1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wang, H.
Kurochkin, A.V.
Pang, Y.
Hu, W.
Flynn, G.C.
Zuiderweg, E.R.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
37
7929
7940
10.1021/bi9800855
9609686
NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: a preview of chaperone-protein interaction.
1998
10.2210/pdb1bpr/pdb
pdb_00001bpr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
20940.344
DNAK
SUBSTRATE BINDING DOMAIN
1
man
polymer
no
no
RGSHHHHHHGSIEGRVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD
NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFE
ELVQTRNQGDHLLHSTRKQVEEAGDKLPADD
RGSHHHHHHGSIEGRVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD
NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFE
ELVQTRNQGDHLLHSTRKQVEEAGDKLPADD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
XL-1 BLUE
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
PQE30
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1999-03-02
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
Y
BNL
1998-08-11
REL
THIS IS THE MEAN STRUCTURE
TOTAL ENERGY
100
1
HNCA
HN(CA)HA
HN(CO)CA
HA(CACO)NH
CP H(C)CCH-TOCSY
CP (H)CCH-TOCSY
CP (H)C(CCACO)NH-TOCSY
15N-RESOLVED NOESY-HSQC
13C RESOLVED NOESY-HMQC
4D 13C RESOLVED HMQC-NOESY-HSQC
HNHA-J
50 mM INORGANIC PHOSPHATE
7.0
1
atm
298
K
REFINEMENT DETAILS CAN BE FOUND IN THE REFERENCE CITED ABOVE
DISTANCE GEOMETRY AND RESTRAINED MOLECULAR DYNAMICS WITH SIMULATED ANNEALING
H2O AND D2O
MSI
refinement
Discover
structure solution
BIOSYM
500
Bruker
AMX500
600
Bruker
AMX600
n
1
371
A
n
2
372
A
n
3
373
A
n
4
374
A
n
5
375
A
n
6
376
A
n
7
377
A
n
8
378
A
n
9
379
A
n
10
380
A
SER
381
n
11
SER
381
A
ILE
382
n
12
ILE
382
A
GLU
383
n
13
GLU
383
A
GLY
384
n
14
GLY
384
A
ARG
385
n
15
ARG
385
A
VAL
386
n
16
VAL
386
A
LYS
387
n
17
LYS
387
A
ASP
388
n
18
ASP
388
A
VAL
389
n
19
VAL
389
A
LEU
390
n
20
LEU
390
A
LEU
391
n
21
LEU
391
A
LEU
392
n
22
LEU
392
A
ASP
393
n
23
ASP
393
A
VAL
394
n
24
VAL
394
A
THR
395
n
25
THR
395
A
PRO
396
n
26
PRO
396
A
LEU
397
n
27
LEU
397
A
SER
398
n
28
SER
398
A
LEU
399
n
29
LEU
399
A
GLY
400
n
30
GLY
400
A
ILE
401
n
31
ILE
401
A
GLU
402
n
32
GLU
402
A
THR
403
n
33
THR
403
A
MET
404
n
34
MET
404
A
GLY
405
n
35
GLY
405
A
GLY
406
n
36
GLY
406
A
VAL
407
n
37
VAL
407
A
MET
408
n
38
MET
408
A
THR
409
n
39
THR
409
A
THR
410
n
40
THR
410
A
LEU
411
n
41
LEU
411
A
ILE
412
n
42
ILE
412
A
ALA
413
n
43
ALA
413
A
LYS
414
n
44
LYS
414
A
ASN
415
n
45
ASN
415
A
THR
416
n
46
THR
416
A
THR
417
n
47
THR
417
A
ILE
418
n
48
ILE
418
A
PRO
419
n
49
PRO
419
A
THR
420
n
50
THR
420
A
LYS
421
n
51
LYS
421
A
HIS
422
n
52
HIS
422
A
SER
423
n
53
SER
423
A
GLN
424
n
54
GLN
424
A
VAL
425
n
55
VAL
425
A
PHE
426
n
56
PHE
426
A
SER
427
n
57
SER
427
A
THR
428
n
58
THR
428
A
ALA
429
n
59
ALA
429
A
GLU
430
n
60
GLU
430
A
ASP
431
n
61
ASP
431
A
ASN
432
n
62
ASN
432
A
GLN
433
n
63
GLN
433
A
SER
434
n
64
SER
434
A
ALA
435
n
65
ALA
435
A
VAL
436
n
66
VAL
436
A
THR
437
n
67
THR
437
A
ILE
438
n
68
ILE
438
A
HIS
439
n
69
HIS
439
A
VAL
440
n
70
VAL
440
A
LEU
441
n
71
LEU
441
A
GLN
442
n
72
GLN
442
A
GLY
443
n
73
GLY
443
A
GLU
444
n
74
GLU
444
A
ARG
445
n
75
ARG
445
A
LYS
446
n
76
LYS
446
A
ARG
447
n
77
ARG
447
A
ALA
448
n
78
ALA
448
A
ALA
449
n
79
ALA
449
A
ASP
450
n
80
ASP
450
A
ASN
451
n
81
ASN
451
A
LYS
452
n
82
LYS
452
A
SER
453
n
83
SER
453
A
LEU
454
n
84
LEU
454
A
GLY
455
n
85
GLY
455
A
GLN
456
n
86
GLN
456
A
PHE
457
n
87
PHE
457
A
ASN
458
n
88
ASN
458
A
LEU
459
n
89
LEU
459
A
ASP
460
n
90
ASP
460
A
GLY
461
n
91
GLY
461
A
ILE
462
n
92
ILE
462
A
ASN
463
n
93
ASN
463
A
PRO
464
n
94
PRO
464
A
ALA
465
n
95
ALA
465
A
PRO
466
n
96
PRO
466
A
ARG
467
n
97
ARG
467
A
GLY
468
n
98
GLY
468
A
MET
469
n
99
MET
469
A
PRO
470
n
100
PRO
470
A
GLN
471
n
101
GLN
471
A
ILE
472
n
102
ILE
472
A
GLU
473
n
103
GLU
473
A
VAL
474
n
104
VAL
474
A
THR
475
n
105
THR
475
A
PHE
476
n
106
PHE
476
A
ASP
477
n
107
ASP
477
A
ILE
478
n
108
ILE
478
A
ASP
479
n
109
ASP
479
A
ALA
480
n
110
ALA
480
A
ASP
481
n
111
ASP
481
A
GLY
482
n
112
GLY
482
A
ILE
483
n
113
ILE
483
A
LEU
484
n
114
LEU
484
A
HIS
485
n
115
HIS
485
A
VAL
486
n
116
VAL
486
A
SER
487
n
117
SER
487
A
ALA
488
n
118
ALA
488
A
LYS
489
n
119
LYS
489
A
ASP
490
n
120
ASP
490
A
LYS
491
n
121
LYS
491
A
ASN
492
n
122
ASN
492
A
SER
493
n
123
SER
493
A
GLY
494
n
124
GLY
494
A
LYS
495
n
125
LYS
495
A
GLU
496
n
126
GLU
496
A
GLN
497
n
127
GLN
497
A
LYS
498
n
128
LYS
498
A
ILE
499
n
129
ILE
499
A
THR
500
n
130
THR
500
A
ILE
501
n
131
ILE
501
A
LYS
502
n
132
LYS
502
A
ALA
503
n
133
ALA
503
A
SER
504
n
134
SER
504
A
SER
505
n
135
SER
505
A
GLY
506
n
136
GLY
506
A
LEU
507
n
137
LEU
507
A
ASN
508
n
138
ASN
508
A
GLU
509
n
139
GLU
509
A
ASP
510
n
140
ASP
510
A
GLU
511
n
141
GLU
511
A
ILE
512
n
142
ILE
512
A
GLN
513
n
143
GLN
513
A
LYS
514
n
144
LYS
514
A
MET
515
n
145
MET
515
A
VAL
516
n
146
VAL
516
A
ARG
517
n
147
ARG
517
A
ASP
518
n
148
ASP
518
A
ALA
519
n
149
ALA
519
A
GLU
520
n
150
GLU
520
A
ALA
521
n
151
ALA
521
A
ASN
522
n
152
ASN
522
A
ALA
523
n
153
ALA
523
A
GLU
524
n
154
GLU
524
A
ALA
525
n
155
ALA
525
A
ASP
526
n
156
ASP
526
A
ARG
527
n
157
ARG
527
A
LYS
528
n
158
LYS
528
A
PHE
529
n
159
PHE
529
A
GLU
530
n
160
GLU
530
A
GLU
531
n
161
GLU
531
A
LEU
532
n
162
LEU
532
A
VAL
533
n
163
VAL
533
A
GLN
534
n
164
GLN
534
A
THR
535
n
165
THR
535
A
ARG
536
n
166
ARG
536
A
ASN
537
n
167
ASN
537
A
GLN
538
n
168
GLN
538
A
GLY
539
n
169
GLY
539
A
ASP
540
n
170
ASP
540
A
HIS
541
n
171
HIS
541
A
LEU
542
n
172
LEU
542
A
LEU
543
n
173
LEU
543
A
HIS
544
n
174
HIS
544
A
SER
545
n
175
SER
545
A
THR
546
n
176
THR
546
A
ARG
547
n
177
ARG
547
A
LYS
548
n
178
LYS
548
A
GLN
549
n
179
GLN
549
A
VAL
550
n
180
VAL
550
A
GLU
551
n
181
GLU
551
A
GLU
552
n
182
GLU
552
A
ALA
553
n
183
ALA
553
A
n
184
554
A
n
185
555
A
n
186
556
A
n
187
557
A
n
188
558
A
n
189
559
A
n
190
560
A
n
191
561
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
407
A
O
VAL
37
A
N
THR
403
A
N
THR
33
A
O
GLY
400
A
O
GLY
30
A
N
LEU
441
A
N
LEU
71
A
O
VAL
440
A
O
VAL
70
A
N
LEU
454
A
N
LEU
84
A
O
THR
420
A
O
THR
50
A
N
ILE
478
A
N
ILE
108
A
O
GLU
473
A
O
GLU
103
A
N
LYS
489
A
N
LYS
119
A
O
LEU
484
A
O
LEU
114
A
N
ILE
501
A
N
ILE
131
A
O
VAL
436
A
O
VAL
66
A
N
LEU
459
A
N
LEU
89
1
A
ARG
371
A
ARG
1
1
Y
1
A
GLY
372
A
GLY
2
1
Y
1
A
SER
373
A
SER
3
1
Y
1
A
HIS
374
A
HIS
4
1
Y
1
A
HIS
375
A
HIS
5
1
Y
1
A
HIS
376
A
HIS
6
1
Y
1
A
HIS
377
A
HIS
7
1
Y
1
A
HIS
378
A
HIS
8
1
Y
1
A
HIS
379
A
HIS
9
1
Y
1
A
GLY
380
A
GLY
10
1
Y
1
A
GLY
554
A
GLY
184
1
Y
1
A
ASP
555
A
ASP
185
1
Y
1
A
LYS
556
A
LYS
186
1
Y
1
A
LEU
557
A
LEU
187
1
Y
1
A
PRO
558
A
PRO
188
1
Y
1
A
ALA
559
A
ALA
189
1
Y
1
A
ASP
560
A
ASP
190
1
Y
1
A
ASP
561
A
ASP
191
1
Y
1
A
A
O
HB3
GLN
LYS
442
452
1.18
1
A
A
H
H
GLN
THR
534
535
1.31
1
A
A
HZ1
H
LYS
LEU
387
507
1.32
1
A
A
H
H
LEU
SER
397
398
1.34
1
A
A
O
CB
ASP
LYS
510
514
2.17
1
A
A
O
CB
GLN
LYS
442
452
2.19
1
A
A
THR
PRO
395
396
-139.68
1
9.44
1.30
111.50
120.94
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
422
422
422
N
1
9.40
1.30
111.50
120.90
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
439
439
439
N
1
9.50
1.30
111.50
121.00
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
485
485
485
N
1
-18.58
2.70
111.00
92.42
A
A
A
N
CA
C
GLU
GLU
GLU
511
511
511
N
1
9.44
1.30
111.50
120.94
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
541
541
541
N
1
9.47
1.30
111.50
120.97
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
544
544
544
N
1
A
GLU
383
36.42
98.90
1
A
LEU
390
-136.80
-52.59
1
A
LEU
397
-163.24
-9.22
1
A
SER
398
82.48
125.69
1
A
MET
404
-43.97
93.42
1
A
ASN
415
93.87
-9.67
1
A
ASP
431
56.80
91.99
1
A
SER
434
-159.32
-24.25
1
A
ALA
435
-167.29
114.68
1
A
ILE
438
-106.91
53.88
1
A
GLU
444
-103.48
-86.60
1
A
ARG
445
-158.38
-103.85
1
A
ASP
450
-99.40
40.94
1
A
ASN
451
-101.05
50.28
1
A
GLN
456
-175.41
77.19
1
A
ILE
462
-119.57
56.29
1
A
ASN
463
64.33
162.44
1
A
ALA
465
-152.90
82.30
1
A
ARG
467
58.30
106.48
1
A
MET
469
-138.94
-61.19
1
A
LYS
491
-102.35
40.56
1
A
SER
493
-155.40
13.77
1
A
ALA
503
-164.14
33.82
1
A
SER
505
-81.04
-143.43
1
A
ARG
517
-71.28
-72.81
1
A
GLN
534
119.44
9.29
1
A
THR
535
54.74
113.05
1
A
ARG
536
-160.36
-104.63
1
A
ASN
537
140.18
-178.15
1
A
GLN
538
69.69
-95.70
1
A
HIS
541
78.48
-64.33
1
A
LEU
543
-169.09
102.56
1
A
SER
545
-160.09
108.91
1
A
GLN
549
-162.14
74.98
NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, MINIMIZED AVERAGE STRUCTURE
1
Y
N
A
GLU
509
A
GLU
139
HELX_P
A
VAL
533
A
VAL
163
1
1
25
MOLECULAR CHAPERONE
MOLECULAR CHAPERONE, HSP70, PEPTIDE BINDING, PROTEIN FOLDING
A
ILE
418
A
ILE
48
1
A
PRO
419
A
PRO
49
18.79
A
MET
469
A
MET
99
1
A
PRO
470
A
PRO
100
-5.18
DNAK_ECOLI
UNP
1
1
P0A6Y8
GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE
VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV
EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLK
VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGI
ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDAD
GILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADD
KTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDKK
379
560
1BPR
380
561
P0A6Y8
A
1
10
191
1
VAL
conflict
SER
381
1BPR
A
P0A6Y8
UNP
380
11
1
LEU
conflict
ILE
382
1BPR
A
P0A6Y8
UNP
381
12
1
THR
conflict
GLU
383
1BPR
A
P0A6Y8
UNP
382
13
1
ASP
conflict
ARG
385
1BPR
A
P0A6Y8
UNP
384
15
4
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
407
A
VAL
37
A
THR
409
A
THR
39
A
LEU
399
A
LEU
29
A
THR
403
A
THR
33
A
VAL
440
A
VAL
70
A
GLN
442
A
GLN
72
A
LYS
452
A
LYS
82
A
LEU
454
A
LEU
84
A
THR
420
A
THR
50
A
PHE
426
A
PHE
56
A
ILE
472
A
ILE
102
A
ILE
478
A
ILE
108
A
LEU
484
A
LEU
114
A
ASP
490
A
ASP
120
A
LYS
495
A
LYS
125
A
ILE
501
A
ILE
131
A
ALA
435
A
ALA
65
A
ILE
438
A
ILE
68
A
PHE
457
A
PHE
87
A
ASP
460
A
ASP
90
1
P 1