1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wang, H. Kurochkin, A.V. Pang, Y. Hu, W. Flynn, G.C. Zuiderweg, E.R.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 37 7929 7940 10.1021/bi9800855 9609686 NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: a preview of chaperone-protein interaction. 1998 10.2210/pdb1bpr/pdb pdb_00001bpr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 20940.344 DNAK SUBSTRATE BINDING DOMAIN 1 man polymer no no RGSHHHHHHGSIEGRVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFE ELVQTRNQGDHLLHSTRKQVEEAGDKLPADD RGSHHHHHHGSIEGRVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFE ELVQTRNQGDHLLHSTRKQVEEAGDKLPADD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia XL-1 BLUE Escherichia sample 562 Escherichia coli 562 Escherichia coli PQE30 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1999-03-02 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_ref_seq_dif.details Y BNL 1998-08-11 REL THIS IS THE MEAN STRUCTURE TOTAL ENERGY 100 1 HNCA HN(CA)HA HN(CO)CA HA(CACO)NH CP H(C)CCH-TOCSY CP (H)CCH-TOCSY CP (H)C(CCACO)NH-TOCSY 15N-RESOLVED NOESY-HSQC 13C RESOLVED NOESY-HMQC 4D 13C RESOLVED HMQC-NOESY-HSQC HNHA-J 50 mM INORGANIC PHOSPHATE 7.0 1 atm 298 K REFINEMENT DETAILS CAN BE FOUND IN THE REFERENCE CITED ABOVE DISTANCE GEOMETRY AND RESTRAINED MOLECULAR DYNAMICS WITH SIMULATED ANNEALING H2O AND D2O MSI refinement Discover structure solution BIOSYM 500 Bruker AMX500 600 Bruker AMX600 n 1 371 A n 2 372 A n 3 373 A n 4 374 A n 5 375 A n 6 376 A n 7 377 A n 8 378 A n 9 379 A n 10 380 A SER 381 n 11 SER 381 A ILE 382 n 12 ILE 382 A GLU 383 n 13 GLU 383 A GLY 384 n 14 GLY 384 A ARG 385 n 15 ARG 385 A VAL 386 n 16 VAL 386 A LYS 387 n 17 LYS 387 A ASP 388 n 18 ASP 388 A VAL 389 n 19 VAL 389 A LEU 390 n 20 LEU 390 A LEU 391 n 21 LEU 391 A LEU 392 n 22 LEU 392 A ASP 393 n 23 ASP 393 A VAL 394 n 24 VAL 394 A THR 395 n 25 THR 395 A PRO 396 n 26 PRO 396 A LEU 397 n 27 LEU 397 A SER 398 n 28 SER 398 A LEU 399 n 29 LEU 399 A GLY 400 n 30 GLY 400 A ILE 401 n 31 ILE 401 A GLU 402 n 32 GLU 402 A THR 403 n 33 THR 403 A MET 404 n 34 MET 404 A GLY 405 n 35 GLY 405 A GLY 406 n 36 GLY 406 A VAL 407 n 37 VAL 407 A MET 408 n 38 MET 408 A THR 409 n 39 THR 409 A THR 410 n 40 THR 410 A LEU 411 n 41 LEU 411 A ILE 412 n 42 ILE 412 A ALA 413 n 43 ALA 413 A LYS 414 n 44 LYS 414 A ASN 415 n 45 ASN 415 A THR 416 n 46 THR 416 A THR 417 n 47 THR 417 A ILE 418 n 48 ILE 418 A PRO 419 n 49 PRO 419 A THR 420 n 50 THR 420 A LYS 421 n 51 LYS 421 A HIS 422 n 52 HIS 422 A SER 423 n 53 SER 423 A GLN 424 n 54 GLN 424 A VAL 425 n 55 VAL 425 A PHE 426 n 56 PHE 426 A SER 427 n 57 SER 427 A THR 428 n 58 THR 428 A ALA 429 n 59 ALA 429 A GLU 430 n 60 GLU 430 A ASP 431 n 61 ASP 431 A ASN 432 n 62 ASN 432 A GLN 433 n 63 GLN 433 A SER 434 n 64 SER 434 A ALA 435 n 65 ALA 435 A VAL 436 n 66 VAL 436 A THR 437 n 67 THR 437 A ILE 438 n 68 ILE 438 A HIS 439 n 69 HIS 439 A VAL 440 n 70 VAL 440 A LEU 441 n 71 LEU 441 A GLN 442 n 72 GLN 442 A GLY 443 n 73 GLY 443 A GLU 444 n 74 GLU 444 A ARG 445 n 75 ARG 445 A LYS 446 n 76 LYS 446 A ARG 447 n 77 ARG 447 A ALA 448 n 78 ALA 448 A ALA 449 n 79 ALA 449 A ASP 450 n 80 ASP 450 A ASN 451 n 81 ASN 451 A LYS 452 n 82 LYS 452 A SER 453 n 83 SER 453 A LEU 454 n 84 LEU 454 A GLY 455 n 85 GLY 455 A GLN 456 n 86 GLN 456 A PHE 457 n 87 PHE 457 A ASN 458 n 88 ASN 458 A LEU 459 n 89 LEU 459 A ASP 460 n 90 ASP 460 A GLY 461 n 91 GLY 461 A ILE 462 n 92 ILE 462 A ASN 463 n 93 ASN 463 A PRO 464 n 94 PRO 464 A ALA 465 n 95 ALA 465 A PRO 466 n 96 PRO 466 A ARG 467 n 97 ARG 467 A GLY 468 n 98 GLY 468 A MET 469 n 99 MET 469 A PRO 470 n 100 PRO 470 A GLN 471 n 101 GLN 471 A ILE 472 n 102 ILE 472 A GLU 473 n 103 GLU 473 A VAL 474 n 104 VAL 474 A THR 475 n 105 THR 475 A PHE 476 n 106 PHE 476 A ASP 477 n 107 ASP 477 A ILE 478 n 108 ILE 478 A ASP 479 n 109 ASP 479 A ALA 480 n 110 ALA 480 A ASP 481 n 111 ASP 481 A GLY 482 n 112 GLY 482 A ILE 483 n 113 ILE 483 A LEU 484 n 114 LEU 484 A HIS 485 n 115 HIS 485 A VAL 486 n 116 VAL 486 A SER 487 n 117 SER 487 A ALA 488 n 118 ALA 488 A LYS 489 n 119 LYS 489 A ASP 490 n 120 ASP 490 A LYS 491 n 121 LYS 491 A ASN 492 n 122 ASN 492 A SER 493 n 123 SER 493 A GLY 494 n 124 GLY 494 A LYS 495 n 125 LYS 495 A GLU 496 n 126 GLU 496 A GLN 497 n 127 GLN 497 A LYS 498 n 128 LYS 498 A ILE 499 n 129 ILE 499 A THR 500 n 130 THR 500 A ILE 501 n 131 ILE 501 A LYS 502 n 132 LYS 502 A ALA 503 n 133 ALA 503 A SER 504 n 134 SER 504 A SER 505 n 135 SER 505 A GLY 506 n 136 GLY 506 A LEU 507 n 137 LEU 507 A ASN 508 n 138 ASN 508 A GLU 509 n 139 GLU 509 A ASP 510 n 140 ASP 510 A GLU 511 n 141 GLU 511 A ILE 512 n 142 ILE 512 A GLN 513 n 143 GLN 513 A LYS 514 n 144 LYS 514 A MET 515 n 145 MET 515 A VAL 516 n 146 VAL 516 A ARG 517 n 147 ARG 517 A ASP 518 n 148 ASP 518 A ALA 519 n 149 ALA 519 A GLU 520 n 150 GLU 520 A ALA 521 n 151 ALA 521 A ASN 522 n 152 ASN 522 A ALA 523 n 153 ALA 523 A GLU 524 n 154 GLU 524 A ALA 525 n 155 ALA 525 A ASP 526 n 156 ASP 526 A ARG 527 n 157 ARG 527 A LYS 528 n 158 LYS 528 A PHE 529 n 159 PHE 529 A GLU 530 n 160 GLU 530 A GLU 531 n 161 GLU 531 A LEU 532 n 162 LEU 532 A VAL 533 n 163 VAL 533 A GLN 534 n 164 GLN 534 A THR 535 n 165 THR 535 A ARG 536 n 166 ARG 536 A ASN 537 n 167 ASN 537 A GLN 538 n 168 GLN 538 A GLY 539 n 169 GLY 539 A ASP 540 n 170 ASP 540 A HIS 541 n 171 HIS 541 A LEU 542 n 172 LEU 542 A LEU 543 n 173 LEU 543 A HIS 544 n 174 HIS 544 A SER 545 n 175 SER 545 A THR 546 n 176 THR 546 A ARG 547 n 177 ARG 547 A LYS 548 n 178 LYS 548 A GLN 549 n 179 GLN 549 A VAL 550 n 180 VAL 550 A GLU 551 n 181 GLU 551 A GLU 552 n 182 GLU 552 A ALA 553 n 183 ALA 553 A n 184 554 A n 185 555 A n 186 556 A n 187 557 A n 188 558 A n 189 559 A n 190 560 A n 191 561 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 407 A O VAL 37 A N THR 403 A N THR 33 A O GLY 400 A O GLY 30 A N LEU 441 A N LEU 71 A O VAL 440 A O VAL 70 A N LEU 454 A N LEU 84 A O THR 420 A O THR 50 A N ILE 478 A N ILE 108 A O GLU 473 A O GLU 103 A N LYS 489 A N LYS 119 A O LEU 484 A O LEU 114 A N ILE 501 A N ILE 131 A O VAL 436 A O VAL 66 A N LEU 459 A N LEU 89 1 A ARG 371 A ARG 1 1 Y 1 A GLY 372 A GLY 2 1 Y 1 A SER 373 A SER 3 1 Y 1 A HIS 374 A HIS 4 1 Y 1 A HIS 375 A HIS 5 1 Y 1 A HIS 376 A HIS 6 1 Y 1 A HIS 377 A HIS 7 1 Y 1 A HIS 378 A HIS 8 1 Y 1 A HIS 379 A HIS 9 1 Y 1 A GLY 380 A GLY 10 1 Y 1 A GLY 554 A GLY 184 1 Y 1 A ASP 555 A ASP 185 1 Y 1 A LYS 556 A LYS 186 1 Y 1 A LEU 557 A LEU 187 1 Y 1 A PRO 558 A PRO 188 1 Y 1 A ALA 559 A ALA 189 1 Y 1 A ASP 560 A ASP 190 1 Y 1 A ASP 561 A ASP 191 1 Y 1 A A O HB3 GLN LYS 442 452 1.18 1 A A H H GLN THR 534 535 1.31 1 A A HZ1 H LYS LEU 387 507 1.32 1 A A H H LEU SER 397 398 1.34 1 A A O CB ASP LYS 510 514 2.17 1 A A O CB GLN LYS 442 452 2.19 1 A A THR PRO 395 396 -139.68 1 9.44 1.30 111.50 120.94 A A A ND1 CE1 NE2 HIS HIS HIS 422 422 422 N 1 9.40 1.30 111.50 120.90 A A A ND1 CE1 NE2 HIS HIS HIS 439 439 439 N 1 9.50 1.30 111.50 121.00 A A A ND1 CE1 NE2 HIS HIS HIS 485 485 485 N 1 -18.58 2.70 111.00 92.42 A A A N CA C GLU GLU GLU 511 511 511 N 1 9.44 1.30 111.50 120.94 A A A ND1 CE1 NE2 HIS HIS HIS 541 541 541 N 1 9.47 1.30 111.50 120.97 A A A ND1 CE1 NE2 HIS HIS HIS 544 544 544 N 1 A GLU 383 36.42 98.90 1 A LEU 390 -136.80 -52.59 1 A LEU 397 -163.24 -9.22 1 A SER 398 82.48 125.69 1 A MET 404 -43.97 93.42 1 A ASN 415 93.87 -9.67 1 A ASP 431 56.80 91.99 1 A SER 434 -159.32 -24.25 1 A ALA 435 -167.29 114.68 1 A ILE 438 -106.91 53.88 1 A GLU 444 -103.48 -86.60 1 A ARG 445 -158.38 -103.85 1 A ASP 450 -99.40 40.94 1 A ASN 451 -101.05 50.28 1 A GLN 456 -175.41 77.19 1 A ILE 462 -119.57 56.29 1 A ASN 463 64.33 162.44 1 A ALA 465 -152.90 82.30 1 A ARG 467 58.30 106.48 1 A MET 469 -138.94 -61.19 1 A LYS 491 -102.35 40.56 1 A SER 493 -155.40 13.77 1 A ALA 503 -164.14 33.82 1 A SER 505 -81.04 -143.43 1 A ARG 517 -71.28 -72.81 1 A GLN 534 119.44 9.29 1 A THR 535 54.74 113.05 1 A ARG 536 -160.36 -104.63 1 A ASN 537 140.18 -178.15 1 A GLN 538 69.69 -95.70 1 A HIS 541 78.48 -64.33 1 A LEU 543 -169.09 102.56 1 A SER 545 -160.09 108.91 1 A GLN 549 -162.14 74.98 NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, MINIMIZED AVERAGE STRUCTURE 1 Y N A GLU 509 A GLU 139 HELX_P A VAL 533 A VAL 163 1 1 25 MOLECULAR CHAPERONE MOLECULAR CHAPERONE, HSP70, PEPTIDE BINDING, PROTEIN FOLDING A ILE 418 A ILE 48 1 A PRO 419 A PRO 49 18.79 A MET 469 A MET 99 1 A PRO 470 A PRO 100 -5.18 DNAK_ECOLI UNP 1 1 P0A6Y8 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLK VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGI ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDAD GILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADD KTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDKK 379 560 1BPR 380 561 P0A6Y8 A 1 10 191 1 VAL conflict SER 381 1BPR A P0A6Y8 UNP 380 11 1 LEU conflict ILE 382 1BPR A P0A6Y8 UNP 381 12 1 THR conflict GLU 383 1BPR A P0A6Y8 UNP 382 13 1 ASP conflict ARG 385 1BPR A P0A6Y8 UNP 384 15 4 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 407 A VAL 37 A THR 409 A THR 39 A LEU 399 A LEU 29 A THR 403 A THR 33 A VAL 440 A VAL 70 A GLN 442 A GLN 72 A LYS 452 A LYS 82 A LEU 454 A LEU 84 A THR 420 A THR 50 A PHE 426 A PHE 56 A ILE 472 A ILE 102 A ILE 478 A ILE 108 A LEU 484 A LEU 114 A ASP 490 A ASP 120 A LYS 495 A LYS 125 A ILE 501 A ILE 131 A ALA 435 A ALA 65 A ILE 438 A ILE 68 A PHE 457 A PHE 87 A ASP 460 A ASP 90 1 P 1