0.025433
0.000000
0.000786
0.000000
0.014661
0.000000
0.000000
0.000000
0.013333
0.00000
0.00000
0.00000
ALA 73 - ALA 74 OMEGA = 121.73 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
GLY 274 - SER 275 OMEGA = 0.24 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Sawaya, M.R.
Pelletier, H.
Kumar, A.
Wilson, S.H.
Kraut, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
91.77
90.00
39.319
68.208
75.038
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H16 N5 O12 P3
491.182
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
P
N
89
N
O
N
90
N
O
N
91
N
O
N
92
S
P
N
93
N
O
N
94
N
O
N
95
N
O
N
96
S
P
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
C
N
102
R
C
N
103
N
O
N
104
S
C
N
105
N
O
N
106
N
C
N
107
R
C
Y
108
N
N
Y
109
N
C
Y
110
N
N
Y
111
N
C
Y
112
N
C
N
113
N
N
Y
114
N
N
Y
115
N
C
Y
116
N
N
Y
117
N
C
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
N
C
N
175
N
C
N
176
N
O
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
Y
188
N
C
Y
189
N
N
Y
190
N
C
Y
191
N
C
Y
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
S
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
S
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
Y
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
Y
121
N
sing
Y
122
N
doub
N
123
N
sing
Y
124
N
doub
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
N
129
N
sing
Y
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
US
Science
SCIEAS
0038
0036-8075
264
1930
1935
7516581
Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.
1994
US
Science
SCIEAS
0038
0036-8075
264
1891
Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template-Primer, and ddCTP
1994
10.2210/pdb1bpe/pdb
pdb_00001bpe
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
38417.828
DNA POLYMERASE BETA
2.7.7.7
1
man
polymer
491.182
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
1
syn
non-polymer
no
no
MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRRDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD
IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ
LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF
DYIQWRYREPKDRSE
MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRRDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD
IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ
LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF
DYIQWRYREPKDRSE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
sample
10116
Rattus norvegicus
2.62
53.00
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1994-07-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1994-04-12
REL
DTP
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
SEQUENCE ADVISORY NOTICE
DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE.
SWISS-PROT ENTRY NAME: DPOB_HUMAN
SWISS-PROT RESIDUE PDB SEQRES
GLN 89 ARG 90
ARG 227 LEU 228
THE N-TERMINAL METHIONINE IS INCLUDED IN THE GENE SEQUENCE
EVEN THOUGH IT IS REMOVED AFTER TRANSLATION IN THE CELL;
SEE MATSUKAGE ET AL., J. BIOL. CHEM. 262, 8960, (1987).
FOR THE AMINO ACID SEQUENCE SEE A. KUMAR ET AL., J. BIOL.
CHEM. 265, 2124, (1990).
DTP
338
2
DTP
DTP
338
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
ASN
12
n
12
ASN
12
A
GLY
13
n
13
GLY
13
A
GLY
14
n
14
GLY
14
A
ILE
15
n
15
ILE
15
A
THR
16
n
16
THR
16
A
ASP
17
n
17
ASP
17
A
MET
18
n
18
MET
18
A
LEU
19
n
19
LEU
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
ALA
23
n
23
ALA
23
A
ASN
24
n
24
ASN
24
A
PHE
25
n
25
PHE
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
n
45
45
A
n
46
46
A
n
47
47
A
n
48
48
A
n
49
49
A
n
50
50
A
n
51
51
A
n
52
52
A
n
53
53
A
n
54
54
A
n
55
55
A
GLY
56
n
56
GLY
56
A
ALA
57
n
57
ALA
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
LYS
61
n
61
LYS
61
A
LEU
62
n
62
LEU
62
A
PRO
63
n
63
PRO
63
A
n
64
64
A
n
65
65
A
n
66
66
A
n
67
67
A
n
68
68
A
n
69
69
A
n
70
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
GLU
75
n
75
GLU
75
A
PHE
76
n
76
PHE
76
A
LEU
77
n
77
LEU
77
A
ALA
78
n
78
ALA
78
A
THR
79
n
79
THR
79
A
GLY
80
n
80
GLY
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
ILE
88
n
88
ILE
88
A
ARG
89
n
89
ARG
89
A
ARG
90
n
90
ARG
90
A
ASP
91
n
91
ASP
91
A
ASP
92
n
92
ASP
92
A
THR
93
n
93
THR
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
SER
96
n
96
SER
96
A
ILE
97
n
97
ILE
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
LEU
100
n
100
LEU
100
A
THR
101
n
101
THR
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
THR
104
n
104
THR
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
GLY
107
n
107
GLY
107
A
PRO
108
n
108
PRO
108
A
SER
109
n
109
SER
109
A
ALA
110
n
110
ALA
110
A
ALA
111
n
111
ALA
111
A
ARG
112
n
112
ARG
112
A
LYS
113
n
113
LYS
113
A
LEU
114
n
114
LEU
114
A
VAL
115
n
115
VAL
115
A
ASP
116
n
116
ASP
116
A
GLU
117
n
117
GLU
117
A
GLY
118
n
118
GLY
118
A
ILE
119
n
119
ILE
119
A
LYS
120
n
120
LYS
120
A
THR
121
n
121
THR
121
A
LEU
122
n
122
LEU
122
A
GLU
123
n
123
GLU
123
A
ASP
124
n
124
ASP
124
A
LEU
125
n
125
LEU
125
A
ARG
126
n
126
ARG
126
A
LYS
127
n
127
LYS
127
A
ASN
128
n
128
ASN
128
A
GLU
129
n
129
GLU
129
A
ASP
130
n
130
ASP
130
A
LYS
131
n
131
LYS
131
A
LEU
132
n
132
LEU
132
A
ASN
133
n
133
ASN
133
A
HIS
134
n
134
HIS
134
A
HIS
135
n
135
HIS
135
A
GLN
136
n
136
GLN
136
A
ARG
137
n
137
ARG
137
A
ILE
138
n
138
ILE
138
A
GLY
139
n
139
GLY
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
TYR
142
n
142
TYR
142
A
PHE
143
n
143
PHE
143
A
GLU
144
n
144
GLU
144
A
ASP
145
n
145
ASP
145
A
PHE
146
n
146
PHE
146
A
GLU
147
n
147
GLU
147
A
LYS
148
n
148
LYS
148
A
ARG
149
n
149
ARG
149
A
ILE
150
n
150
ILE
150
A
PRO
151
n
151
PRO
151
A
ARG
152
n
152
ARG
152
A
GLU
153
n
153
GLU
153
A
GLU
154
n
154
GLU
154
A
MET
155
n
155
MET
155
A
LEU
156
n
156
LEU
156
A
GLN
157
n
157
GLN
157
A
MET
158
n
158
MET
158
A
GLN
159
n
159
GLN
159
A
ASP
160
n
160
ASP
160
A
ILE
161
n
161
ILE
161
A
VAL
162
n
162
VAL
162
A
LEU
163
n
163
LEU
163
A
ASN
164
n
164
ASN
164
A
GLU
165
n
165
GLU
165
A
VAL
166
n
166
VAL
166
A
LYS
167
n
167
LYS
167
A
LYS
168
n
168
LYS
168
A
LEU
169
n
169
LEU
169
A
ASP
170
n
170
ASP
170
A
PRO
171
n
171
PRO
171
A
GLU
172
n
172
GLU
172
A
TYR
173
n
173
TYR
173
A
ILE
174
n
174
ILE
174
A
ALA
175
n
175
ALA
175
A
THR
176
n
176
THR
176
A
VAL
177
n
177
VAL
177
A
CYS
178
n
178
CYS
178
A
GLY
179
n
179
GLY
179
A
SER
180
n
180
SER
180
A
PHE
181
n
181
PHE
181
A
ARG
182
n
182
ARG
182
A
ARG
183
n
183
ARG
183
A
GLY
184
n
184
GLY
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
SER
187
n
187
SER
187
A
SER
188
n
188
SER
188
A
GLY
189
n
189
GLY
189
A
ASP
190
n
190
ASP
190
A
MET
191
n
191
MET
191
A
ASP
192
n
192
ASP
192
A
VAL
193
n
193
VAL
193
A
LEU
194
n
194
LEU
194
A
LEU
195
n
195
LEU
195
A
THR
196
n
196
THR
196
A
HIS
197
n
197
HIS
197
A
PRO
198
n
198
PRO
198
A
ASN
199
n
199
ASN
199
A
PHE
200
n
200
PHE
200
A
THR
201
n
201
THR
201
A
SER
202
n
202
SER
202
A
GLU
203
n
203
GLU
203
A
SER
204
n
204
SER
204
A
SER
205
n
205
SER
205
A
LYS
206
n
206
LYS
206
A
GLN
207
n
207
GLN
207
A
PRO
208
n
208
PRO
208
A
LYS
209
n
209
LYS
209
A
LEU
210
n
210
LEU
210
A
LEU
211
n
211
LEU
211
A
HIS
212
n
212
HIS
212
A
ARG
213
n
213
ARG
213
A
VAL
214
n
214
VAL
214
A
VAL
215
n
215
VAL
215
A
GLU
216
n
216
GLU
216
A
GLN
217
n
217
GLN
217
A
LEU
218
n
218
LEU
218
A
GLN
219
n
219
GLN
219
A
LYS
220
n
220
LYS
220
A
VAL
221
n
221
VAL
221
A
ARG
222
n
222
ARG
222
A
PHE
223
n
223
PHE
223
A
ILE
224
n
224
ILE
224
A
THR
225
n
225
THR
225
A
ASP
226
n
226
ASP
226
A
THR
227
n
227
THR
227
A
LEU
228
n
228
LEU
228
A
SER
229
n
229
SER
229
A
LYS
230
n
230
LYS
230
A
GLY
231
n
231
GLY
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
LYS
234
n
234
LYS
234
A
PHE
235
n
235
PHE
235
A
MET
236
n
236
MET
236
A
GLY
237
n
237
GLY
237
A
VAL
238
n
238
VAL
238
A
CYS
239
n
239
CYS
239
A
GLN
240
n
240
GLN
240
A
LEU
241
n
241
LEU
241
A
PRO
242
n
242
PRO
242
A
SER
243
n
243
SER
243
A
GLU
244
n
244
GLU
244
A
ASN
245
n
245
ASN
245
A
n
246
246
A
n
247
247
A
n
248
248
A
GLU
249
n
249
GLU
249
A
TYR
250
n
250
TYR
250
A
PRO
251
n
251
PRO
251
A
HIS
252
n
252
HIS
252
A
ARG
253
n
253
ARG
253
A
ARG
254
n
254
ARG
254
A
ILE
255
n
255
ILE
255
A
ASP
256
n
256
ASP
256
A
ILE
257
n
257
ILE
257
A
ARG
258
n
258
ARG
258
A
LEU
259
n
259
LEU
259
A
ILE
260
n
260
ILE
260
A
PRO
261
n
261
PRO
261
A
LYS
262
n
262
LYS
262
A
ASP
263
n
263
ASP
263
A
GLN
264
n
264
GLN
264
A
TYR
265
n
265
TYR
265
A
TYR
266
n
266
TYR
266
A
CYS
267
n
267
CYS
267
A
GLY
268
n
268
GLY
268
A
VAL
269
n
269
VAL
269
A
LEU
270
n
270
LEU
270
A
TYR
271
n
271
TYR
271
A
PHE
272
n
272
PHE
272
A
THR
273
n
273
THR
273
A
GLY
274
n
274
GLY
274
A
SER
275
n
275
SER
275
A
ASP
276
n
276
ASP
276
A
ILE
277
n
277
ILE
277
A
PHE
278
n
278
PHE
278
A
ASN
279
n
279
ASN
279
A
LYS
280
n
280
LYS
280
A
ASN
281
n
281
ASN
281
A
MET
282
n
282
MET
282
A
ARG
283
n
283
ARG
283
A
ALA
284
n
284
ALA
284
A
HIS
285
n
285
HIS
285
A
ALA
286
n
286
ALA
286
A
LEU
287
n
287
LEU
287
A
GLU
288
n
288
GLU
288
A
LYS
289
n
289
LYS
289
A
GLY
290
n
290
GLY
290
A
PHE
291
n
291
PHE
291
A
THR
292
n
292
THR
292
A
ILE
293
n
293
ILE
293
A
ASN
294
n
294
ASN
294
A
GLU
295
n
295
GLU
295
A
TYR
296
n
296
TYR
296
A
THR
297
n
297
THR
297
A
ILE
298
n
298
ILE
298
A
ARG
299
n
299
ARG
299
A
PRO
300
n
300
PRO
300
A
LEU
301
n
301
LEU
301
A
GLY
302
n
302
GLY
302
A
VAL
303
n
303
VAL
303
A
THR
304
n
304
THR
304
A
GLY
305
n
305
GLY
305
A
VAL
306
n
306
VAL
306
A
ALA
307
n
307
ALA
307
A
GLY
308
n
308
GLY
308
A
GLU
309
n
309
GLU
309
A
PRO
310
n
310
PRO
310
A
LEU
311
n
311
LEU
311
A
PRO
312
n
312
PRO
312
A
VAL
313
n
313
VAL
313
A
ASP
314
n
314
ASP
314
A
SER
315
n
315
SER
315
A
GLU
316
n
316
GLU
316
A
GLN
317
n
317
GLN
317
A
ASP
318
n
318
ASP
318
A
ILE
319
n
319
ILE
319
A
PHE
320
n
320
PHE
320
A
ASP
321
n
321
ASP
321
A
TYR
322
n
322
TYR
322
A
ILE
323
n
323
ILE
323
A
GLN
324
n
324
GLN
324
A
TRP
325
n
325
TRP
325
A
ARG
326
n
326
ARG
326
A
TYR
327
n
327
TYR
327
A
ARG
328
n
328
ARG
328
A
GLU
329
n
329
GLU
329
A
PRO
330
n
330
PRO
330
A
LYS
331
n
331
LYS
331
A
ASP
332
n
332
ASP
332
A
ARG
333
n
333
ARG
333
A
SER
334
n
334
SER
334
A
GLU
335
n
335
GLU
335
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
176
A
O
THR
176
A
N
LEU
194
A
N
LEU
194
A
N
VAL
193
A
N
VAL
193
A
O
ASP
256
A
O
ASP
256
A
O
ILE
257
A
O
ILE
257
A
N
PHE
235
A
N
PHE
235
A
O
VAL
238
A
O
VAL
238
A
N
ASP
226
A
N
ASP
226
A
O
THR
292
A
O
THR
292
A
N
ARG
299
A
N
ARG
299
1
A
CG
ASN
12
A
CG
ASN
12
1
Y
1
A
OD1
ASN
12
A
OD1
ASN
12
1
Y
1
A
ND2
ASN
12
A
ND2
ASN
12
1
Y
1
A
CG1
ILE
15
A
CG1
ILE
15
1
Y
1
A
CG2
ILE
15
A
CG2
ILE
15
1
Y
1
A
CD1
ILE
15
A
CD1
ILE
15
1
Y
1
A
OG1
THR
16
A
OG1
THR
16
1
Y
1
A
CG2
THR
16
A
CG2
THR
16
1
Y
1
A
CG
ASP
17
A
CG
ASP
17
1
Y
1
A
OD1
ASP
17
A
OD1
ASP
17
1
Y
1
A
OD2
ASP
17
A
OD2
ASP
17
1
Y
1
A
CG
MET
18
A
CG
MET
18
1
Y
1
A
SD
MET
18
A
SD
MET
18
1
Y
1
A
CE
MET
18
A
CE
MET
18
1
Y
1
A
CG
LEU
19
A
CG
LEU
19
1
Y
1
A
CD1
LEU
19
A
CD1
LEU
19
1
Y
1
A
CD2
LEU
19
A
CD2
LEU
19
1
Y
1
A
CG1
VAL
20
A
CG1
VAL
20
1
Y
1
A
CG2
VAL
20
A
CG2
VAL
20
1
Y
1
A
CG
GLU
21
A
CG
GLU
21
1
Y
1
A
CD
GLU
21
A
CD
GLU
21
1
Y
1
A
OE1
GLU
21
A
OE1
GLU
21
1
Y
1
A
OE2
GLU
21
A
OE2
GLU
21
1
Y
1
A
CG
LEU
22
A
CG
LEU
22
1
Y
1
A
CD1
LEU
22
A
CD1
LEU
22
1
Y
1
A
CD2
LEU
22
A
CD2
LEU
22
1
Y
1
A
CG
ASN
24
A
CG
ASN
24
1
Y
1
A
OD1
ASN
24
A
OD1
ASN
24
1
Y
1
A
ND2
ASN
24
A
ND2
ASN
24
1
Y
1
A
CG
PHE
25
A
CG
PHE
25
1
Y
1
A
CD1
PHE
25
A
CD1
PHE
25
1
Y
1
A
CD2
PHE
25
A
CD2
PHE
25
1
Y
1
A
CE1
PHE
25
A
CE1
PHE
25
1
Y
1
A
CE2
PHE
25
A
CE2
PHE
25
1
Y
1
A
CZ
PHE
25
A
CZ
PHE
25
1
Y
1
A
CG
GLU
58
A
CG
GLU
58
1
Y
1
A
CD
GLU
58
A
CD
GLU
58
1
Y
1
A
OE1
GLU
58
A
OE1
GLU
58
1
Y
1
A
OE2
GLU
58
A
OE2
GLU
58
1
Y
1
A
CG
LYS
60
A
CG
LYS
60
1
Y
1
A
CD
LYS
60
A
CD
LYS
60
1
Y
1
A
CE
LYS
60
A
CE
LYS
60
1
Y
1
A
NZ
LYS
60
A
NZ
LYS
60
1
Y
1
A
CG
LYS
61
A
CG
LYS
61
1
Y
1
A
CD
LYS
61
A
CD
LYS
61
1
Y
1
A
CE
LYS
61
A
CE
LYS
61
1
Y
1
A
NZ
LYS
61
A
NZ
LYS
61
1
Y
1
A
CG
LEU
62
A
CG
LEU
62
1
Y
1
A
CD1
LEU
62
A
CD1
LEU
62
1
Y
1
A
CD2
LEU
62
A
CD2
LEU
62
1
Y
1
A
CG
PRO
63
A
CG
PRO
63
1
Y
1
A
CD
PRO
63
A
CD
PRO
63
1
Y
1
A
CG
GLU
71
A
CG
GLU
71
1
Y
1
A
CD
GLU
71
A
CD
GLU
71
1
Y
1
A
OE1
GLU
71
A
OE1
GLU
71
1
Y
1
A
OE2
GLU
71
A
OE2
GLU
71
1
Y
1
A
CG
LYS
72
A
CG
LYS
72
1
Y
1
A
CD
LYS
72
A
CD
LYS
72
1
Y
1
A
CE
LYS
72
A
CE
LYS
72
1
Y
1
A
NZ
LYS
72
A
NZ
LYS
72
1
Y
1
A
CG1
ILE
73
A
CG1
ILE
73
1
Y
1
A
CG2
ILE
73
A
CG2
ILE
73
1
Y
1
A
CD1
ILE
73
A
CD1
ILE
73
1
Y
1
A
CG
ASP
74
A
CG
ASP
74
1
Y
1
A
OD1
ASP
74
A
OD1
ASP
74
1
Y
1
A
OD2
ASP
74
A
OD2
ASP
74
1
Y
1
A
CG
GLU
75
A
CG
GLU
75
1
Y
1
A
CD
GLU
75
A
CD
GLU
75
1
Y
1
A
OE1
GLU
75
A
OE1
GLU
75
1
Y
1
A
OE2
GLU
75
A
OE2
GLU
75
1
Y
1
A
CG
LEU
77
A
CG
LEU
77
1
Y
1
A
CD1
LEU
77
A
CD1
LEU
77
1
Y
1
A
CD2
LEU
77
A
CD2
LEU
77
1
Y
1
A
CG
LYS
81
A
CG
LYS
81
1
Y
1
A
CD
LYS
81
A
CD
LYS
81
1
Y
1
A
CE
LYS
81
A
CE
LYS
81
1
Y
1
A
NZ
LYS
81
A
NZ
LYS
81
1
Y
1
A
CG
LEU
82
A
CG
LEU
82
1
Y
1
A
CD1
LEU
82
A
CD1
LEU
82
1
Y
1
A
CD2
LEU
82
A
CD2
LEU
82
1
Y
1
A
CG
ARG
83
A
CG
ARG
83
1
Y
1
A
CD
ARG
83
A
CD
ARG
83
1
Y
1
A
NE
ARG
83
A
NE
ARG
83
1
Y
1
A
CZ
ARG
83
A
CZ
ARG
83
1
Y
1
A
NH1
ARG
83
A
NH1
ARG
83
1
Y
1
A
NH2
ARG
83
A
NH2
ARG
83
1
Y
1
A
CG
LYS
84
A
CG
LYS
84
1
Y
1
A
CD
LYS
84
A
CD
LYS
84
1
Y
1
A
CE
LYS
84
A
CE
LYS
84
1
Y
1
A
NZ
LYS
84
A
NZ
LYS
84
1
Y
1
A
CG
LEU
85
A
CG
LEU
85
1
Y
1
A
CD1
LEU
85
A
CD1
LEU
85
1
Y
1
A
CD2
LEU
85
A
CD2
LEU
85
1
Y
1
A
CG
GLU
86
A
CG
GLU
86
1
Y
1
A
CD
GLU
86
A
CD
GLU
86
1
Y
1
A
OE1
GLU
86
A
OE1
GLU
86
1
Y
1
A
OE2
GLU
86
A
OE2
GLU
86
1
Y
1
A
CG
LYS
87
A
CG
LYS
87
1
Y
1
A
CD
LYS
87
A
CD
LYS
87
1
Y
1
A
CE
LYS
87
A
CE
LYS
87
1
Y
1
A
NZ
LYS
87
A
NZ
LYS
87
1
Y
1
A
CG1
ILE
88
A
CG1
ILE
88
1
Y
1
A
CG2
ILE
88
A
CG2
ILE
88
1
Y
1
A
CD1
ILE
88
A
CD1
ILE
88
1
Y
1
A
CG
ARG
89
A
CG
ARG
89
1
Y
1
A
CD
ARG
89
A
CD
ARG
89
1
Y
1
A
NE
ARG
89
A
NE
ARG
89
1
Y
1
A
CZ
ARG
89
A
CZ
ARG
89
1
Y
1
A
NH1
ARG
89
A
NH1
ARG
89
1
Y
1
A
NH2
ARG
89
A
NH2
ARG
89
1
Y
1
A
CG
ARG
90
A
CG
ARG
90
1
Y
1
A
CD
ARG
90
A
CD
ARG
90
1
Y
1
A
NE
ARG
90
A
NE
ARG
90
1
Y
1
A
CZ
ARG
90
A
CZ
ARG
90
1
Y
1
A
NH1
ARG
90
A
NH1
ARG
90
1
Y
1
A
NH2
ARG
90
A
NH2
ARG
90
1
Y
1
A
CG
ASP
91
A
CG
ASP
91
1
Y
1
A
OD1
ASP
91
A
OD1
ASP
91
1
Y
1
A
OD2
ASP
91
A
OD2
ASP
91
1
Y
1
A
CG
ASP
92
A
CG
ASP
92
1
Y
1
A
OD1
ASP
92
A
OD1
ASP
92
1
Y
1
A
OD2
ASP
92
A
OD2
ASP
92
1
Y
1
A
OG
SER
109
A
OG
SER
109
1
Y
1
A
CG1
ILE
119
A
CG1
ILE
119
1
Y
1
A
CG2
ILE
119
A
CG2
ILE
119
1
Y
1
A
CD1
ILE
119
A
CD1
ILE
119
1
Y
1
A
CG
GLU
123
A
CG
GLU
123
1
Y
1
A
CD
GLU
123
A
CD
GLU
123
1
Y
1
A
OE1
GLU
123
A
OE1
GLU
123
1
Y
1
A
OE2
GLU
123
A
OE2
GLU
123
1
Y
1
A
CG
LYS
131
A
CG
LYS
131
1
Y
1
A
CD
LYS
131
A
CD
LYS
131
1
Y
1
A
CE
LYS
131
A
CE
LYS
131
1
Y
1
A
NZ
LYS
131
A
NZ
LYS
131
1
Y
1
A
CG
ARG
149
A
CG
ARG
149
1
Y
1
A
CD
ARG
149
A
CD
ARG
149
1
Y
1
A
NE
ARG
149
A
NE
ARG
149
1
Y
1
A
CZ
ARG
149
A
CZ
ARG
149
1
Y
1
A
NH1
ARG
149
A
NH1
ARG
149
1
Y
1
A
NH2
ARG
149
A
NH2
ARG
149
1
Y
1
A
CG
GLN
159
A
CG
GLN
159
1
Y
1
A
CD
GLN
159
A
CD
GLN
159
1
Y
1
A
OE1
GLN
159
A
OE1
GLN
159
1
Y
1
A
NE2
GLN
159
A
NE2
GLN
159
1
Y
1
A
OG
SER
243
A
OG
SER
243
1
Y
1
A
CG
GLU
244
A
CG
GLU
244
1
Y
1
A
CD
GLU
244
A
CD
GLU
244
1
Y
1
A
OE1
GLU
244
A
OE1
GLU
244
1
Y
1
A
OE2
GLU
244
A
OE2
GLU
244
1
Y
1
A
CG
ASN
245
A
CG
ASN
245
1
Y
1
A
OD1
ASN
245
A
OD1
ASN
245
1
Y
1
A
ND2
ASN
245
A
ND2
ASN
245
1
Y
1
A
CG
LYS
280
A
CG
LYS
280
1
Y
1
A
CD
LYS
280
A
CD
LYS
280
1
Y
1
A
CE
LYS
280
A
CE
LYS
280
1
Y
1
A
NZ
LYS
280
A
NZ
LYS
280
1
Y
1
A
CG1
ILE
293
A
CG1
ILE
293
1
Y
1
A
CG2
ILE
293
A
CG2
ILE
293
1
Y
1
A
CD1
ILE
293
A
CD1
ILE
293
1
Y
1
A
CG1
VAL
303
A
CG1
VAL
303
1
Y
1
A
CG2
VAL
303
A
CG2
VAL
303
1
Y
1
A
OG1
THR
304
A
OG1
THR
304
1
Y
1
A
CG2
THR
304
A
CG2
THR
304
1
Y
1
A
CG1
VAL
306
A
CG1
VAL
306
1
Y
1
A
CG2
VAL
306
A
CG2
VAL
306
1
Y
1
A
CG
ARG
326
A
CG
ARG
326
1
Y
1
A
CD
ARG
326
A
CD
ARG
326
1
Y
1
A
NE
ARG
326
A
NE
ARG
326
1
Y
1
A
CZ
ARG
326
A
CZ
ARG
326
1
Y
1
A
NH1
ARG
326
A
NH1
ARG
326
1
Y
1
A
NH2
ARG
326
A
NH2
ARG
326
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
ARG
4
A
ARG
4
1
Y
1
A
LYS
5
A
LYS
5
1
Y
1
A
ALA
6
A
ALA
6
1
Y
1
A
PRO
7
A
PRO
7
1
Y
1
A
GLN
8
A
GLN
8
1
Y
1
A
GLU
9
A
GLU
9
1
Y
1
A
THR
10
A
THR
10
1
Y
1
A
LEU
11
A
LEU
11
1
Y
1
A
GLU
26
A
GLU
26
1
Y
1
A
LYS
27
A
LYS
27
1
Y
1
A
ASN
28
A
ASN
28
1
Y
1
A
VAL
29
A
VAL
29
1
Y
1
A
SER
30
A
SER
30
1
Y
1
A
GLN
31
A
GLN
31
1
Y
1
A
ALA
32
A
ALA
32
1
Y
1
A
ILE
33
A
ILE
33
1
Y
1
A
HIS
34
A
HIS
34
1
Y
1
A
LYS
35
A
LYS
35
1
Y
1
A
TYR
36
A
TYR
36
1
Y
1
A
ASN
37
A
ASN
37
1
Y
1
A
ALA
38
A
ALA
38
1
Y
1
A
TYR
39
A
TYR
39
1
Y
1
A
ARG
40
A
ARG
40
1
Y
1
A
LYS
41
A
LYS
41
1
Y
1
A
ALA
42
A
ALA
42
1
Y
1
A
ALA
43
A
ALA
43
1
Y
1
A
SER
44
A
SER
44
1
Y
1
A
VAL
45
A
VAL
45
1
Y
1
A
ILE
46
A
ILE
46
1
Y
1
A
ALA
47
A
ALA
47
1
Y
1
A
LYS
48
A
LYS
48
1
Y
1
A
TYR
49
A
TYR
49
1
Y
1
A
PRO
50
A
PRO
50
1
Y
1
A
HIS
51
A
HIS
51
1
Y
1
A
LYS
52
A
LYS
52
1
Y
1
A
ILE
53
A
ILE
53
1
Y
1
A
LYS
54
A
LYS
54
1
Y
1
A
SER
55
A
SER
55
1
Y
1
A
GLY
64
A
GLY
64
1
Y
1
A
VAL
65
A
VAL
65
1
Y
1
A
GLY
66
A
GLY
66
1
Y
1
A
THR
67
A
THR
67
1
Y
1
A
LYS
68
A
LYS
68
1
Y
1
A
ILE
69
A
ILE
69
1
Y
1
A
ALA
70
A
ALA
70
1
Y
1
A
ASP
246
A
ASP
246
1
Y
1
A
GLU
247
A
GLU
247
1
Y
1
A
ASN
248
A
ASN
248
1
Y
1
A
CA
ARG
222
PLANAR
1
A
A
ILE
ASP
73
74
121.72
1
A
A
C
N
LYS
ILE
87
88
1.77
1
7.64
1.20
103.30
110.94
A
A
A
N
CA
CB
PRO
PRO
PRO
63
63
63
N
1
-17.57
2.50
121.70
104.13
A
A
A
C
N
CA
ILE
ASP
ASP
73
74
74
Y
1
-12.94
1.80
110.60
97.66
A
A
A
N
CA
CB
ASP
ASP
ASP
74
74
74
N
1
18.11
2.70
111.00
129.11
A
A
A
N
CA
C
ASP
ASP
ASP
74
74
74
N
1
-5.66
0.90
118.30
112.64
A
A
A
CB
CG
OD1
ASP
ASP
ASP
124
124
124
N
1
-3.47
0.50
120.30
116.83
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
126
126
126
N
1
-6.51
0.90
118.30
111.79
A
A
A
CB
CG
OD1
ASP
ASP
ASP
130
130
130
N
1
5.95
0.90
118.30
124.25
A
A
A
CB
CG
OD2
ASP
ASP
ASP
130
130
130
N
1
3.05
0.50
120.30
123.35
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
137
137
137
N
1
-7.13
0.90
118.30
111.17
A
A
A
CB
CG
OD1
ASP
ASP
ASP
145
145
145
N
1
5.61
0.90
118.30
123.91
A
A
A
CB
CG
OD2
ASP
ASP
ASP
145
145
145
N
1
9.82
1.50
119.30
129.12
A
A
A
C
N
CA
ILE
PRO
PRO
150
151
151
Y
1
-36.09
2.10
128.40
92.31
A
A
A
C
N
CD
ILE
PRO
PRO
150
151
151
Y
1
-6.53
0.90
118.30
111.77
A
A
A
CB
CG
OD1
ASP
ASP
ASP
160
160
160
N
1
-32.70
2.10
128.40
95.70
A
A
A
C
N
CD
ASP
PRO
PRO
170
171
171
Y
1
5.89
0.90
118.30
124.19
A
A
A
CB
CG
OD1
ASP
ASP
ASP
192
192
192
N
1
-6.14
0.90
118.30
112.16
A
A
A
CB
CG
OD2
ASP
ASP
ASP
192
192
192
N
1
12.63
2.00
110.40
123.03
A
A
A
CB
CA
C
ARG
ARG
ARG
222
222
222
N
1
3.02
0.50
120.30
123.32
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
222
222
222
N
1
-33.26
2.10
128.40
95.14
A
A
A
C
N
CD
LEU
PRO
PRO
241
242
242
Y
1
-15.97
2.10
128.40
112.43
A
A
A
C
N
CD
TYR
PRO
PRO
250
251
251
Y
1
3.05
0.50
120.30
123.35
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
253
253
253
N
1
-8.67
0.90
118.30
109.63
A
A
A
CB
CG
OD1
ASP
ASP
ASP
256
256
256
N
1
-13.77
1.90
110.10
96.33
A
A
A
CB
CA
C
SER
SER
SER
275
275
275
N
1
-7.52
0.90
118.30
110.78
A
A
A
CB
CG
OD2
ASP
ASP
ASP
276
276
276
N
1
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
299
299
299
N
1
-6.82
0.90
118.30
111.48
A
A
A
CB
CG
OD1
ASP
ASP
ASP
318
318
318
N
1
5.69
0.90
118.30
123.99
A
A
A
CB
CG
OD2
ASP
ASP
ASP
318
318
318
N
1
A
A
N
CA
ASP
ASP
74
74
0.160
0.020
1.459
1.619
N
1
A
A
CD
OE1
GLU
GLU
117
117
0.068
0.011
1.252
1.320
N
1
A
A
CD
OE1
GLU
GLU
144
144
0.070
0.011
1.252
1.322
N
1
A
A
CD
OE1
GLU
GLU
147
147
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE2
GLU
GLU
153
153
0.072
0.011
1.252
1.324
N
1
A
A
CD
OE1
GLU
GLU
165
165
0.071
0.011
1.252
1.323
N
1
A
A
CD
OE2
GLU
GLU
172
172
0.068
0.011
1.252
1.320
N
1
A
A
CD
OE1
GLU
GLU
186
186
0.067
0.011
1.252
1.319
N
1
A
A
CD
OE1
GLU
GLU
203
203
0.071
0.011
1.252
1.323
N
1
A
A
CD
OE1
GLU
GLU
232
232
0.069
0.011
1.252
1.321
N
1
A
A
CD
OE1
GLU
GLU
249
249
0.072
0.011
1.252
1.324
N
1
A
A
CD
OE1
GLU
GLU
288
288
0.081
0.011
1.252
1.333
N
1
A
A
CD
OE1
GLU
GLU
295
295
0.070
0.011
1.252
1.322
N
1
A
A
CD
OE1
GLU
GLU
329
329
0.071
0.011
1.252
1.323
N
1
A
A
N
OE2
THR
GLU
227
335
2.06
1_555
2_656
1
A
A
CA
OE2
ASP
GLU
226
335
2.11
1_555
2_656
1
A
ILE
73
179.84
176.74
1
A
ASP
74
-50.45
14.76
1
A
THR
79
111.77
134.10
1
A
LYS
81
95.80
-139.46
1
A
GLU
86
42.87
8.82
1
A
ALA
110
-33.87
-82.04
1
A
GLU
117
-74.59
49.07
1
A
LYS
120
-173.53
-31.20
1
A
ASN
128
-53.61
31.71
1
A
ASP
130
-29.12
-38.77
1
A
LYS
131
-67.76
0.25
1
A
HIS
135
-56.75
-96.80
1
A
GLN
136
-36.99
-25.77
1
A
PHE
143
8.48
-47.80
1
A
ARG
152
-56.70
1.70
1
A
ASP
160
-59.91
-80.91
1
A
ILE
161
-35.55
-33.56
1
A
CYS
178
-128.84
-138.77
1
A
PHE
181
-39.19
-34.33
1
A
ARG
183
-48.25
-13.62
1
A
ALA
185
-24.14
145.44
1
A
SER
188
-92.17
-142.79
1
A
ASP
192
-168.06
91.52
1
A
LYS
206
-170.31
80.87
1
A
GLN
207
-157.55
36.62
1
A
LEU
210
-51.96
-70.57
1
A
GLN
217
-48.40
-71.93
1
A
LEU
218
-40.66
-18.76
1
A
VAL
221
-64.61
0.04
1
A
LEU
228
-71.53
-81.68
1
A
SER
229
-114.82
-160.24
1
A
LYS
230
177.95
135.51
1
A
GLU
232
55.41
-63.44
1
A
CYS
239
-97.18
-159.22
1
A
GLN
240
164.50
118.81
1
A
SER
243
-111.02
-169.27
1
A
GLU
244
167.63
13.45
1
A
TYR
265
-39.27
-73.37
1
A
SER
275
-73.39
-167.36
1
A
ASP
276
-54.98
-76.54
1
A
ALA
284
-56.82
-79.95
1
A
LEU
301
-67.47
-142.96
1
A
THR
304
111.49
4.74
1
A
ALA
307
177.16
166.56
1
A
GLU
309
146.47
120.88
1
A
ASP
314
-64.10
-72.45
1
A
GLN
317
-46.17
-15.07
1
A
GLN
324
36.32
106.76
1
A
TYR
327
-57.43
81.71
1
A
ARG
328
-67.92
82.76
0.1990000
2.9
20.
4069
1
0.0
2.9
20.
0
2158
30
0
2128
0.019
3.0
refinement
TNT
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA; EVIDENCE FOR A COMMON POLYMERASE MECHANISM
1
N
N
2
N
N
A
ASN
12
A
ASN
12
HELX_P
A
PHE
25
A
PHE
25
1
1
14
A
ASP
74
A
ASP
74
HELX_P
A
THR
79
A
THR
79
1
2
6
A
LYS
81
A
LYS
81
HELX_P
A
GLU
86
A
GLU
86
1
3
6
A
THR
93
A
THR
93
HELX_P
A
ARG
102
A
ARG
102
1
4
10
A
GLY
107
A
GLY
107
HELX_P
A
GLU
117
A
GLU
117
1
5
11
A
THR
121
A
THR
121
HELX_P
A
ASN
128
A
ASN
128
1
6
8
A
GLU
129
A
GLU
129
HELX_P
A
LEU
132
A
LEU
132
5
7
4
A
ASN
133
A
ASN
133
HELX_P
A
TYR
142
A
TYR
142
1
8
10
A
GLU
144
A
GLU
144
HELX_P
A
LYS
148
A
LYS
148
5
9
5
A
PRO
151
A
PRO
151
HELX_P
A
ASP
170
A
ASP
170
1
10
20
A
CYS
178
A
CYS
178
HELX_P
A
GLY
184
A
GLY
184
1
11
7
A
PRO
208
A
PRO
208
HELX_P
A
VAL
221
A
VAL
221
1
12
14
A
GLN
264
A
GLN
264
HELX_P
A
GLY
274
A
GLY
274
1
13
11
A
ILE
277
A
ILE
277
HELX_P
A
LYS
289
A
LYS
289
1
14
13
A
GLU
316
A
GLU
316
HELX_P
A
ILE
323
A
ILE
323
1
15
8
A
GLU
329
A
GLU
329
HELX_P
A
ARG
333
A
ARG
333
5
16
5
NUCLEOTIDYLTRANSFERASE
NUCLEOTIDYLTRANSFERASE
A
GLY
274
A
GLY
274
1
A
SER
275
A
SER
275
0.24
DPOB_RAT
UNP
1
1
P06766
SKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGK
LRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDI
VLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQL
PSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFD
YIQWRYREPKDRSE
1
334
1BPE
2
335
P06766
A
1
2
335
1
GLN
conflict
ARG
90
1BPE
A
P06766
UNP
89
90
5
2
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
174
A
ILE
174
A
VAL
177
A
VAL
177
A
VAL
193
A
VAL
193
A
THR
196
A
THR
196
A
ARG
254
A
ARG
254
A
LEU
259
A
LEU
259
A
LYS
234
A
LYS
234
A
VAL
238
A
VAL
238
A
ASP
226
A
ASP
226
A
THR
227
A
THR
227
A
PHE
291
A
PHE
291
A
THR
292
A
THR
292
A
ARG
299
A
ARG
299
A
PRO
300
A
PRO
300
BINDING SITE FOR RESIDUE DTP A 338
A
DTP
338
Software
4
A
SER
180
A
SER
180
4
1_555
A
SER
188
A
SER
188
4
1_555
A
GLY
189
A
GLY
189
4
1_555
A
ASP
190
A
ASP
190
4
1_555
4
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