0.025317 0.000000 0.000743 0.000000 0.014670 0.000000 0.000000 0.000000 0.013289 0.00000 0.00000 0.00000 Sawaya, M.R. Pelletier, H. Kumar, A. Wilson, S.H. Kraut, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 91.68 90.00 39.499 68.166 75.280 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N P N 271 N O N 272 N O N 273 N O N 274 N O N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 R C N 311 N O N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N N Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C N 361 N O N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N doub Y 324 N sing Y 325 N sing N 326 N sing Y 327 N sing Y 328 N doub N 329 N sing Y 330 N doub N 331 N sing Y 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing Y 347 N doub Y 348 N sing Y 349 N sing N 350 N sing Y 351 N doub N 352 N sing Y 353 N doub N 354 N sing Y 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing US Science SCIEAS 0038 0036-8075 264 1930 1935 7516581 Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. 1994 US Science SCIEAS 0038 0036-8075 264 1891 Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template-Primer, and ddCTP 1994 US J.Biol.Chem. JBCHA3 0071 0021-9258 265 2124 Studies of the Domain Structure of Mammalian DNA Polymerase Beta. Identification of a Discrete Template Binding Domain 1990 10.2210/pdb1bpd/pdb pdb_00001bpd 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 38388.762 DNA POLYMERASE BETA 2.7.7.7 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer no no MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus sample 10116 Rattus norvegicus 2.64 53.37 chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1994-06-22 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1994-04-12 REL PO4 PHOSPHATE ION RESIDUE PHO IS PROBABLY PHOSPHATE OR SULFATE ANION IN THE DEOXYNUCLEOSIDE TRIPHOSPHATE BINDING SITE. THE N-TERMINAL METHIONINE IS INCLUDED IN THE GENE SEQUENCE EVEN THOUGH IT IS REMOVED AFTER TRANSLATION IN THE CELL; SEE MATSUKAGE ET AL., J. BIOL. CHEM. 262, 8960, (1987). FOR THE AMINO ACID SEQUENCE SEE A. KUMAR ET AL., J. BIOL. CHEM. 265, 2124, (1990). SEQUENCE ADVISORY NOTICE DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: DPOB_RAT SWISS-PROT RESIDUE PDB SEQRES NAME NUMBER NAME CHAIN SEQ/INSERT CODE ARG 227 LEU 228 THE PAPER BY KUMAR, ET AL., J.BIOL.CHEM., 265, 2124, (1990) REPORTS A CORRECTION TO THE SEQUENCE GIVEN IN SWISS-PROT (SEE REFERENCE 3 ABOVE). PO4 337 2 PO4 PO4 337 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A GLU 9 n 9 GLU 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A ASN 12 n 12 ASN 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A ILE 15 n 15 ILE 15 A THR 16 n 16 THR 16 A ASP 17 n 17 ASP 17 A MET 18 n 18 MET 18 A LEU 19 n 19 LEU 19 A VAL 20 n 20 VAL 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A ALA 23 n 23 ALA 23 A ASN 24 n 24 ASN 24 A PHE 25 n 25 PHE 25 A GLU 26 n 26 GLU 26 A LYS 27 n 27 LYS 27 A ASN 28 n 28 ASN 28 A VAL 29 n 29 VAL 29 A SER 30 n 30 SER 30 A GLN 31 n 31 GLN 31 A ALA 32 n 32 ALA 32 A ILE 33 n 33 ILE 33 A HIS 34 n 34 HIS 34 A LYS 35 n 35 LYS 35 A TYR 36 n 36 TYR 36 A ASN 37 n 37 ASN 37 A ALA 38 n 38 ALA 38 A TYR 39 n 39 TYR 39 A ARG 40 n 40 ARG 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A ALA 43 n 43 ALA 43 A SER 44 n 44 SER 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A PRO 50 n 50 PRO 50 A HIS 51 n 51 HIS 51 A LYS 52 n 52 LYS 52 A ILE 53 n 53 ILE 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A GLY 56 n 56 GLY 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A LYS 61 n 61 LYS 61 A LEU 62 n 62 LEU 62 A PRO 63 n 63 PRO 63 A GLY 64 n 64 GLY 64 A VAL 65 n 65 VAL 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A LYS 68 n 68 LYS 68 A ILE 69 n 69 ILE 69 A ALA 70 n 70 ALA 70 A GLU 71 n 71 GLU 71 A LYS 72 n 72 LYS 72 A ILE 73 n 73 ILE 73 A ASP 74 n 74 ASP 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A LEU 77 n 77 LEU 77 A ALA 78 n 78 ALA 78 A THR 79 n 79 THR 79 A GLY 80 n 80 GLY 80 A LYS 81 n 81 LYS 81 A LEU 82 n 82 LEU 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A LEU 85 n 85 LEU 85 A GLU 86 n 86 GLU 86 A LYS 87 n 87 LYS 87 A ILE 88 n 88 ILE 88 A ARG 89 n 89 ARG 89 A GLN 90 n 90 GLN 90 A ASP 91 n 91 ASP 91 A ASP 92 n 92 ASP 92 A THR 93 n 93 THR 93 A SER 94 n 94 SER 94 A SER 95 n 95 SER 95 A SER 96 n 96 SER 96 A ILE 97 n 97 ILE 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A LEU 100 n 100 LEU 100 A THR 101 n 101 THR 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A THR 104 n 104 THR 104 A GLY 105 n 105 GLY 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A PRO 108 n 108 PRO 108 A SER 109 n 109 SER 109 A ALA 110 n 110 ALA 110 A ALA 111 n 111 ALA 111 A ARG 112 n 112 ARG 112 A LYS 113 n 113 LYS 113 A LEU 114 n 114 LEU 114 A VAL 115 n 115 VAL 115 A ASP 116 n 116 ASP 116 A GLU 117 n 117 GLU 117 A GLY 118 n 118 GLY 118 A ILE 119 n 119 ILE 119 A LYS 120 n 120 LYS 120 A THR 121 n 121 THR 121 A LEU 122 n 122 LEU 122 A GLU 123 n 123 GLU 123 A ASP 124 n 124 ASP 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A ASN 128 n 128 ASN 128 A GLU 129 n 129 GLU 129 A ASP 130 n 130 ASP 130 A LYS 131 n 131 LYS 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A HIS 134 n 134 HIS 134 A HIS 135 n 135 HIS 135 A GLN 136 n 136 GLN 136 A ARG 137 n 137 ARG 137 A ILE 138 n 138 ILE 138 A GLY 139 n 139 GLY 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A TYR 142 n 142 TYR 142 A PHE 143 n 143 PHE 143 A GLU 144 n 144 GLU 144 A ASP 145 n 145 ASP 145 A PHE 146 n 146 PHE 146 A GLU 147 n 147 GLU 147 A LYS 148 n 148 LYS 148 A ARG 149 n 149 ARG 149 A ILE 150 n 150 ILE 150 A PRO 151 n 151 PRO 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A GLU 154 n 154 GLU 154 A MET 155 n 155 MET 155 A LEU 156 n 156 LEU 156 A GLN 157 n 157 GLN 157 A MET 158 n 158 MET 158 A GLN 159 n 159 GLN 159 A ASP 160 n 160 ASP 160 A ILE 161 n 161 ILE 161 A VAL 162 n 162 VAL 162 A LEU 163 n 163 LEU 163 A ASN 164 n 164 ASN 164 A GLU 165 n 165 GLU 165 A VAL 166 n 166 VAL 166 A LYS 167 n 167 LYS 167 A LYS 168 n 168 LYS 168 A LEU 169 n 169 LEU 169 A ASP 170 n 170 ASP 170 A PRO 171 n 171 PRO 171 A GLU 172 n 172 GLU 172 A TYR 173 n 173 TYR 173 A ILE 174 n 174 ILE 174 A ALA 175 n 175 ALA 175 A THR 176 n 176 THR 176 A VAL 177 n 177 VAL 177 A CYS 178 n 178 CYS 178 A GLY 179 n 179 GLY 179 A SER 180 n 180 SER 180 A PHE 181 n 181 PHE 181 A ARG 182 n 182 ARG 182 A ARG 183 n 183 ARG 183 A GLY 184 n 184 GLY 184 A ALA 185 n 185 ALA 185 A GLU 186 n 186 GLU 186 A SER 187 n 187 SER 187 A SER 188 n 188 SER 188 A GLY 189 n 189 GLY 189 A ASP 190 n 190 ASP 190 A MET 191 n 191 MET 191 A ASP 192 n 192 ASP 192 A VAL 193 n 193 VAL 193 A LEU 194 n 194 LEU 194 A LEU 195 n 195 LEU 195 A THR 196 n 196 THR 196 A HIS 197 n 197 HIS 197 A PRO 198 n 198 PRO 198 A ASN 199 n 199 ASN 199 A PHE 200 n 200 PHE 200 A THR 201 n 201 THR 201 A SER 202 n 202 SER 202 A GLU 203 n 203 GLU 203 A SER 204 n 204 SER 204 A SER 205 n 205 SER 205 A LYS 206 n 206 LYS 206 A GLN 207 n 207 GLN 207 A PRO 208 n 208 PRO 208 A LYS 209 n 209 LYS 209 A LEU 210 n 210 LEU 210 A LEU 211 n 211 LEU 211 A HIS 212 n 212 HIS 212 A ARG 213 n 213 ARG 213 A VAL 214 n 214 VAL 214 A VAL 215 n 215 VAL 215 A GLU 216 n 216 GLU 216 A GLN 217 n 217 GLN 217 A LEU 218 n 218 LEU 218 A GLN 219 n 219 GLN 219 A LYS 220 n 220 LYS 220 A VAL 221 n 221 VAL 221 A ARG 222 n 222 ARG 222 A PHE 223 n 223 PHE 223 A ILE 224 n 224 ILE 224 A THR 225 n 225 THR 225 A ASP 226 n 226 ASP 226 A THR 227 n 227 THR 227 A LEU 228 n 228 LEU 228 A SER 229 n 229 SER 229 A LYS 230 n 230 LYS 230 A GLY 231 n 231 GLY 231 A GLU 232 n 232 GLU 232 A THR 233 n 233 THR 233 A LYS 234 n 234 LYS 234 A PHE 235 n 235 PHE 235 A MET 236 n 236 MET 236 A GLY 237 n 237 GLY 237 A VAL 238 n 238 VAL 238 A CYS 239 n 239 CYS 239 A GLN 240 n 240 GLN 240 A LEU 241 n 241 LEU 241 A PRO 242 n 242 PRO 242 A SER 243 n 243 SER 243 A GLU 244 n 244 GLU 244 A ASN 245 n 245 ASN 245 A n 246 246 A n 247 247 A n 248 248 A GLU 249 n 249 GLU 249 A TYR 250 n 250 TYR 250 A PRO 251 n 251 PRO 251 A HIS 252 n 252 HIS 252 A ARG 253 n 253 ARG 253 A ARG 254 n 254 ARG 254 A ILE 255 n 255 ILE 255 A ASP 256 n 256 ASP 256 A ILE 257 n 257 ILE 257 A ARG 258 n 258 ARG 258 A LEU 259 n 259 LEU 259 A ILE 260 n 260 ILE 260 A PRO 261 n 261 PRO 261 A LYS 262 n 262 LYS 262 A ASP 263 n 263 ASP 263 A GLN 264 n 264 GLN 264 A TYR 265 n 265 TYR 265 A TYR 266 n 266 TYR 266 A CYS 267 n 267 CYS 267 A GLY 268 n 268 GLY 268 A VAL 269 n 269 VAL 269 A LEU 270 n 270 LEU 270 A TYR 271 n 271 TYR 271 A PHE 272 n 272 PHE 272 A THR 273 n 273 THR 273 A GLY 274 n 274 GLY 274 A SER 275 n 275 SER 275 A ASP 276 n 276 ASP 276 A ILE 277 n 277 ILE 277 A PHE 278 n 278 PHE 278 A ASN 279 n 279 ASN 279 A LYS 280 n 280 LYS 280 A ASN 281 n 281 ASN 281 A MET 282 n 282 MET 282 A ARG 283 n 283 ARG 283 A ALA 284 n 284 ALA 284 A HIS 285 n 285 HIS 285 A ALA 286 n 286 ALA 286 A LEU 287 n 287 LEU 287 A GLU 288 n 288 GLU 288 A LYS 289 n 289 LYS 289 A GLY 290 n 290 GLY 290 A PHE 291 n 291 PHE 291 A THR 292 n 292 THR 292 A ILE 293 n 293 ILE 293 A ASN 294 n 294 ASN 294 A GLU 295 n 295 GLU 295 A TYR 296 n 296 TYR 296 A THR 297 n 297 THR 297 A ILE 298 n 298 ILE 298 A ARG 299 n 299 ARG 299 A PRO 300 n 300 PRO 300 A LEU 301 n 301 LEU 301 A GLY 302 n 302 GLY 302 A VAL 303 n 303 VAL 303 A THR 304 n 304 THR 304 A GLY 305 n 305 GLY 305 A VAL 306 n 306 VAL 306 A ALA 307 n 307 ALA 307 A GLY 308 n 308 GLY 308 A GLU 309 n 309 GLU 309 A PRO 310 n 310 PRO 310 A LEU 311 n 311 LEU 311 A PRO 312 n 312 PRO 312 A VAL 313 n 313 VAL 313 A ASP 314 n 314 ASP 314 A SER 315 n 315 SER 315 A GLU 316 n 316 GLU 316 A GLN 317 n 317 GLN 317 A ASP 318 n 318 ASP 318 A ILE 319 n 319 ILE 319 A PHE 320 n 320 PHE 320 A ASP 321 n 321 ASP 321 A TYR 322 n 322 TYR 322 A ILE 323 n 323 ILE 323 A GLN 324 n 324 GLN 324 A TRP 325 n 325 TRP 325 A ARG 326 n 326 ARG 326 A TYR 327 n 327 TYR 327 A ARG 328 n 328 ARG 328 A GLU 329 n 329 GLU 329 A PRO 330 n 330 PRO 330 A LYS 331 n 331 LYS 331 A ASP 332 n 332 ASP 332 A ARG 333 n 333 ARG 333 A SER 334 n 334 SER 334 A GLU 335 n 335 GLU 335 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 176 A O THR 176 A N LEU 194 A N LEU 194 A N MET 191 A N MET 191 A O ARG 254 A O ARG 254 A N ILE 257 A N ILE 257 A O PHE 235 A O PHE 235 A O VAL 238 A O VAL 238 A N THR 225 A N THR 225 A O ASN 294 A O ASN 294 A N THR 297 A N THR 297 1 A CG PHE 25 A CG PHE 25 1 Y 1 A CD1 PHE 25 A CD1 PHE 25 1 Y 1 A CD2 PHE 25 A CD2 PHE 25 1 Y 1 A CE1 PHE 25 A CE1 PHE 25 1 Y 1 A CE2 PHE 25 A CE2 PHE 25 1 Y 1 A CZ PHE 25 A CZ PHE 25 1 Y 1 A CG ASN 28 A CG ASN 28 1 Y 1 A OD1 ASN 28 A OD1 ASN 28 1 Y 1 A ND2 ASN 28 A ND2 ASN 28 1 Y 1 A OG SER 55 A OG SER 55 1 Y 1 A CG LYS 60 A CG LYS 60 1 Y 1 A CD LYS 60 A CD LYS 60 1 Y 1 A CE LYS 60 A CE LYS 60 1 Y 1 A NZ LYS 60 A NZ LYS 60 1 Y 1 A CG LYS 68 A CG LYS 68 1 Y 1 A CD LYS 68 A CD LYS 68 1 Y 1 A CE LYS 68 A CE LYS 68 1 Y 1 A NZ LYS 68 A NZ LYS 68 1 Y 1 A CG GLU 71 A CG GLU 71 1 Y 1 A CD GLU 71 A CD GLU 71 1 Y 1 A OE1 GLU 71 A OE1 GLU 71 1 Y 1 A OE2 GLU 71 A OE2 GLU 71 1 Y 1 A CG LYS 72 A CG LYS 72 1 Y 1 A CD LYS 72 A CD LYS 72 1 Y 1 A CE LYS 72 A CE LYS 72 1 Y 1 A NZ LYS 72 A NZ LYS 72 1 Y 1 A CG LYS 81 A CG LYS 81 1 Y 1 A CD LYS 81 A CD LYS 81 1 Y 1 A CE LYS 81 A CE LYS 81 1 Y 1 A NZ LYS 81 A NZ LYS 81 1 Y 1 A CG LEU 82 A CG LEU 82 1 Y 1 A CD1 LEU 82 A CD1 LEU 82 1 Y 1 A CD2 LEU 82 A CD2 LEU 82 1 Y 1 A CG GLN 90 A CG GLN 90 1 Y 1 A CD GLN 90 A CD GLN 90 1 Y 1 A OE1 GLN 90 A OE1 GLN 90 1 Y 1 A NE2 GLN 90 A NE2 GLN 90 1 Y 1 A CG ASP 92 A CG ASP 92 1 Y 1 A OD1 ASP 92 A OD1 ASP 92 1 Y 1 A OD2 ASP 92 A OD2 ASP 92 1 Y 1 A OG SER 109 A OG SER 109 1 Y 1 A CG1 ILE 119 A CG1 ILE 119 1 Y 1 A CG2 ILE 119 A CG2 ILE 119 1 Y 1 A CD1 ILE 119 A CD1 ILE 119 1 Y 1 A CG GLU 123 A CG GLU 123 1 Y 1 A CD GLU 123 A CD GLU 123 1 Y 1 A OE1 GLU 123 A OE1 GLU 123 1 Y 1 A OE2 GLU 123 A OE2 GLU 123 1 Y 1 A CG LYS 131 A CG LYS 131 1 Y 1 A CD LYS 131 A CD LYS 131 1 Y 1 A CE LYS 131 A CE LYS 131 1 Y 1 A NZ LYS 131 A NZ LYS 131 1 Y 1 A CG LYS 220 A CG LYS 220 1 Y 1 A CD LYS 220 A CD LYS 220 1 Y 1 A CE LYS 220 A CE LYS 220 1 Y 1 A NZ LYS 220 A NZ LYS 220 1 Y 1 A OG SER 243 A OG SER 243 1 Y 1 A CG GLU 244 A CG GLU 244 1 Y 1 A CD GLU 244 A CD GLU 244 1 Y 1 A OE1 GLU 244 A OE1 GLU 244 1 Y 1 A OE2 GLU 244 A OE2 GLU 244 1 Y 1 A CG ASN 245 A CG ASN 245 1 Y 1 A OD1 ASN 245 A OD1 ASN 245 1 Y 1 A ND2 ASN 245 A ND2 ASN 245 1 Y 1 A CG LYS 280 A CG LYS 280 1 Y 1 A CD LYS 280 A CD LYS 280 1 Y 1 A CE LYS 280 A CE LYS 280 1 Y 1 A NZ LYS 280 A NZ LYS 280 1 Y 1 A CG1 VAL 303 A CG1 VAL 303 1 Y 1 A CG2 VAL 303 A CG2 VAL 303 1 Y 1 A OG1 THR 304 A OG1 THR 304 1 Y 1 A CG2 THR 304 A CG2 THR 304 1 Y 1 A CG1 VAL 306 A CG1 VAL 306 1 Y 1 A CG2 VAL 306 A CG2 VAL 306 1 Y 1 A CG ARG 326 A CG ARG 326 1 Y 1 A CD ARG 326 A CD ARG 326 1 Y 1 A NE ARG 326 A NE ARG 326 1 Y 1 A CZ ARG 326 A CZ ARG 326 1 Y 1 A NH1 ARG 326 A NH1 ARG 326 1 Y 1 A NH2 ARG 326 A NH2 ARG 326 1 Y 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A LYS 3 A LYS 3 1 Y 1 A ARG 4 A ARG 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A ALA 6 A ALA 6 1 Y 1 A PRO 7 A PRO 7 1 Y 1 A GLN 8 A GLN 8 1 Y 1 A ASP 246 A ASP 246 1 Y 1 A GLU 247 A GLU 247 1 Y 1 A ASN 248 A ASN 248 1 Y 1 A A C CD ILE PRO 150 151 1.79 1 -6.46 0.90 118.30 111.84 A A A CB CG OD1 ASP ASP ASP 17 17 17 N 1 6.31 0.90 118.30 124.61 A A A CB CG OD1 ASP ASP ASP 91 91 91 N 1 -6.19 0.90 118.30 112.11 A A A CB CG OD2 ASP ASP ASP 91 91 91 N 1 -16.10 2.10 128.40 112.30 A A A C N CD GLY PRO PRO 107 108 108 Y 1 -13.96 2.30 115.30 101.34 A A A CA CB CG LEU LEU LEU 114 114 114 N 1 -5.69 0.90 118.30 112.61 A A A CB CG OD1 ASP ASP ASP 116 116 116 N 1 -7.07 0.90 118.30 111.23 A A A CB CG OD2 ASP ASP ASP 124 124 124 N 1 14.63 1.40 123.60 138.23 A A A CD NE CZ ARG ARG ARG 137 137 137 N 1 7.63 0.50 120.30 127.93 A A A NE CZ NH1 ARG ARG ARG 137 137 137 N 1 -5.15 0.50 120.30 115.15 A A A NE CZ NH2 ARG ARG ARG 137 137 137 N 1 -6.40 0.90 118.30 111.90 A A A CB CG OD1 ASP ASP ASP 145 145 145 N 1 -49.60 2.10 128.40 78.80 A A A C N CD ILE PRO PRO 150 151 151 Y 1 -12.22 1.80 114.00 101.78 A A A CA CB SG CYS CYS CYS 178 178 178 N 1 -6.30 0.90 118.30 112.00 A A A CB CG OD2 ASP ASP ASP 192 192 192 N 1 -27.69 2.10 128.40 100.71 A A A C N CD HIS PRO PRO 197 198 198 Y 1 -32.08 2.10 128.40 96.32 A A A C N CD GLN PRO PRO 207 208 208 Y 1 6.40 0.90 118.30 124.70 A A A CB CG OD1 ASP ASP ASP 226 226 226 N 1 -6.62 0.90 118.30 111.68 A A A CB CG OD2 ASP ASP ASP 226 226 226 N 1 3.18 0.50 120.30 123.48 A A A NE CZ NH1 ARG ARG ARG 253 253 253 N 1 -7.56 0.90 118.30 110.74 A A A CB CG OD1 ASP ASP ASP 263 263 263 N 1 -12.61 2.10 122.30 109.69 A A A C N CA THR GLY GLY 273 274 274 Y 1 -6.23 0.90 118.30 112.07 A A A CB CG OD2 ASP ASP ASP 276 276 276 N 1 10.11 1.50 119.30 129.41 A A A C N CA GLU PRO PRO 309 310 310 Y 1 -23.72 2.10 128.40 104.68 A A A C N CD GLU PRO PRO 309 310 310 Y 1 -6.08 0.90 118.30 112.22 A A A CB CG OD1 ASP ASP ASP 314 314 314 N 1 -8.14 0.90 118.30 110.16 A A A CB CG OD1 ASP ASP ASP 332 332 332 N 1 6.36 0.90 118.30 124.66 A A A CB CG OD2 ASP ASP ASP 332 332 332 N 1 A A C N SER GLN 30 31 0.141 0.023 1.336 1.477 Y 1 A A CD OE1 GLU GLU 144 144 0.071 0.011 1.252 1.323 N 1 A A CD OE1 GLU GLU 186 186 0.067 0.011 1.252 1.319 N 1 A A CD OE1 GLU GLU 232 232 0.067 0.011 1.252 1.319 N 1 A A CD OE2 GLU GLU 295 295 0.072 0.011 1.252 1.324 N 1 A A CD OE1 GLU GLU 329 329 0.068 0.011 1.252 1.320 N 1 A THR 10 13.45 104.41 1 A SER 30 -114.16 -146.75 1 A ALA 32 -32.55 87.90 1 A ALA 78 -93.45 -89.63 1 A GLU 86 -37.44 -19.56 1 A ASP 92 43.75 -120.02 1 A PRO 108 -22.23 -76.97 1 A ASP 116 -59.95 -7.66 1 A LYS 127 -96.85 -63.49 1 A ASN 128 -56.22 26.31 1 A LYS 141 -40.18 -17.95 1 A PHE 143 -27.22 -53.90 1 A PRO 171 -60.00 -7.74 1 A THR 176 -168.04 104.03 1 A CYS 178 -105.12 -154.55 1 A SER 180 -7.84 -43.57 1 A HIS 197 -178.80 119.80 1 A PRO 198 -22.83 -29.22 1 A PRO 208 -19.52 -64.51 1 A LEU 210 -59.52 -76.79 1 A ARG 222 72.96 42.36 1 A GLN 240 -176.44 147.98 1 A GLU 244 -166.89 -56.73 1 A PRO 251 -58.90 -170.42 1 A TYR 271 -62.87 -74.67 1 A PHE 272 -48.47 -13.34 1 A THR 273 -60.63 -72.25 1 A SER 275 52.17 124.52 1 A GLU 295 -26.71 -21.61 1 A THR 304 87.85 -0.03 1 A ALA 307 169.39 152.64 1 A GLU 309 144.83 65.58 1 A PRO 310 -35.27 136.44 1 A GLN 324 34.96 68.27 1 A TYR 327 -46.81 108.04 1 A ASP 332 -59.90 39.89 0.1930000 3.60 20. 4153 1 0.0 3.60 20. 0 2533 5 0 2528 0.017 2.9 refinement TNT CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM 1 N N 2 N N A ASN 12 A ASN 12 HELX_P A SER 30 A SER 30 1 1 19 A ALA 32 A ALA 32 HELX_P A TYR 49 A TYR 49 1 2 18 A SER 55 A SER 55 HELX_P A LEU 62 A LEU 62 1 3 8 A GLY 66 A GLY 66 HELX_P A THR 79 A THR 79 1 4 14 A LEU 82 A LEU 82 HELX_P A ASP 91 A ASP 91 1 5 10 A ASP 92 A ASP 92 HELX_P A VAL 103 A VAL 103 1 6 12 A GLY 107 A GLY 107 HELX_P A ASP 116 A ASP 116 1 7 10 A THR 121 A THR 121 HELX_P A ARG 126 A ARG 126 1 8 6 A ASN 128 A ASN 128 HELX_P A LEU 132 A LEU 132 5 9 5 A ASN 133 A ASN 133 HELX_P A PHE 143 A PHE 143 1 10 11 A TYR 142 A TYR 142 HELX_P A GLU 147 A GLU 147 1 11 6 A PRO 151 A PRO 151 HELX_P A ASP 170 A ASP 170 1 12 20 A PRO 208 A PRO 208 HELX_P A VAL 221 A VAL 221 1 13 14 A GLN 264 A GLN 264 HELX_P A GLY 274 A GLY 274 1 14 11 A SER 275 A SER 275 HELX_P A LYS 289 A LYS 289 1 15 15 A SER 315 A SER 315 HELX_P A ILE 323 A ILE 323 1 16 9 NUCLEOTIDYLTRANSFERASE NUCLEOTIDYLTRANSFERASE DPOB_RAT UNP 1 1 P06766 SKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGK LRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDI VLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQL PSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFD YIQWRYREPKDRSE 1 334 1BPD 2 335 P06766 A 1 2 335 5 2 anti-parallel parallel anti-parallel anti-parallel anti-parallel A ILE 174 A ILE 174 A VAL 177 A VAL 177 A MET 191 A MET 191 A THR 196 A THR 196 A HIS 252 A HIS 252 A LEU 259 A LEU 259 A LYS 234 A LYS 234 A GLN 240 A GLN 240 A ILE 224 A ILE 224 A LYS 230 A LYS 230 A PHE 291 A PHE 291 A ASN 294 A ASN 294 A THR 297 A THR 297 A PRO 300 A PRO 300 BINDING SITE FOR RESIDUE PO4 A 337 A PO4 337 Software 3 A ARG 149 A ARG 149 3 1_555 A SER 180 A SER 180 3 1_555 A GLY 189 A GLY 189 3 1_555 4 P 1 21 1