1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nagata, K. Hatanaka, H. Kohda, D. Inagaki, F. Structural Proteomics in Europe (SPINE) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H7 N O3 129.114 n PYROGLUTAMIC ACID L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 253 749 758 10.1006/jmbi.1995.0588 7473749 Three-dimensional solution structure of bombyxin-II an insulin-like peptide of the silkmoth Bombyx mori: structural comparison with insulin and relaxin. 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2188.589 BOMBYXIN-II,BOMBYXIN A-2 1 man polymer 3126.484 BOMBYXIN-II,BOMBYXIN A-6 1 man polymer no no GIVDECCLRPCSVDVLLSYC GIVDECCLRPCSVDVLLSYC A polypeptide(L) no yes (PCA)QPQAVHTYCGRHLARTLADLCWEAGVD QQPQAVHTYCGRHLARTLADLCWEAGVD B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n domestic silkworm Bombyx sample 7091 Bombyx mori domestic silkworm Bombyx sample 7091 Bombyx mori Structural Proteomics in Europe SPINE entity_poly pdbx_database_status pdbx_struct_assembly pdbx_struct_mod_residue pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Derived calculations Other Polymer sequence 1 0 1995-01-26 1 1 2008-03-24 1 2 2011-07-13 2 0 2019-12-25 _entity_poly.pdbx_seq_one_letter_code_can _pdbx_database_status.process_site _pdbx_struct_mod_residue.parent_comp_id _struct_conn.pdbx_leaving_atom_flag Y Y BNL 1994-07-21 REL 10 BRUNGER refinement X-PLOR GLY 1 n 1 GLY 1 A ILE 2 n 2 ILE 2 A VAL 3 n 3 VAL 3 A ASP 4 n 4 ASP 4 A GLU 5 n 5 GLU 5 A CYS 6 n 6 CYS 6 A CYS 7 n 7 CYS 7 A LEU 8 n 8 LEU 8 A ARG 9 n 9 ARG 9 A PRO 10 n 10 PRO 10 A CYS 11 n 11 CYS 11 A SER 12 n 12 SER 12 A VAL 13 n 13 VAL 13 A ASP 14 n 14 ASP 14 A VAL 15 n 15 VAL 15 A LEU 16 n 16 LEU 16 A LEU 17 n 17 LEU 17 A SER 18 n 18 SER 18 A TYR 19 n 19 TYR 19 A CYS 20 n 20 CYS 20 A PCA -2 n 1 PCA -2 B GLN -1 n 2 GLN -1 B PRO 0 n 3 PRO 0 B GLN 1 n 4 GLN 1 B ALA 2 n 5 ALA 2 B VAL 3 n 6 VAL 3 B HIS 4 n 7 HIS 4 B THR 5 n 8 THR 5 B TYR 6 n 9 TYR 6 B CYS 7 n 10 CYS 7 B GLY 8 n 11 GLY 8 B ARG 9 n 12 ARG 9 B HIS 10 n 13 HIS 10 B LEU 11 n 14 LEU 11 B ALA 12 n 15 ALA 12 B ARG 13 n 16 ARG 13 B THR 14 n 17 THR 14 B LEU 15 n 18 LEU 15 B ALA 16 n 19 ALA 16 B ASP 17 n 20 ASP 17 B LEU 18 n 21 LEU 18 B CYS 19 n 22 CYS 19 B TRP 20 n 23 TRP 20 B GLU 21 n 24 GLU 21 B ALA 22 n 25 ALA 22 B GLY 23 n 26 GLY 23 B VAL 24 n 27 VAL 24 B ASP 25 n 28 ASP 25 B author_defined_assembly 2 dimeric B PCA -2 PYROGLUTAMIC ACID B PCA 1 GLN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A H H CYS SER 11 12 1.26 2 B B O H GLY HIS 8 10 1.59 3 A A H H CYS SER 11 12 1.24 5 A A H H CYS SER 11 12 1.30 7 A A H H CYS SER 11 12 1.25 10 A A H H CYS SER 11 12 1.31 1 A ARG 9 0.181 SIDE CHAIN 1 B ARG 9 0.231 SIDE CHAIN 1 B ARG 13 0.284 SIDE CHAIN 2 B ARG 9 0.275 SIDE CHAIN 3 A ARG 9 0.186 SIDE CHAIN 3 B ARG 9 0.185 SIDE CHAIN 3 B ARG 13 0.267 SIDE CHAIN 4 A ARG 9 0.217 SIDE CHAIN 4 B ARG 9 0.284 SIDE CHAIN 4 B ARG 13 0.309 SIDE CHAIN 5 A ARG 9 0.260 SIDE CHAIN 5 B ARG 9 0.279 SIDE CHAIN 5 B ARG 13 0.086 SIDE CHAIN 6 A ARG 9 0.276 SIDE CHAIN 6 B TYR 6 0.061 SIDE CHAIN 6 B ARG 9 0.278 SIDE CHAIN 6 B ARG 13 0.268 SIDE CHAIN 7 A ARG 9 0.093 SIDE CHAIN 7 B ARG 9 0.281 SIDE CHAIN 7 B ARG 13 0.225 SIDE CHAIN 8 A ARG 9 0.293 SIDE CHAIN 8 B ARG 9 0.149 SIDE CHAIN 8 B ARG 13 0.227 SIDE CHAIN 9 A ARG 9 0.296 SIDE CHAIN 9 B ARG 9 0.315 SIDE CHAIN 9 B ARG 13 0.317 SIDE CHAIN 10 A ARG 9 0.231 SIDE CHAIN 10 B ARG 9 0.263 SIDE CHAIN 10 B ARG 13 0.250 SIDE CHAIN 1 -6.54 1.00 110.10 103.56 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 1 6.27 0.90 109.00 115.27 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 1 7.94 1.10 130.40 138.34 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 1 -6.01 1.00 107.30 101.29 B B B NE1 CE2 CD2 TRP TRP TRP 20 20 20 N 2 -6.80 1.00 110.10 103.30 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 2 5.98 0.90 109.00 114.98 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 2 9.25 1.10 130.40 139.65 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 2 -6.63 1.00 107.30 100.67 B B B NE1 CE2 CD2 TRP TRP TRP 20 20 20 N 3 -6.51 1.00 110.10 103.59 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 3 6.18 0.90 109.00 115.18 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 3 7.96 1.10 130.40 138.36 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 4 -6.45 1.00 110.10 103.65 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 4 6.19 0.90 109.00 115.19 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 4 8.47 1.10 130.40 138.87 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 4 -6.25 1.00 107.30 101.05 B B B NE1 CE2 CD2 TRP TRP TRP 20 20 20 N 5 -6.43 1.00 110.10 103.67 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 5 6.25 0.90 109.00 115.25 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 5 7.95 1.10 130.40 138.35 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 5 -6.05 1.00 107.30 101.25 B B B NE1 CE2 CD2 TRP TRP TRP 20 20 20 N 6 -10.44 1.70 113.60 103.16 B B B CA CB CG HIS HIS HIS 4 4 4 N 6 -6.38 1.00 110.10 103.72 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 6 6.17 0.90 109.00 115.17 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 6 7.86 1.10 130.40 138.26 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 6 -6.01 1.00 107.30 101.29 B B B NE1 CE2 CD2 TRP TRP TRP 20 20 20 N 7 -6.40 1.00 110.10 103.70 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 7 6.14 0.90 109.00 115.14 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 7 8.14 1.10 130.40 138.54 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 7 -6.12 1.00 107.30 101.18 B B B NE1 CE2 CD2 TRP TRP TRP 20 20 20 N 8 -6.42 1.00 110.10 103.68 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 8 6.04 0.90 109.00 115.04 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 8 8.51 1.10 130.40 138.91 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 8 -6.23 1.00 107.30 101.07 B B B NE1 CE2 CD2 TRP TRP TRP 20 20 20 N 9 -6.33 1.00 110.10 103.77 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 9 6.04 0.90 109.00 115.04 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 9 7.89 1.10 130.40 138.29 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 10 -6.58 1.00 110.10 103.52 B B B CG CD1 NE1 TRP TRP TRP 20 20 20 N 10 6.02 0.90 109.00 115.02 B B B CD1 NE1 CE2 TRP TRP TRP 20 20 20 N 10 8.80 1.10 130.40 139.20 B B B NE1 CE2 CZ2 TRP TRP TRP 20 20 20 N 10 -6.32 1.00 107.30 100.98 B B B NE1 CE2 CD2 TRP TRP TRP 20 20 20 N 1 B B CG ND1 HIS HIS 4 4 -0.102 0.015 1.369 1.267 N 1 B B CG ND1 HIS HIS 10 10 -0.099 0.015 1.369 1.270 N 2 B B CG ND1 HIS HIS 4 4 -0.104 0.015 1.369 1.265 N 2 B B CG ND1 HIS HIS 10 10 -0.105 0.015 1.369 1.264 N 2 B B CG CD2 TRP TRP 20 20 -0.108 0.017 1.432 1.324 N 3 B B CG ND1 HIS HIS 4 4 -0.103 0.015 1.369 1.266 N 3 B B CG ND1 HIS HIS 10 10 -0.100 0.015 1.369 1.269 N 4 B B CG ND1 HIS HIS 4 4 -0.100 0.015 1.369 1.269 N 4 B B CG ND1 HIS HIS 10 10 -0.101 0.015 1.369 1.268 N 5 B B CG ND1 HIS HIS 4 4 -0.104 0.015 1.369 1.265 N 5 B B CG ND1 HIS HIS 10 10 -0.101 0.015 1.369 1.268 N 6 B B CG ND1 HIS HIS 4 4 -0.102 0.015 1.369 1.267 N 6 B B CG ND1 HIS HIS 10 10 -0.097 0.015 1.369 1.272 N 7 B B CG ND1 HIS HIS 4 4 -0.101 0.015 1.369 1.268 N 7 B B CG ND1 HIS HIS 10 10 -0.100 0.015 1.369 1.269 N 8 B B CG ND1 HIS HIS 4 4 -0.101 0.015 1.369 1.268 N 8 B B CG ND1 HIS HIS 10 10 -0.108 0.015 1.369 1.261 N 9 B B CG ND1 HIS HIS 4 4 -0.103 0.015 1.369 1.266 N 9 B B CG ND1 HIS HIS 10 10 -0.102 0.015 1.369 1.267 N 10 B B CG ND1 HIS HIS 4 4 -0.103 0.015 1.369 1.266 N 10 B B CG ND1 HIS HIS 10 10 -0.100 0.015 1.369 1.269 N 1 A PRO 10 -43.26 174.18 1 A CYS 11 -179.40 18.84 1 A SER 12 -35.43 137.31 1 A VAL 13 -13.28 -51.76 1 A ASP 14 -62.87 13.99 1 A VAL 15 -131.85 -31.36 1 B GLN -1 -149.72 59.54 1 B PRO 0 -85.98 -151.05 1 B GLN 1 -154.02 39.97 1 B ALA 2 -85.94 -102.42 1 B HIS 4 -70.39 35.23 1 B THR 5 -44.99 153.73 1 B TYR 6 -92.97 -153.39 1 B CYS 7 -171.47 108.24 1 B ARG 9 62.48 -67.86 1 B HIS 10 -55.04 -9.68 1 B VAL 24 -45.37 -15.40 2 A PRO 10 -36.54 167.83 2 A CYS 11 -164.53 13.14 2 A SER 12 -34.39 129.72 2 A VAL 13 -11.63 -52.64 2 A ASP 14 -56.19 0.48 2 B PRO 0 -84.33 -152.26 2 B ALA 2 168.39 111.11 2 B HIS 4 -36.02 86.76 2 B TYR 6 -101.08 -154.35 2 B CYS 7 -174.80 117.10 2 B ARG 9 62.02 -55.66 2 B HIS 10 -55.01 -3.95 2 B VAL 24 -39.91 -20.28 3 A ASP 4 -78.54 25.02 3 A GLU 5 -136.29 -34.91 3 A PRO 10 -44.01 -179.74 3 A CYS 11 176.84 21.94 3 A SER 12 -32.51 136.37 3 A VAL 13 -9.61 -52.90 3 A ASP 14 -61.25 13.08 3 B PRO 0 -71.02 -153.22 3 B GLN 1 -74.80 -73.48 3 B ALA 2 175.51 94.22 3 B HIS 4 -66.25 75.02 3 B ARG 9 57.81 -76.76 3 B HIS 10 -47.53 -18.30 4 A PRO 10 -37.58 164.84 4 A CYS 11 -159.14 22.50 4 A SER 12 -31.19 131.69 4 A VAL 13 -3.71 -53.78 4 B GLN -1 48.38 75.10 4 B PRO 0 -77.42 -148.03 4 B ALA 2 -0.51 -74.49 4 B VAL 3 -140.78 -1.63 4 B HIS 4 -64.60 26.96 4 B THR 5 -45.95 154.27 4 B ARG 9 56.07 -72.50 4 B VAL 24 -46.66 -12.61 5 A ILE 2 -47.20 -70.13 5 A GLU 5 -138.83 -31.24 5 A PRO 10 -39.18 168.98 5 A CYS 11 -176.65 16.91 5 A SER 12 -30.04 127.15 5 A VAL 13 -6.80 -54.77 5 B GLN -1 51.53 84.98 5 B PRO 0 -81.08 -156.04 5 B ALA 2 -177.97 94.25 5 B HIS 4 -52.22 79.80 5 B CYS 7 -160.37 90.15 5 B ARG 9 56.78 -69.71 5 B HIS 10 -46.21 -17.31 6 A ASP 4 -75.94 23.31 6 A PRO 10 -36.55 167.78 6 A CYS 11 -155.33 13.60 6 A SER 12 -35.97 131.57 6 A VAL 13 -11.29 -52.74 6 A ASP 14 -61.47 10.14 6 B GLN -1 -5.19 80.55 6 B PRO 0 -65.50 69.88 6 B GLN 1 67.77 -65.57 6 B ALA 2 -128.28 -125.93 6 B HIS 4 -99.49 30.65 6 B THR 5 5.93 127.75 6 B ARG 9 61.39 -69.09 6 B HIS 10 -44.80 -16.18 6 B ARG 13 -92.89 -60.45 6 B VAL 24 -44.61 -17.41 7 A ASP 4 -78.84 27.72 7 A GLU 5 -141.39 -25.75 7 A PRO 10 -41.26 173.37 7 A CYS 11 -178.54 20.23 7 A SER 12 -34.40 142.42 7 A VAL 13 -13.24 -51.80 7 A ASP 14 -61.90 10.98 7 B ALA 2 79.36 106.84 7 B HIS 4 -62.90 -132.18 7 B THR 5 167.12 58.80 7 B TYR 6 -163.71 -111.40 7 B CYS 7 71.93 96.85 7 B ARG 9 67.34 -58.14 7 B HIS 10 -62.98 9.07 7 B VAL 24 -48.11 -5.04 8 A PRO 10 -33.08 159.42 8 A CYS 11 -178.80 23.00 8 A SER 12 -43.30 153.03 8 A VAL 13 -19.51 -50.18 8 A ASP 14 -61.95 10.62 8 B PRO 0 -69.97 -154.20 8 B ALA 2 -91.02 -120.83 8 B VAL 3 -153.13 -35.58 8 B HIS 4 -100.75 -101.57 8 B THR 5 52.92 139.71 8 B CYS 7 58.80 146.42 8 B ARG 9 89.20 -60.95 8 B VAL 24 -39.85 -23.35 9 A PRO 10 -39.61 171.61 9 A CYS 11 -166.61 20.62 9 A SER 12 -35.62 135.66 9 A VAL 13 -13.49 -51.48 9 A ASP 14 -56.99 1.17 9 B GLN -1 39.87 66.96 9 B PRO 0 -85.03 -153.52 9 B ALA 2 65.88 97.97 9 B HIS 4 -26.97 84.63 9 B ARG 9 91.34 -64.35 9 B VAL 24 -40.40 -19.10 10 A ASP 4 -77.41 24.88 10 A PRO 10 -37.98 160.86 10 A CYS 11 -178.24 16.76 10 A VAL 13 -20.00 -49.54 10 A ASP 14 -62.53 14.04 10 B GLN -1 -32.94 98.41 10 B PRO 0 -75.45 -147.33 10 B ALA 2 54.00 103.18 10 B VAL 3 -153.92 -3.94 10 B HIS 4 -28.34 84.41 10 B TYR 6 -103.25 -162.67 10 B ARG 9 63.31 -69.88 10 B HIS 10 -54.40 -9.98 model building X-PLOR refinement X-PLOR phasing X-PLOR BOMBYXIN-II (NMR, 10 STRUCTURES) THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN 1 N N 2 N N A ILE 2 A ILE 2 HELX_P A LEU 8 A LEU 8 1 H1 7 A VAL 13 A VAL 13 HELX_P A TYR 19 A TYR 19 1 H2 7 B ARG 9 B ARG 12 HELX_P B ALA 22 B ALA 25 1 H3 14 disulf 2.018 A CYS 6 A SG CYS 6 1_555 A CYS 11 A SG CYS 11 1_555 disulf 2.023 A CYS 7 A SG CYS 7 1_555 B CYS 7 B SG CYS 10 1_555 disulf 2.024 A CYS 20 A SG CYS 20 1_555 B CYS 19 B SG CYS 22 1_555 covale 1.306 both B PCA -2 B C PCA 1 1_555 B GLN -1 B N GLN 2 1_555 HORMONE HORMONE, Structural Proteomics in Europe, SPINE, Structural Genomics BXA2_BOMMO UNP 1 70 P15411 BXA6_BOMMO UNP 2 20 P26729 70 89 1BON 1 20 P15411 A 1 1 20 20 47 1BON -1 25 P26729 B 2 2 28 1 P 1