1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Keniry, M.A.
Owen, E.A.
Shafer, R.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C6 H12 O4
148.157
beta-D-Olivopyranose
beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE
D-saccharide, beta linking
C6 H12 O4
148.157
2,6-dideoxy-beta-D-galactopyranose
2,6-DIDEOXY-BETA-D-GALACTOSE; 2,6-DIDEOXY-BETA-D-TALOSE; 2,6-dideoxy-beta-D-lyxo-hexopyranose; 2-deoxy-beta-D-fucopyranose; 2,6-dideoxy-D-galactose; 2,6-dideoxy-galactose
D-saccharide, beta linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C21 H24 O7
388.411
1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE
non-polymer
C7 H14 O4
162.184
2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose
2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE; 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-ribo-hexose
D-saccharide, beta linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
R
C
N
72
N
C
N
73
R
C
N
74
S
C
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
O
N
79
N
O
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
R
C
N
94
N
C
N
95
R
C
N
96
R
C
N
97
R
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
O
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
O
N
123
S
C
N
124
N
O
N
125
N
C
N
126
R
C
Y
127
N
N
Y
128
N
C
Y
129
N
N
Y
130
N
C
N
131
N
C
N
132
N
O
N
133
N
N
N
134
N
C
N
135
N
N
N
136
N
N
Y
137
N
C
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
O
N
153
N
P
N
154
N
O
N
155
N
O
N
156
N
O
N
157
N
C
N
158
R
C
N
159
N
O
N
160
S
C
N
161
N
O
N
162
N
C
N
163
R
C
N
164
N
N
N
165
N
C
N
166
N
O
N
167
N
N
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
C
N
189
N
O
Y
190
N
C
N
191
N
C
N
192
R
C
N
193
N
C
Y
194
N
C
Y
195
N
C
Y
196
N
C
Y
197
N
C
Y
198
N
C
Y
199
N
C
N
200
N
C
Y
201
N
C
N
202
N
O
Y
203
N
C
Y
204
N
C
N
205
N
O
N
206
N
C
N
207
S
C
N
208
N
O
N
209
N
C
N
210
N
O
N
211
S
C
N
212
N
O
N
213
S
C
N
214
N
O
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
R
C
N
241
N
C
N
242
S
C
N
243
R
C
N
244
R
C
N
245
N
C
N
246
N
C
N
247
N
O
N
248
N
O
N
249
N
O
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
MG
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
sing
Y
143
N
doub
N
144
N
sing
Y
145
N
sing
N
146
N
sing
Y
147
N
doub
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
Y
197
N
doub
Y
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
Y
208
N
sing
Y
209
N
doub
N
210
N
sing
Y
211
N
sing
Y
212
N
sing
Y
213
N
doub
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
Y
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
US
Biopolymers
BIPMAA
0161
0006-3525
54
104
114
10.1002/1097-0282(200008)54:2<104::AID-BIP3>3.0.CO;2-2
10861371
The three-dimensional structure of the 4:1 mithramycin:d(ACCCGGGT)2 complex: evidence for an interaction between the E saccharides
2000
10.2210/pdb1bp8/pdb
pdb_00001bp8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
FOUR MOLECULES OF MITHRAMYCIN (PLICAMYCIN) (RESIDUES
DDA-DDA-DXB-DDA-DDL-DDB, CHAINS C, D, E, F) BOUND IN THE MINOR
GROOVE. Oxygens of the MITHRAMYCIN chromophore (residue DXB) are
complexed with Mg++
2427.605
5'-D(*AP*CP*CP*CP*GP*GP*GP*T)-3'
2
syn
polymer
278.299
beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose
4
man
branched
422.468
2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose
4
syn
branched
24.305
MAGNESIUM ION
2
syn
non-polymer
388.411
1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE
4
syn
non-polymer
no
no
(DA)(DC)(DC)(DC)(DG)(DG)(DG)(DT)
ACCCGGGT
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
-5.896
1
20
A
1
B
8
-22.361
A_DA1:DT8_B
1
-8.404
-0.422
1.216
-0.313
-1.342
1
19
A
2
B
7
4.791
A_DC2:DG7_B
2
8.824
-0.264
0.912
-0.163
-4.274
1
19
A
3
B
6
6.749
A_DC3:DG6_B
3
-24.129
0.376
-0.098
-0.124
-18.689
1
19
A
4
B
5
2.274
A_DC4:DG5_B
4
7.135
0.501
0.481
-0.002
19.615
1
19
A
5
B
4
3.142
A_DG5:DC4_B
5
-0.427
-0.472
0.515
0.019
5.670
1
19
A
6
B
3
5.755
A_DG6:DC3_B
6
-21.658
-0.254
0.000
-0.081
1.430
1
19
A
7
B
2
3.766
A_DG7:DC2_B
7
7.320
0.339
0.950
-0.193
5.703
1
20
A
8
B
1
-20.935
A_DT8:DA1_B
8
-4.486
0.211
1.344
-0.243
3.258
36.169
A
A
1
2
6.643
B
B
8
7
3.256
4.105
1.626
-1.457
AA_DA1DC2:DG7DT8_BB
1
4.797
-7.764
35.632
-2.927
-1.941
2.714
38.261
A
A
2
3
14.767
B
B
7
6
3.017
9.419
0.130
-0.426
AA_DC2DC3:DG6DG7_BB
2
12.328
-19.327
35.082
-1.735
1.223
3.242
34.574
A
A
3
4
15.077
B
B
6
5
3.529
8.827
-0.334
-0.741
AA_DC3DC4:DG5DG6_BB
3
-5.699
9.734
32.985
-2.692
-0.373
2.229
25.798
A
A
4
5
2.148
B
B
5
4
2.246
0.959
0.194
-0.496
AA_DC4DG5:DC4DG5_BB
4
0.365
-0.818
25.778
-1.294
-0.365
3.211
36.569
A
A
5
6
12.651
B
B
4
3
3.446
7.857
0.220
-0.763
AA_DG5DG6:DC3DC4_BB
5
4.894
-7.879
35.417
-2.336
0.348
2.685
38.268
A
A
6
7
17.427
B
B
3
2
3.033
11.106
-0.116
-0.457
AA_DG6DG7:DC2DC3_BB
6
-11.248
17.649
34.963
-1.976
-1.119
3.038
34.085
A
A
7
8
13.849
B
B
2
1
3.310
8.022
-1.531
-1.550
AA_DG7DT8:DA1DC2_BB
7
-4.577
7.902
32.845
-3.906
1.892
atom_site
ndb_struct_conf_na
pdbx_struct_assembly
pdbx_struct_assembly_prop
pdbx_struct_oper_list
struct_conn
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Atomic model
Data collection
Derived calculations
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Derived calculations
Structure summary
1
0
1999-08-16
1
1
2008-04-27
1
2
2011-07-13
2
0
2019-10-02
3
0
2020-07-29
3
1
2023-12-27
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
DDA
1
n
C
DDA
1
DDA
1
n
C
DDA
2
DDA
1
n
D
DDA
1
DDA
1
n
D
DDL
2
DDA
1
n
D
MDA
3
DDA
9
n
E
DDA
1
DDA
9
n
E
DDA
2
DDA
9
n
F
DDA
1
DDA
9
n
F
DDL
2
DDA
9
n
F
MDA
3
DDA
2
n
G
DDA
1
DDA
2
n
G
DDL
2
DDA
2
n
G
MDA
3
DDA
2
n
H
DDA
1
DDA
2
n
H
DDA
2
DDA
1
n
I
DDA
1
DDA
1
n
I
DDA
2
DDA
1
n
J
DDA
1
DDA
1
n
J
DDL
2
DDA
1
n
J
MDA
3
DOlib
b-D-Olivopyranose
b-D-2,6-deoxy-Glcp
Oli
b-D-2-deoxy-Fucp
N
BNL
Y
RCSB
1998-08-13
REL
REL
oligosaccharide
oligosaccharide
DOlib1-3DOlib1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[ad122m-1b_1-5]/1-1/a3-b1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{}}
2
PDB-CARE
LINUCS
WURCS=2.0/3,3,2/[ad122m-1b_1-5][ad112m-1b_1-5][ad622m-1b_1-5_3*C]/1-2-3/a3-b1_b3-c1
3
PDB2Glycan
1.1.0
WURCS
[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2-deoxy-Fucp]{[(3+1)][b-D-2,6-deoxy-Allp]{}}}
3
PDB-CARE
LINUCS
C1
O3
DDA
DDA
2
1
2
O1
HO3
sing
C1
O3
DDL
DDA
2
1
3
O1
HO3
sing
C1
O3
MDA
DDL
3
2
3
O1
HO3
sing
n
n
n
n
n
MG
MAGNESIUM ION
DXB
1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE
THE STRUCTURE WAS DETERMINED USING HOMONUCLEAR TWO DIMENSIONAL NMR SPECTROSCOPY
7
1
NOESY
PCOSY
TOCSY
7.2
1
atm
293
K
REFINEMENT DETAILS CAN BE FOUND IN THE JOURNAL CITATION ABOVE
FULL RELAXATION MATRIX ANALYSIS AND RESTRAINED MOLECULAR DYNAMICS
MSI, WALTHAM , MA
refinement
CHARMM
23.2
structure solution
VNMR
structure solution
MARDIGRAS
structure solution
CORMA CHARMM
CHARMM
600
Varian
INOVA 600
MG
1
4
MG
MG
17
A
MG
9
4
MG
MG
18
A
DXB
1
5
DXB
DXB
21
A
DXB
9
5
DXB
DXB
22
A
DXB
2
5
DXB
DXB
19
B
DXB
1
5
DXB
DXB
20
B
A
1
n
1
DA
1
A
C
2
n
2
DC
2
A
C
3
n
3
DC
3
A
C
4
n
4
DC
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
G
7
n
7
DG
7
A
T
8
n
8
DT
8
A
A
1
n
1
DA
1
B
C
2
n
2
DC
2
B
C
3
n
3
DC
3
B
C
4
n
4
DC
4
B
G
5
n
5
DG
5
B
G
6
n
6
DG
6
B
G
7
n
7
DG
7
B
T
8
n
8
DT
8
B
author_defined_assembly
2
dimeric
9960
125
1860
A
DXB
21
M
O9
DXB
1_555
A
MG
17
K
MG
MG
1_555
A
DXB
21
M
O1
DXB
1_555
83.4
A
DXB
21
M
O9
DXB
1_555
A
MG
17
K
MG
MG
1_555
B
DXB
19
O
O9
DXB
1_555
174.1
A
DXB
21
M
O1
DXB
1_555
A
MG
17
K
MG
MG
1_555
B
DXB
19
O
O9
DXB
1_555
97.6
A
DXB
21
M
O9
DXB
1_555
A
MG
17
K
MG
MG
1_555
B
DXB
19
O
O1
DXB
1_555
111.0
A
DXB
21
M
O1
DXB
1_555
A
MG
17
K
MG
MG
1_555
B
DXB
19
O
O1
DXB
1_555
84.9
B
DXB
19
O
O9
DXB
1_555
A
MG
17
K
MG
MG
1_555
B
DXB
19
O
O1
DXB
1_555
74.9
A
DXB
22
N
O9
DXB
1_555
A
MG
18
L
MG
MG
1_555
A
DXB
22
N
O1
DXB
1_555
74.4
A
DXB
22
N
O9
DXB
1_555
A
MG
18
L
MG
MG
1_555
B
DXB
20
P
O1
DXB
1_555
95.7
A
DXB
22
N
O1
DXB
1_555
A
MG
18
L
MG
MG
1_555
B
DXB
20
P
O1
DXB
1_555
89.0
A
DXB
22
N
O9
DXB
1_555
A
MG
18
L
MG
MG
1_555
B
DXB
20
P
O9
DXB
1_555
177.6
A
DXB
22
N
O1
DXB
1_555
A
MG
18
L
MG
MG
1_555
B
DXB
20
P
O9
DXB
1_555
104.2
B
DXB
20
P
O1
DXB
1_555
A
MG
18
L
MG
MG
1_555
B
DXB
20
P
O9
DXB
1_555
86.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
3
0.071
SIDE CHAIN
1
A
DG
6
0.068
SIDE CHAIN
1
B
DC
3
0.076
SIDE CHAIN
1
B
DG
6
0.067
SIDE CHAIN
1
-3.67
0.50
129.30
125.63
A
A
A
N1
C2
N3
DA
DA
DA
1
1
1
N
1
4.39
0.50
110.60
114.99
A
A
A
C2
N3
C4
DA
DA
DA
1
1
1
N
1
4.86
0.50
117.70
122.56
A
A
A
C5
C6
N1
DA
DA
DA
1
1
1
N
1
4.43
0.70
132.30
136.73
A
A
A
C6
C5
N7
DA
DA
DA
1
1
1
N
1
9.39
1.10
109.80
119.19
A
A
A
C5'
C4'
O4'
DC
DC
DC
2
2
2
N
1
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
-4.74
0.70
119.20
114.46
A
A
A
N1
C2
N3
DC
DC
DC
2
2
2
N
1
8.51
0.60
118.90
127.41
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
1
-2.78
0.40
104.50
101.72
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
1
12.12
1.10
109.80
121.92
A
A
A
C5'
C4'
O4'
DC
DC
DC
3
3
3
N
1
3.36
0.30
108.30
111.66
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
4.15
0.60
118.90
123.05
A
A
A
N1
C2
O2
DC
DC
DC
3
3
3
N
1
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
4.45
0.60
118.90
123.35
A
A
A
N1
C2
O2
DC
DC
DC
4
4
4
N
1
-3.82
0.50
128.60
124.78
A
A
A
N3
C4
C5
DG
DG
DG
5
5
5
N
1
-2.40
0.40
110.80
108.40
A
A
A
C4
C5
N7
DG
DG
DG
5
5
5
N
1
3.88
0.60
130.40
134.28
A
A
A
C6
C5
N7
DG
DG
DG
5
5
5
N
1
-3.81
0.60
119.90
116.09
A
A
A
N1
C6
O6
DG
DG
DG
5
5
5
N
1
12.69
1.40
114.30
126.99
A
A
A
N9
C1'
C2'
DG
DG
DG
6
6
6
N
1
-4.05
0.50
128.60
124.55
A
A
A
N3
C4
C5
DG
DG
DG
6
6
6
N
1
-2.68
0.40
110.80
108.12
A
A
A
C4
C5
N7
DG
DG
DG
6
6
6
N
1
4.04
0.60
130.40
134.44
A
A
A
C6
C5
N7
DG
DG
DG
6
6
6
N
1
-4.00
0.60
119.90
115.90
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
1
2.63
0.30
108.30
110.93
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
-3.75
0.50
128.60
124.85
A
A
A
N3
C4
C5
DG
DG
DG
7
7
7
N
1
-2.80
0.40
110.80
108.00
A
A
A
C4
C5
N7
DG
DG
DG
7
7
7
N
1
4.34
0.60
130.40
134.74
A
A
A
C6
C5
N7
DG
DG
DG
7
7
7
N
1
-3.84
0.60
119.90
116.06
A
A
A
N1
C6
O6
DG
DG
DG
7
7
7
N
1
8.27
0.90
103.10
111.37
A
A
A
C4'
C3'
C2'
DT
DT
DT
8
8
8
N
1
3.91
0.30
108.30
112.21
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-3.52
0.50
129.30
125.78
B
B
B
N1
C2
N3
DA
DA
DA
1
1
1
N
1
4.50
0.50
110.60
115.10
B
B
B
C2
N3
C4
DA
DA
DA
1
1
1
N
1
4.85
0.50
117.70
122.55
B
B
B
C5
C6
N1
DA
DA
DA
1
1
1
N
1
2.46
0.40
105.80
108.26
B
B
B
N9
C4
C5
DA
DA
DA
1
1
1
N
1
4.98
0.70
132.30
137.28
B
B
B
C6
C5
N7
DA
DA
DA
1
1
1
N
1
8.57
1.10
109.80
118.37
B
B
B
C5'
C4'
O4'
DC
DC
DC
2
2
2
N
1
2.20
0.30
108.30
110.50
B
B
B
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
-4.61
0.70
119.20
114.59
B
B
B
N1
C2
N3
DC
DC
DC
2
2
2
N
1
8.33
0.60
118.90
127.23
B
B
B
N1
C2
O2
DC
DC
DC
2
2
2
N
1
8.05
1.10
109.80
117.85
B
B
B
C5'
C4'
O4'
DC
DC
DC
3
3
3
N
1
4.77
0.30
108.30
113.07
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
3.73
0.30
108.30
112.03
B
B
B
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
2.44
0.40
120.30
122.74
B
B
B
C6
N1
C2
DC
DC
DC
4
4
4
N
1
4.31
0.60
118.90
123.21
B
B
B
N1
C2
O2
DC
DC
DC
4
4
4
N
1
-4.21
0.50
128.60
124.39
B
B
B
N3
C4
C5
DG
DG
DG
5
5
5
N
1
3.67
0.60
126.00
129.67
B
B
B
N3
C4
N9
DG
DG
DG
5
5
5
N
1
-3.91
0.60
119.90
115.99
B
B
B
N1
C6
O6
DG
DG
DG
5
5
5
N
1
12.07
1.40
114.30
126.37
B
B
B
N9
C1'
C2'
DG
DG
DG
6
6
6
N
1
-4.18
0.50
128.60
124.42
B
B
B
N3
C4
C5
DG
DG
DG
6
6
6
N
1
-2.55
0.40
110.80
108.25
B
B
B
C4
C5
N7
DG
DG
DG
6
6
6
N
1
3.82
0.60
130.40
134.22
B
B
B
C6
C5
N7
DG
DG
DG
6
6
6
N
1
-4.08
0.60
119.90
115.82
B
B
B
N1
C6
O6
DG
DG
DG
6
6
6
N
1
-3.91
0.50
128.60
124.69
B
B
B
N3
C4
C5
DG
DG
DG
7
7
7
N
1
-2.92
0.40
110.80
107.88
B
B
B
C4
C5
N7
DG
DG
DG
7
7
7
N
1
4.52
0.60
130.40
134.92
B
B
B
C6
C5
N7
DG
DG
DG
7
7
7
N
1
-4.27
0.60
119.90
115.63
B
B
B
N1
C6
O6
DG
DG
DG
7
7
7
N
1
4.64
0.30
108.30
112.94
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
A
A
O5'
C5'
DA
DA
1
1
-0.642
0.025
1.418
0.776
N
1
A
A
C4
C5
DC
DC
2
2
-0.060
0.008
1.425
1.365
N
1
A
A
C5'
C4'
DC
DC
3
3
0.045
0.007
1.512
1.557
N
1
A
A
N1
C6
DC
DC
3
3
-0.084
0.006
1.367
1.283
N
1
A
A
C4
C5
DC
DC
3
3
-0.053
0.008
1.425
1.372
N
1
A
A
N1
C6
DC
DC
4
4
-0.058
0.006
1.367
1.309
N
1
A
A
N1
C2
DG
DG
5
5
-0.070
0.008
1.373
1.303
N
1
A
A
N7
C8
DG
DG
5
5
0.045
0.006
1.305
1.350
N
1
A
A
C8
N9
DG
DG
5
5
-0.068
0.007
1.374
1.306
N
1
A
A
N1
C2
DG
DG
6
6
-0.077
0.008
1.373
1.296
N
1
A
A
N7
C8
DG
DG
6
6
0.044
0.006
1.305
1.349
N
1
A
A
C8
N9
DG
DG
6
6
-0.044
0.007
1.374
1.330
N
1
A
A
N1
C2
DG
DG
7
7
-0.085
0.008
1.373
1.288
N
1
A
A
N7
C8
DG
DG
7
7
0.040
0.006
1.305
1.345
N
1
A
A
C8
N9
DG
DG
7
7
-0.049
0.007
1.374
1.325
N
1
A
A
C3'
C2'
DT
DT
8
8
-0.179
0.008
1.516
1.337
N
1
A
A
O3'
C3'
DT
DT
8
8
-0.221
0.006
1.419
1.198
N
1
A
A
C2
N3
DT
DT
8
8
-0.051
0.008
1.373
1.322
N
1
A
A
N3
C4
DT
DT
8
8
-0.050
0.008
1.382
1.332
N
1
A
A
C6
N1
DT
DT
8
8
-0.064
0.007
1.378
1.314
N
1
B
B
C4
C5
DC
DC
2
2
-0.062
0.008
1.425
1.363
N
1
B
B
C2'
C1'
DC
DC
3
3
-0.062
0.010
1.518
1.456
N
1
B
B
N1
C6
DC
DC
3
3
-0.074
0.006
1.367
1.293
N
1
B
B
C4
C5
DC
DC
3
3
-0.053
0.008
1.425
1.372
N
1
B
B
N1
C6
DC
DC
4
4
-0.059
0.006
1.367
1.308
N
1
B
B
N1
C2
DG
DG
5
5
-0.070
0.008
1.373
1.303
N
1
B
B
N7
C8
DG
DG
5
5
0.042
0.006
1.305
1.347
N
1
B
B
C8
N9
DG
DG
5
5
-0.064
0.007
1.374
1.310
N
1
B
B
N1
C2
DG
DG
6
6
-0.077
0.008
1.373
1.296
N
1
B
B
N7
C8
DG
DG
6
6
0.043
0.006
1.305
1.348
N
1
B
B
C8
N9
DG
DG
6
6
-0.046
0.007
1.374
1.328
N
1
B
B
N1
C2
DG
DG
7
7
-0.089
0.008
1.373
1.284
N
1
B
B
N7
C8
DG
DG
7
7
0.042
0.006
1.305
1.347
N
1
B
B
C2
N3
DT
DT
8
8
-0.058
0.008
1.373
1.315
N
1
B
B
C6
N1
DT
DT
8
8
-0.067
0.007
1.378
1.311
N
4:2:1 mithramycin:Mg++:d(ACCCGGGT)2 complex
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
3
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
covale
1.340
one
A
DXB
21
M
C6
DXB
1_555
C
DDA
1
C
O1
DDA
1_555
covale
1.416
one
A
DXB
21
M
C2
DXB
1_555
D
DDA
1
D
O1
DDA
1_555
covale
1.356
one
A
DXB
22
N
C6
DXB
1_555
E
DDA
1
E
O1
DDA
1_555
covale
1.431
one
A
DXB
22
N
C2
DXB
1_555
F
DDA
1
F
O1
DDA
1_555
covale
1.426
one
B
DXB
19
O
C2
DXB
1_555
G
DDA
1
G
O1
DDA
1_555
covale
1.356
one
B
DXB
19
O
C6
DXB
1_555
H
DDA
1
H
O1
DDA
1_555
covale
1.345
one
B
DXB
20
P
C6
DXB
1_555
I
DDA
1
I
O1
DDA
1_555
covale
1.412
one
B
DXB
20
P
C2
DXB
1_555
J
DDA
1
J
O1
DDA
1_555
covale
1.386
both
C
DDA
1
C
O3
DDA
1_555
C
DDA
2
C
C1
DDA
1_555
covale
1.400
both
sing
D
DDA
1
D
O3
DDA
1_555
D
DDL
2
D
C1
DDL
1_555
covale
1.414
both
sing
D
DDL
2
D
O3
DDL
1_555
D
MDA
3
D
C1
MDA
1_555
covale
1.353
both
E
DDA
1
E
O3
DDA
1_555
E
DDA
2
E
C1
DDA
1_555
covale
1.410
both
sing
F
DDA
1
F
O3
DDA
1_555
F
DDL
2
F
C1
DDL
1_555
covale
1.424
both
sing
F
DDL
2
F
O3
DDL
1_555
F
MDA
3
F
C1
MDA
1_555
covale
1.410
both
sing
G
DDA
1
G
O3
DDA
1_555
G
DDL
2
G
C1
DDL
1_555
covale
1.432
both
sing
G
DDL
2
G
O3
DDL
1_555
G
MDA
3
G
C1
MDA
1_555
covale
1.402
both
H
DDA
1
H
O3
DDA
1_555
H
DDA
2
H
C1
DDA
1_555
covale
1.404
both
I
DDA
1
I
O3
DDA
1_555
I
DDA
2
I
C1
DDA
1_555
covale
1.398
both
sing
J
DDA
1
J
O3
DDA
1_555
J
DDL
2
J
C1
DDL
1_555
covale
1.414
both
sing
J
DDL
2
J
O3
DDL
1_555
J
MDA
3
J
C1
MDA
1_555
metalc
1.652
A
MG
17
K
MG
MG
1_555
A
DXB
21
M
O9
DXB
1_555
metalc
2.133
A
MG
17
K
MG
MG
1_555
A
DXB
21
M
O1
DXB
1_555
metalc
2.255
A
MG
17
K
MG
MG
1_555
B
DXB
19
O
O9
DXB
1_555
metalc
2.072
A
MG
17
K
MG
MG
1_555
B
DXB
19
O
O1
DXB
1_555
metalc
2.305
A
MG
18
L
MG
MG
1_555
A
DXB
22
N
O9
DXB
1_555
metalc
2.031
A
MG
18
L
MG
MG
1_555
A
DXB
22
N
O1
DXB
1_555
metalc
2.112
A
MG
18
L
MG
MG
1_555
B
DXB
20
P
O1
DXB
1_555
metalc
1.657
A
MG
18
L
MG
MG
1_555
B
DXB
20
P
O9
DXB
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N1
DA
1
1_555
B
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N6
DA
1
1_555
B
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
6
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
6
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
6
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
B
DG
5
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
B
DG
5
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
B
DG
5
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
4
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
4
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
4
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
3
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
3
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
3
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
1
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
1
B
N6
DA
1
1_555
DNA
MITHRAMYCIN, DNA, OLIGONUCLEOTIDE
1BP8
PDB
1
1BP8
1
8
1BP8
1
8
1BP8
A
1
1
8
1
8
1BP8
1
8
1BP8
B
1
1
8
1
P 1