0.020492
0.000000
0.007136
0.000000
0.008897
0.000000
0.000000
0.000000
0.017857
0.00000
0.00000
0.00000
Gong, W.
O'Gara, M.
Blumenthal, R.M.
Cheng, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
109.20
90.00
48.800
112.400
59.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C14 H20 N6 O5 S
384.411
n
S-ADENOSYL-L-HOMOCYSTEINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
25
2702
2715
10.1093/nar/25.14.2702
9207015
Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment.
1997
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
247
1009
Expression, Purification, Mass Spectrometry, Crystallization and Multiwavelength Anomalous Diffraction of Selenomethionyl PvuII DNA Methyltransferase (Cytosine-N4-Specific)
1997
10.2210/pdb1boo/pdb
pdb_00001boo
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
289
1
MIRRORS
IMAGE PLATE
MARRESEARCH
MAD
M
x-ray
1
0.98233
1.0
0.98211
1.0
0.92
1.0
1.072
1.0
X12C
NSLS
0.98233,0.98211,0.92,1.072
SYNCHROTRON
NSLS BEAMLINE X12C
36956.207
PROTEIN (N-4 CYTOSINE-SPECIFIC METHYLTRANSFERASE PVU II)
2.1.1.113
STARTING FROM THE INTERNAL TRANSLATION INITIATOR AT MET14
N TERMIANL DELETION (RESIDUES 1-13)
1
man
polymer
384.411
S-ADENOSYL-L-HOMOCYSTEINE
1
syn
non-polymer
EC 2.1.1.113
no
no
MLNFGKKPAYTTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSF
VVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAEDFYWFNPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDI
TKVLAPYSDRMKKLIEDPDKFYTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAK
LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRILNGESLDLN
SII
MLNFGKKPAYTTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSF
VVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAEDFYWFNPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDI
TKVLAPYSDRMKKLIEDPDKFYTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAK
LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRILNGESLDLN
SII
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Proteus
Escherichia
Escherichia coli
sample
585
Proteus vulgaris
316385
Escherichia coli str. K-12 substr. DH10B
DH10B
2
4.15
38.2
7.2
0.1 M HEPES PH 7.2, 0.2 M SODIUM ACETATE 20% POLYETHYLENE GLYCOL 400
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1998-08-12
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
RCSB
1998-07-31
REL
SAH
S-ADENOSYL-L-HOMOCYSTEINE
SAH
401
2
SAH
SAH
401
A
n
1
14
A
n
2
15
A
ASN
16
n
3
ASN
16
A
PHE
17
n
4
PHE
17
A
GLY
18
n
5
GLY
18
A
LYS
19
n
6
LYS
19
A
LYS
20
n
7
LYS
20
A
PRO
21
n
8
PRO
21
A
ALA
22
n
9
ALA
22
A
TYR
23
n
10
TYR
23
A
THR
24
n
11
THR
24
A
THR
25
n
12
THR
25
A
SER
26
n
13
SER
26
A
ASN
27
n
14
ASN
27
A
GLY
28
n
15
GLY
28
A
SER
29
n
16
SER
29
A
MET
30
n
17
MET
30
A
TYR
31
n
18
TYR
31
A
ILE
32
n
19
ILE
32
A
GLY
33
n
20
GLY
33
A
ASP
34
n
21
ASP
34
A
SER
35
n
22
SER
35
A
LEU
36
n
23
LEU
36
A
GLU
37
n
24
GLU
37
A
LEU
38
n
25
LEU
38
A
LEU
39
n
26
LEU
39
A
GLU
40
n
27
GLU
40
A
SER
41
n
28
SER
41
A
PHE
42
n
29
PHE
42
A
PRO
43
n
30
PRO
43
A
GLU
44
n
31
GLU
44
A
GLU
45
n
32
GLU
45
A
SER
46
n
33
SER
46
A
ILE
47
n
34
ILE
47
A
SER
48
n
35
SER
48
A
LEU
49
n
36
LEU
49
A
VAL
50
n
37
VAL
50
A
MET
51
n
38
MET
51
A
THR
52
n
39
THR
52
A
SER
53
n
40
SER
53
A
PRO
54
n
41
PRO
54
A
PRO
55
n
42
PRO
55
A
PHE
56
n
43
PHE
56
A
ALA
57
n
44
ALA
57
A
LEU
58
n
45
LEU
58
A
ALA
59
n
46
GLN
59
A
ALA
60
n
47
ARG
60
A
ALA
61
n
48
LYS
61
A
ALA
62
n
49
LYS
62
A
ALA
63
n
50
GLU
63
A
ALA
64
n
51
TYR
64
A
GLY
65
n
52
GLY
65
A
ALA
66
n
53
ASN
66
A
LEU
67
n
54
LEU
67
A
ALA
68
n
55
GLU
68
A
GLN
69
n
56
GLN
69
A
HIS
70
n
57
HIS
70
A
ALA
71
n
58
GLU
71
A
TYR
72
n
59
TYR
72
A
VAL
73
n
60
VAL
73
A
ASP
74
n
61
ASP
74
A
TRP
75
n
62
TRP
75
A
PHE
76
n
63
PHE
76
A
LEU
77
n
64
LEU
77
A
SER
78
n
65
SER
78
A
PHE
79
n
66
PHE
79
A
ALA
80
n
67
ALA
80
A
LYS
81
n
68
LYS
81
A
VAL
82
n
69
VAL
82
A
VAL
83
n
70
VAL
83
A
ASN
84
n
71
ASN
84
A
LYS
85
n
72
LYS
85
A
LYS
86
n
73
LYS
86
A
LEU
87
n
74
LEU
87
A
LYS
88
n
75
LYS
88
A
PRO
89
n
76
PRO
89
A
ASP
90
n
77
ASP
90
A
GLY
91
n
78
GLY
91
A
SER
92
n
79
SER
92
A
PHE
93
n
80
PHE
93
A
VAL
94
n
81
VAL
94
A
VAL
95
n
82
VAL
95
A
ASP
96
n
83
ASP
96
A
PHE
97
n
84
PHE
97
A
GLY
98
n
85
GLY
98
A
GLY
99
n
86
GLY
99
A
ALA
100
n
87
ALA
100
A
TYR
101
n
88
TYR
101
A
MET
102
n
89
MET
102
A
LYS
103
n
90
LYS
103
A
GLY
104
n
91
GLY
104
A
VAL
105
n
92
VAL
105
A
PRO
106
n
93
PRO
106
A
ALA
107
n
94
ALA
107
A
ARG
108
n
95
ARG
108
A
SER
109
n
96
SER
109
A
ILE
110
n
97
ILE
110
A
TYR
111
n
98
TYR
111
A
ASN
112
n
99
ASN
112
A
PHE
113
n
100
PHE
113
A
ARG
114
n
101
ARG
114
A
VAL
115
n
102
VAL
115
A
LEU
116
n
103
LEU
116
A
ILE
117
n
104
ILE
117
A
ARG
118
n
105
ARG
118
A
MET
119
n
106
MET
119
A
ILE
120
n
107
ILE
120
A
ASP
121
n
108
ASP
121
A
GLU
122
n
109
GLU
122
A
VAL
123
n
110
VAL
123
A
GLY
124
n
111
GLY
124
A
PHE
125
n
112
PHE
125
A
PHE
126
n
113
PHE
126
A
LEU
127
n
114
LEU
127
A
ALA
128
n
115
ALA
128
A
GLU
129
n
116
GLU
129
A
ASP
130
n
117
ASP
130
A
PHE
131
n
118
PHE
131
A
TYR
132
n
119
TYR
132
A
TRP
133
n
120
TRP
133
A
PHE
134
n
121
PHE
134
A
ASN
135
n
122
ASN
135
A
PRO
136
n
123
PRO
136
A
SER
137
n
124
SER
137
A
LYS
138
n
125
LYS
138
A
ALA
139
n
126
LEU
139
A
PRO
140
n
127
PRO
140
A
SER
141
n
128
SER
141
A
PRO
142
n
129
PRO
142
A
ILE
143
n
130
ILE
143
A
GLU
144
n
131
GLU
144
A
TRP
145
n
132
TRP
145
A
VAL
146
n
133
VAL
146
A
ASN
147
n
134
ASN
147
A
LYS
148
n
135
LYS
148
A
ARG
149
n
136
ARG
149
A
LYS
150
n
137
LYS
150
A
ILE
151
n
138
ILE
151
A
ARG
152
n
139
ARG
152
A
VAL
153
n
140
VAL
153
A
LYS
154
n
141
LYS
154
A
ASP
155
n
142
ASP
155
A
ALA
156
n
143
ALA
156
A
VAL
157
n
144
VAL
157
A
ASN
158
n
145
ASN
158
A
THR
159
n
146
THR
159
A
VAL
160
n
147
VAL
160
A
TRP
161
n
148
TRP
161
A
TRP
162
n
149
TRP
162
A
PHE
163
n
150
PHE
163
A
SER
164
n
151
SER
164
A
LYS
165
n
152
LYS
165
A
THR
166
n
153
THR
166
A
GLU
167
n
154
GLU
167
A
TRP
168
n
155
TRP
168
A
PRO
169
n
156
PRO
169
A
LYS
170
n
157
LYS
170
A
SER
171
n
158
SER
171
A
ASP
172
n
159
ASP
172
A
ILE
173
n
160
ILE
173
A
THR
174
n
161
THR
174
A
LYS
175
n
162
LYS
175
A
VAL
176
n
163
VAL
176
A
LEU
177
n
164
LEU
177
A
ALA
178
n
165
ALA
178
A
n
166
179
A
n
167
180
A
n
168
181
A
n
169
182
A
n
170
183
A
n
171
184
A
n
172
185
A
n
173
186
A
n
174
187
A
n
175
188
A
n
176
189
A
n
177
190
A
n
178
191
A
n
179
192
A
n
180
193
A
n
181
194
A
n
182
195
A
n
183
196
A
n
184
197
A
n
185
198
A
n
186
199
A
n
187
200
A
n
188
201
A
n
189
202
A
n
190
203
A
n
191
204
A
n
192
205
A
n
193
206
A
n
194
207
A
n
195
208
A
n
196
209
A
n
197
210
A
n
198
211
A
n
199
212
A
n
200
213
A
n
201
214
A
n
202
215
A
n
203
216
A
SER
217
n
204
SER
217
A
ILE
218
n
205
ILE
218
A
PRO
219
n
206
PRO
219
A
PRO
220
n
207
PRO
220
A
ASN
221
n
208
ASN
221
A
LEU
222
n
209
LEU
222
A
LEU
223
n
210
LEU
223
A
GLN
224
n
211
GLN
224
A
ILE
225
n
212
ILE
225
A
SER
226
n
213
SER
226
A
ASN
227
n
214
ASN
227
A
SER
228
n
215
SER
228
A
GLU
229
n
216
GLU
229
A
SER
230
n
217
SER
230
A
ASN
231
n
218
ASN
231
A
GLY
232
n
219
GLY
232
A
ALA
233
n
220
GLN
233
A
TYR
234
n
221
TYR
234
A
LEU
235
n
222
LEU
235
A
ALA
236
n
223
ALA
236
A
ASN
237
n
224
ASN
237
A
CYS
238
n
225
CYS
238
A
ALA
239
n
226
LYS
239
A
LEU
240
n
227
LEU
240
A
MET
241
n
228
MET
241
A
GLY
242
n
229
GLY
242
A
ILE
243
n
230
ILE
243
A
ALA
244
n
231
LYS
244
A
ALA
245
n
232
ALA
245
A
HIS
246
n
233
HIS
246
A
PRO
247
n
234
PRO
247
A
ALA
248
n
235
ALA
248
A
ARG
249
n
236
ARG
249
A
PHE
250
n
237
PHE
250
A
PRO
251
n
238
PRO
251
A
ALA
252
n
239
ALA
252
A
LYS
253
n
240
LYS
253
A
LEU
254
n
241
LEU
254
A
PRO
255
n
242
PRO
255
A
GLU
256
n
243
GLU
256
A
PHE
257
n
244
PHE
257
A
PHE
258
n
245
PHE
258
A
ILE
259
n
246
ILE
259
A
ARG
260
n
247
ARG
260
A
MET
261
n
248
MET
261
A
LEU
262
n
249
LEU
262
A
THR
263
n
250
THR
263
A
GLU
264
n
251
GLU
264
A
PRO
265
n
252
PRO
265
A
ASP
266
n
253
ASP
266
A
ASP
267
n
254
ASP
267
A
LEU
268
n
255
LEU
268
A
VAL
269
n
256
VAL
269
A
VAL
270
n
257
VAL
270
A
ASP
271
n
258
ASP
271
A
ILE
272
n
259
ILE
272
A
PHE
273
n
260
PHE
273
A
GLY
274
n
261
GLY
274
A
GLY
275
n
262
GLY
275
A
SER
276
n
263
SER
276
A
ASN
277
n
264
ASN
277
A
THR
278
n
265
THR
278
A
THR
279
n
266
THR
279
A
GLY
280
n
267
GLY
280
A
LEU
281
n
268
LEU
281
A
VAL
282
n
269
VAL
282
A
ALA
283
n
270
ALA
283
A
GLU
284
n
271
GLU
284
A
ARG
285
n
272
ARG
285
A
GLU
286
n
273
GLU
286
A
SER
287
n
274
SER
287
A
ARG
288
n
275
ARG
288
A
LYS
289
n
276
LYS
289
A
TRP
290
n
277
TRP
290
A
ILE
291
n
278
ILE
291
A
SER
292
n
279
SER
292
A
PHE
293
n
280
PHE
293
A
GLU
294
n
281
GLU
294
A
MET
295
n
282
MET
295
A
LYS
296
n
283
LYS
296
A
PRO
297
n
284
PRO
297
A
GLU
298
n
285
GLU
298
A
TYR
299
n
286
TYR
299
A
VAL
300
n
287
VAL
300
A
ALA
301
n
288
ALA
301
A
ALA
302
n
289
ALA
302
A
SER
303
n
290
SER
303
A
ALA
304
n
291
ALA
304
A
PHE
305
n
292
PHE
305
A
ARG
306
n
293
ARG
306
A
PHE
307
n
294
PHE
307
A
LEU
308
n
295
LEU
308
A
ALA
309
n
296
ASP
309
A
ALA
310
n
297
ASN
310
A
ASN
311
n
298
ASN
311
A
ILE
312
n
299
ILE
312
A
SER
313
n
300
SER
313
A
GLU
314
n
301
GLU
314
A
GLU
315
n
302
GLU
315
A
LYS
316
n
303
LYS
316
A
ILE
317
n
304
ILE
317
A
THR
318
n
305
THR
318
A
ASP
319
n
306
ASP
319
A
ILE
320
n
307
ILE
320
A
TYR
321
n
308
TYR
321
A
ASN
322
n
309
ASN
322
A
ARG
323
n
310
ARG
323
A
ILE
324
n
311
ILE
324
A
LEU
325
n
312
LEU
325
A
ASN
326
n
313
ASN
326
A
GLY
327
n
314
GLY
327
A
GLU
328
n
315
GLU
328
A
SER
329
n
316
SER
329
A
LEU
330
n
317
LEU
330
A
ASP
331
n
318
ASP
331
A
LEU
332
n
319
LEU
332
A
ASN
333
n
320
ASN
333
A
SER
334
n
321
SER
334
A
ILE
335
n
322
ILE
335
A
n
323
336
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
GLN
59
A
CG
GLN
46
1
Y
1
A
CD
GLN
59
A
CD
GLN
46
1
Y
1
A
OE1
GLN
59
A
OE1
GLN
46
1
Y
1
A
NE2
GLN
59
A
NE2
GLN
46
1
Y
1
A
CG
ARG
60
A
CG
ARG
47
1
Y
1
A
CD
ARG
60
A
CD
ARG
47
1
Y
1
A
NE
ARG
60
A
NE
ARG
47
1
Y
1
A
CZ
ARG
60
A
CZ
ARG
47
1
Y
1
A
NH1
ARG
60
A
NH1
ARG
47
1
Y
1
A
NH2
ARG
60
A
NH2
ARG
47
1
Y
1
A
CG
LYS
61
A
CG
LYS
48
1
Y
1
A
CD
LYS
61
A
CD
LYS
48
1
Y
1
A
CE
LYS
61
A
CE
LYS
48
1
Y
1
A
NZ
LYS
61
A
NZ
LYS
48
1
Y
1
A
CG
LYS
62
A
CG
LYS
49
1
Y
1
A
CD
LYS
62
A
CD
LYS
49
1
Y
1
A
CE
LYS
62
A
CE
LYS
49
1
Y
1
A
NZ
LYS
62
A
NZ
LYS
49
1
Y
1
A
CG
GLU
63
A
CG
GLU
50
1
Y
1
A
CD
GLU
63
A
CD
GLU
50
1
Y
1
A
OE1
GLU
63
A
OE1
GLU
50
1
Y
1
A
OE2
GLU
63
A
OE2
GLU
50
1
Y
1
A
CG
TYR
64
A
CG
TYR
51
1
Y
1
A
CD1
TYR
64
A
CD1
TYR
51
1
Y
1
A
CD2
TYR
64
A
CD2
TYR
51
1
Y
1
A
CE1
TYR
64
A
CE1
TYR
51
1
Y
1
A
CE2
TYR
64
A
CE2
TYR
51
1
Y
1
A
CZ
TYR
64
A
CZ
TYR
51
1
Y
1
A
OH
TYR
64
A
OH
TYR
51
1
Y
1
A
CG
ASN
66
A
CG
ASN
53
1
Y
1
A
OD1
ASN
66
A
OD1
ASN
53
1
Y
1
A
ND2
ASN
66
A
ND2
ASN
53
1
Y
1
A
CG
GLU
68
A
CG
GLU
55
1
Y
1
A
CD
GLU
68
A
CD
GLU
55
1
Y
1
A
OE1
GLU
68
A
OE1
GLU
55
1
Y
1
A
OE2
GLU
68
A
OE2
GLU
55
1
Y
1
A
CG
GLU
71
A
CG
GLU
58
1
Y
1
A
CD
GLU
71
A
CD
GLU
58
1
Y
1
A
OE1
GLU
71
A
OE1
GLU
58
1
Y
1
A
OE2
GLU
71
A
OE2
GLU
58
1
Y
1
A
CG
LEU
139
A
CG
LEU
126
1
Y
1
A
CD1
LEU
139
A
CD1
LEU
126
1
Y
1
A
CD2
LEU
139
A
CD2
LEU
126
1
Y
1
A
CG
GLN
233
A
CG
GLN
220
1
Y
1
A
CD
GLN
233
A
CD
GLN
220
1
Y
1
A
OE1
GLN
233
A
OE1
GLN
220
1
Y
1
A
NE2
GLN
233
A
NE2
GLN
220
1
Y
1
A
CG
LYS
239
A
CG
LYS
226
1
Y
1
A
CD
LYS
239
A
CD
LYS
226
1
Y
1
A
CE
LYS
239
A
CE
LYS
226
1
Y
1
A
NZ
LYS
239
A
NZ
LYS
226
1
Y
1
A
CG
LYS
244
A
CG
LYS
231
1
Y
1
A
CD
LYS
244
A
CD
LYS
231
1
Y
1
A
CE
LYS
244
A
CE
LYS
231
1
Y
1
A
NZ
LYS
244
A
NZ
LYS
231
1
Y
1
A
CG
ASP
309
A
CG
ASP
296
1
Y
1
A
OD1
ASP
309
A
OD1
ASP
296
1
Y
1
A
OD2
ASP
309
A
OD2
ASP
296
1
Y
1
A
CG
ASN
310
A
CG
ASN
297
1
Y
1
A
OD1
ASN
310
A
OD1
ASN
297
1
Y
1
A
ND2
ASN
310
A
ND2
ASN
297
1
Y
1
A
MET
14
A
MET
1
1
Y
1
A
LEU
15
A
LEU
2
1
Y
1
A
PRO
179
A
PRO
166
1
Y
1
A
TYR
180
A
TYR
167
1
Y
1
A
SER
181
A
SER
168
1
Y
1
A
ASP
182
A
ASP
169
1
Y
1
A
ARG
183
A
ARG
170
1
Y
1
A
MET
184
A
MET
171
1
Y
1
A
LYS
185
A
LYS
172
1
Y
1
A
LYS
186
A
LYS
173
1
Y
1
A
LEU
187
A
LEU
174
1
Y
1
A
ILE
188
A
ILE
175
1
Y
1
A
GLU
189
A
GLU
176
1
Y
1
A
ASP
190
A
ASP
177
1
Y
1
A
PRO
191
A
PRO
178
1
Y
1
A
ASP
192
A
ASP
179
1
Y
1
A
LYS
193
A
LYS
180
1
Y
1
A
PHE
194
A
PHE
181
1
Y
1
A
TYR
195
A
TYR
182
1
Y
1
A
THR
196
A
THR
183
1
Y
1
A
PRO
197
A
PRO
184
1
Y
1
A
LYS
198
A
LYS
185
1
Y
1
A
THR
199
A
THR
186
1
Y
1
A
ARG
200
A
ARG
187
1
Y
1
A
PRO
201
A
PRO
188
1
Y
1
A
SER
202
A
SER
189
1
Y
1
A
GLY
203
A
GLY
190
1
Y
1
A
HIS
204
A
HIS
191
1
Y
1
A
ASP
205
A
ASP
192
1
Y
1
A
ILE
206
A
ILE
193
1
Y
1
A
GLY
207
A
GLY
194
1
Y
1
A
LYS
208
A
LYS
195
1
Y
1
A
SER
209
A
SER
196
1
Y
1
A
PHE
210
A
PHE
197
1
Y
1
A
SER
211
A
SER
198
1
Y
1
A
LYS
212
A
LYS
199
1
Y
1
A
ASP
213
A
ASP
200
1
Y
1
A
ASN
214
A
ASN
201
1
Y
1
A
GLY
215
A
GLY
202
1
Y
1
A
GLY
216
A
GLY
203
1
Y
1
A
ILE
336
A
ILE
323
1
Y
1
9.79
1.60
100.20
109.99
A
A
A
CG
SD
CE
MET
MET
MET
30
30
30
N
1
A
PRO
43
-55.08
-166.40
1
A
LEU
58
27.15
70.85
1
A
GLN
59
89.99
-125.41
1
A
ARG
60
151.98
160.05
1
A
LYS
61
-22.61
102.67
1
A
LYS
62
167.02
113.48
1
A
TYR
64
115.77
-76.91
1
A
LEU
67
171.82
86.58
1
A
GLU
68
-22.17
-42.98
1
A
GLU
129
-171.98
139.10
1
A
PRO
140
-56.07
-5.94
1
A
VAL
146
-87.20
-82.97
1
A
LYS
148
-75.94
-80.97
1
A
ASN
231
-125.76
-64.29
1
A
LEU
254
-68.36
-70.11
1
A
THR
279
-55.70
-71.34
1
A
LEU
308
-120.85
-168.32
PARHCSDX.PRO
TOPHCSDX.PRO
0.2830000
0.1930000
0.1930000
2.8
30.
14886
8
99.7
RANDOM
1
0
MAD
2.8
30.
0
2245
26
0
2219
0.02
2.9
24.9
2.2
2.8
30.
1BOO
14886
0.
0.0520000
1
11.5
3.68
99.7
0.2260000
2.8
2.85
5.5
97.5
phasing
PHASES
refinement
X-PLOR
3.851
data reduction
DENZO
data scaling
SCALEPACK
PVUII DNA METHYLTRANSFERASE (CYTOSINE-N4-SPECIFIC)
1
N
N
2
N
N
A
ASP
34
A
ASP
21
HELX_P
A
SER
41
A
SER
28
1
HC
8
A
LYS
253
A
LYS
240
HELX_P
A
LEU
262
A
LEU
249
1
HZ
10
A
THR
278
A
THR
265
HELX_P
A
ARG
285
A
ARG
272
1
HA
8
A
PRO
297
A
PRO
284
HELX_P
A
ALA
304
A
ALA
291
1
HB
8
A
GLU
314
A
GLU
301
HELX_P
A
LEU
325
A
LEU
312
1
HB1
12
TRANSFERASE
TYPE II DNA-(CYTOSINE N4) METHYLTRANSFERASE, AMINO METHYLATION, SELENOMETHIONINE, MULTIWAVELENGTH ANOMALOUS DIFFRACTION, TRANSFERASE
given
0.697500
-0.604100
0.385500
-0.601600
-0.785900
-0.143000
0.389300
-0.132200
-0.911600
19.35190
106.80000
81.29650
MTP2_PROVU
UNP
1
P11409
14
336
1BOO
14
336
P11409
A
1
1
323
1
ASP
conflict
GLU
44
1BOO
A
P11409
UNP
44
31
1
1
1
1
1
1
1
1
1
1
1
1
A
TYR
23
A
TYR
10
A
THR
25
A
THR
12
A
GLY
28
A
GLY
15
A
TYR
31
A
TYR
18
A
SER
48
A
SER
35
A
THR
52
A
THR
39
A
GLY
91
A
GLY
78
A
PHE
97
A
PHE
84
A
ALA
128
A
ALA
115
A
PHE
134
A
PHE
121
A
VAL
157
A
VAL
144
A
SER
164
A
SER
151
A
LEU
222
A
LEU
209
A
ILE
225
A
ILE
212
A
LEU
268
A
LEU
255
A
ASP
271
A
ASP
258
A
LYS
289
A
LYS
276
A
GLU
294
A
GLU
281
A
SER
329
A
SER
316
A
LEU
332
A
LEU
319
A
TYR
101
A
TYR
88
A
MET
102
A
MET
89
A
VAL
105
A
VAL
92
A
ALA
107
A
ALA
94
BINDING SITE FOR RESIDUE SAH A 401
A
SAH
401
Software
18
A
GLY
33
A
GLY
20
18
1_555
A
ASP
34
A
ASP
21
18
1_555
A
SER
35
A
SER
22
18
1_555
A
SER
53
A
SER
40
18
1_555
A
PRO
55
A
PRO
42
18
1_555
A
HIS
246
A
HIS
233
18
1_555
A
ALA
248
A
ALA
235
18
1_555
A
ARG
249
A
ARG
236
18
1_555
A
PHE
250
A
PHE
237
18
1_555
A
ILE
272
A
ILE
259
18
1_555
A
PHE
273
A
PHE
260
18
1_555
A
GLY
274
A
GLY
261
18
1_555
A
GLY
275
A
GLY
262
18
1_555
A
SER
276
A
SER
263
18
1_555
A
THR
278
A
THR
265
18
1_555
A
GLU
294
A
GLU
281
18
1_555
A
MET
295
A
MET
282
18
1_555
A
TYR
299
A
TYR
286
18
1_555
4
P 1 21 1