.08
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
67
67
67
N
1
-5.27
0.50
120.30
115.03
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
67
67
67
N
1
5.05
0.80
106.30
111.35
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
91
91
91
N
1
7.01
0.80
106.30
113.31
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
106
106
106
N
1
-6.54
1.00
110.10
103.56
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
106
106
106
N
1
-5.43
0.80
107.30
101.87
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
106
106
106
N
1
3.49
0.50
120.30
123.79
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
141
141
141
N
1
-6.81
0.50
120.30
113.49
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
141
141
141
N
1
15.26
2.20
113.40
128.66
A
A
A
CA
CB
CG
LYS
LYS
LYS
148
148
148
N
1
-3.70
0.60
121.00
117.30
A
A
A
CB
CG
CD2
TYR
TYR
TYR
219
219
219
N
1
A
A
NE2
CD2
HIS
HIS
46
46
-0.094
0.011
1.373
1.279
N
1
A
A
NE2
CD2
HIS
HIS
109
109
-0.069
0.011
1.373
1.304
N
1
A
SER
2
133.79
158.03
1
A
SER
4
-45.05
83.11
1
A
ASP
64
-164.45
103.33
1
A
ASP
80
-163.96
102.69
1
A
ASN
97
-168.25
88.19
1
A
ASN
123
-158.06
76.40
1
A
TYR
144
-103.66
70.58
1
A
ASP
200
-157.57
36.31
1
A
SER
209
-178.69
140.92
0.185
0.185
2.00
8.00
11745
78.2
1
2.0
MIR
2.00
8.00
0
1688
0
0
1688
0.016
3.3
26.7
1.0
2.0
8.0
1BOL
11745
2.0
0.0334
1
2.5
78.2
refinement
X-PLOR
PROTEIN (RIBONUCLEASE RH)
THE CRYSTAL STRUCTURE OF RIBONUCLEASE RH FROM RHIZOPUS NIVEUS AT 2.0 A RESOLUTION
1
N
N
A
ILE
72
A
ILE
72
HELX_P
A
LYS
79
A
LYS
79
1
1
8
A
SER
81
A
SER
81
HELX_P
A
TYR
90
A
TYR
90
1
2
10
A
ASN
98
A
ASN
98
HELX_P
A
LYS
108
A
LYS
108
1
3
11
A
GLY
110
A
GLY
110
HELX_P
A
CYS
112
A
CYS
112
5
4
3
A
SER
114
A
SER
114
HELX_P
A
TYR
116
A
TYR
116
5
5
3
A
PRO
118
A
PRO
118
HELX_P
A
CYS
120
A
CYS
120
5
6
3
A
GLU
128
A
GLU
128
HELX_P
A
GLN
143
A
GLN
143
1
7
16
A
VAL
146
A
VAL
146
HELX_P
A
ASN
153
A
ASN
153
1
8
8
A
ALA
163
A
ALA
163
HELX_P
A
PHE
174
A
PHE
174
1
9
12
disulf
2.029
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
20
A
SG
CYS
20
1_555
disulf
2.037
A
CYS
19
A
SG
CYS
19
1_555
A
CYS
120
A
SG
CYS
120
1_555
disulf
2.020
A
CYS
10
A
SG
CYS
10
1_555
A
CYS
53
A
SG
CYS
53
1_555
disulf
2.023
A
CYS
63
A
SG
CYS
63
1_555
A
CYS
112
A
SG
CYS
112
1_555
disulf
1.992
A
CYS
182
A
SG
CYS
182
1_555
A
CYS
213
A
SG
CYS
213
1_555
HYDROLASE
RIBONUCLEASES, HYDROLASE
RNRH_RHINI
UNP
1
P08056
17
238
1BOL
1
222
P08056
A
1
1
222
4
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
201
A
THR
201
A
THR
205
A
THR
205
A
ASP
189
A
ASP
189
A
ARG
197
A
ARG
197
A
LEU
26
A
LEU
26
A
GLN
32
A
GLN
32
A
THR
44
A
THR
44
A
ASP
51
A
ASP
51
A
GLY
159
A
GLY
159
A
THR
162
A
THR
162
A
ASP
216
A
ASP
216
A
TYR
219
A
TYR
219
A
LYS
179
A
LYS
179
A
SER
183
A
SER
183
A
THR
186
A
THR
186
A
ALA
191
A
ALA
191
ACTIVE SITE
Author
3
A
HIS
46
A
HIS
46
3
1_555
A
HIS
109
A
HIS
109
3
1_555
A
GLU
105
A
GLU
105
3
1_555
19
P 21 21 21