0.018951 0.000000 0.005560 0.000000 0.012595 0.000000 0.000000 0.000000 0.019079 0.00000 0.00000 0.00000 Sawaya, M.R. Prasad, R. Wilson, S.H. Kraut, J. Pelletier, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 106.35 90.00 52.767 79.395 54.622 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 36 11205 11215 10.1021/bi9703812 9287163 Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism. 1997 US Biochemistry BICHAW 0033 0006-2960 35 12778 Characterization of the Metal Ion Binding Helix-Hairpin-Helix Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis 1996 US Biochemistry BICHAW 0033 0006-2960 35 12762 A Structural Basis for Metal Ion Mutagenicity and Nucleotide Selectivity in Human DNA Polymerase Beta 1996 US Biochemistry BICHAW 0033 0006-2960 35 12742 Crystal Structures of Human DNA Polymerase Beta Complexed with DNA: Implications for Catalytic Mechanism, Processivity, and Fidelity 1996 US Science SCIEAS 0038 0036-8075 264 1930 Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism 1994 US Science SCIEAS 0038 0036-8075 264 1891 Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP 1994 10.2210/pdb1bpx/pdb pdb_00001bpx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.00 1 MIRRORS IMAGE PLATE 1996-11-14 MARRESEARCH SI(111) CRYSTAL SINGLE WAVELENGTH M x-ray 1 1.0 BL7-1 SSRL SYNCHROTRON SSRL BEAMLINE BL7-1 4869.157 DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') 1 syn polymer 3061.004 DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3') 1 syn polymer 1536.035 DNA (5'-D(*GP*TP*CP*GP*G)-3') 1 syn polymer 38241.672 PROTEIN (DNA POLYMERASE BETA) 2.7.7.7 1 man polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 81 nat water POL-BETA, BETA-POL EC 2.7.7.7 no no (DC)(DC)(DG)(DA)(DC)(DG)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC) CCGACGGCGCATCAGC T polydeoxyribonucleotide no no (DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DC) GCTGATGCGC P polydeoxyribonucleotide no no (DG)(DT)(DC)(DG)(DG) GTCGG D polydeoxyribonucleotide no no MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample NUCLEUS 9606 Homo sapiens 562 Escherichia coli 1 2.10 41.4000 VAPOR DIFFUSION 7.0 PROTEIN-DNA COMPLEX WAS CRYSTALLIZED USING A RESERVOIR CONTAINING 13.8% PEG 3350, 360 MM SODIUM ACETATE, AND 50 MM IMIDAZOLE, PH 7.0., VAPOR DIFFUSION -3.348 1 19 T 1 D 5 -1.068 T_DC1:DG5_D 1 -1.877 -0.739 0.125 -0.231 -3.440 1 19 T 2 D 4 -0.959 T_DC2:DG4_D 2 -0.710 0.881 0.128 -0.492 -1.799 1 19 T 3 D 3 -1.916 T_DG3:DC3_D 3 -2.542 -0.263 -0.003 -0.243 0.597 1 20 T 4 D 2 -6.071 T_DA4:DT2_D 4 -0.563 0.220 0.059 -0.110 3.975 1 19 T 5 D 1 -0.827 T_DC5:DG1_D 5 -2.258 -0.019 -0.132 -0.144 -4.657 1 19 T 7 P 10 -6.447 T_DG7:DC10_P 6 -1.044 -0.526 -0.219 -0.319 0.301 1 19 T 8 P 9 -0.925 T_DC8:DG9_P 7 -1.106 -0.219 -0.067 -0.032 2.495 1 19 T 9 P 8 -1.631 T_DG9:DC8_P 8 -1.445 0.178 0.084 -0.182 2.012 1 19 T 10 P 7 -0.530 T_DC10:DG7_P 9 -0.322 0.311 0.043 -0.146 2.067 1 20 T 11 P 6 -3.475 T_DA11:DT6_P 10 -3.767 0.504 0.062 -0.113 0.538 1 20 T 12 P 5 -3.400 T_DT12:DA5_P 11 -1.964 -0.103 0.042 0.006 -0.283 1 19 T 13 P 4 -0.470 T_DC13:DG4_P 12 -1.523 0.259 0.022 -0.178 1.506 1 20 T 14 P 3 -3.604 T_DA14:DT3_P 13 -1.157 -0.399 0.078 -0.221 -1.236 1 19 T 15 P 2 0.775 T_DG15:DC2_P 14 -2.253 -0.351 -0.075 -0.191 -0.937 1 19 T 16 P 1 3.137 T_DC16:DG1_P 15 -2.012 -0.087 0.096 -0.178 3.426 46.319 T T 1 2 1.146 D D 5 4 3.394 0.901 0.817 0.341 TT_DC1DC2:DG4DG5_DD 1 1.729 -2.199 46.280 0.354 -0.886 3.256 26.504 T T 2 3 4.553 D D 4 3 3.182 2.084 -0.864 0.351 TT_DC2DG3:DC3DG4_DD 2 -2.020 4.415 26.348 0.222 1.358 3.433 37.088 T T 3 4 -1.377 D D 3 2 3.408 -0.875 -0.495 -0.113 TT_DG3DA4:DT2DC3_DD 3 -2.239 3.522 37.013 -0.055 0.465 3.150 27.273 T T 4 5 6.038 D D 2 1 3.144 2.839 0.933 -0.425 TT_DA4DC5:DG1DT2_DD 4 2.276 -4.842 27.034 -1.586 -1.430 3.154 30.787 T T 7 8 -6.236 P P 10 9 3.207 -3.301 0.423 -0.075 TT_DG7DC8:DG9DC10_PP 5 -2.491 4.706 30.515 0.489 -1.272 3.548 40.482 T T 8 9 13.203 P P 9 8 3.465 9.063 -0.637 0.685 TT_DC8DG9:DC8DG9_PP 6 -1.260 1.836 39.476 -0.112 0.767 3.192 27.079 T T 9 10 3.667 P P 8 7 3.216 1.716 0.179 -0.325 TT_DG9DC10:DG7DC8_PP 7 0.503 -1.074 27.021 -1.120 -0.257 3.119 43.532 T T 10 11 12.844 P P 7 6 3.254 9.440 -0.071 -0.197 TT_DC10DA11:DT6DG7_PP 8 4.565 -6.211 42.310 -1.167 0.532 3.398 28.764 T T 11 12 -5.411 P P 6 5 3.344 -2.684 0.471 -0.582 TT_DA11DT12:DA5DT6_PP 9 1.006 -2.029 28.624 -0.551 -0.714 3.000 39.315 T T 12 13 2.411 P P 5 4 2.988 1.619 0.482 -0.477 TT_DT12DC13:DG4DA5_PP 10 4.142 -6.169 39.072 -0.886 -0.265 2.900 35.946 T T 13 14 16.812 P P 4 3 3.039 10.240 -0.741 -0.128 TT_DC13DA14:DT3DG4_PP 11 -0.773 1.269 34.494 -1.562 1.098 3.447 30.539 T T 14 15 -1.708 P P 3 2 3.470 -0.899 0.719 -0.487 TT_DA14DG15:DC2DT3_PP 12 -1.369 2.601 30.496 -0.736 -1.653 3.338 36.313 T T 15 16 7.528 P P 2 1 3.410 4.674 -0.048 -0.294 TT_DG15DC16:DG1DC2_PP 13 -3.224 5.193 35.881 -1.150 -0.390 database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 1997-06-16 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y NDB 1997-04-11 REL REL NA SODIUM ION HOH water THE 5'-TERMINUS OF G D 1 IS PHOSPHORYLATED. 1BPY PDB ENTRY 1BPY PDB experimental model NA 342 5 NA NA 342 D NA 341 5 NA NA 341 A HOH 514 6 HOH HOH 514 T HOH 516 6 HOH HOH 516 T HOH 518 6 HOH HOH 518 T HOH 519 6 HOH HOH 519 T HOH 521 6 HOH HOH 521 T HOH 525 6 HOH HOH 525 T HOH 526 6 HOH HOH 526 T HOH 527 6 HOH HOH 527 T HOH 530 6 HOH HOH 530 T HOH 531 6 HOH HOH 531 T HOH 540 6 HOH HOH 540 T HOH 544 6 HOH HOH 544 T HOH 546 6 HOH HOH 546 T HOH 549 6 HOH HOH 549 T HOH 554 6 HOH HOH 554 T HOH 559 6 HOH HOH 559 T HOH 564 6 HOH HOH 564 T HOH 566 6 HOH HOH 566 T HOH 571 6 HOH HOH 571 T HOH 581 6 HOH HOH 581 T HOH 582 6 HOH HOH 582 T HOH 501 6 HOH HOH 501 P HOH 506 6 HOH HOH 506 P HOH 508 6 HOH HOH 508 P HOH 509 6 HOH HOH 509 P HOH 513 6 HOH HOH 513 P HOH 515 6 HOH HOH 515 P HOH 528 6 HOH HOH 528 P HOH 529 6 HOH HOH 529 P HOH 560 6 HOH HOH 560 P HOH 565 6 HOH HOH 565 P HOH 572 6 HOH HOH 572 P HOH 573 6 HOH HOH 573 P HOH 578 6 HOH HOH 578 P HOH 580 6 HOH HOH 580 P HOH 535 6 HOH HOH 535 D HOH 536 6 HOH HOH 536 D HOH 537 6 HOH HOH 537 D HOH 570 6 HOH HOH 570 D HOH 575 6 HOH HOH 575 D HOH 576 6 HOH HOH 576 D HOH 500 6 HOH HOH 500 A HOH 502 6 HOH HOH 502 A HOH 504 6 HOH HOH 504 A HOH 505 6 HOH HOH 505 A HOH 507 6 HOH HOH 507 A HOH 510 6 HOH HOH 510 A HOH 511 6 HOH HOH 511 A HOH 512 6 HOH HOH 512 A HOH 517 6 HOH HOH 517 A HOH 520 6 HOH HOH 520 A HOH 522 6 HOH HOH 522 A HOH 523 6 HOH HOH 523 A HOH 524 6 HOH HOH 524 A HOH 532 6 HOH HOH 532 A HOH 533 6 HOH HOH 533 A HOH 534 6 HOH HOH 534 A HOH 538 6 HOH HOH 538 A HOH 539 6 HOH HOH 539 A HOH 541 6 HOH HOH 541 A HOH 542 6 HOH HOH 542 A HOH 543 6 HOH HOH 543 A HOH 545 6 HOH HOH 545 A HOH 547 6 HOH HOH 547 A HOH 548 6 HOH HOH 548 A HOH 550 6 HOH HOH 550 A HOH 551 6 HOH HOH 551 A HOH 552 6 HOH HOH 552 A HOH 553 6 HOH HOH 553 A HOH 555 6 HOH HOH 555 A HOH 557 6 HOH HOH 557 A HOH 558 6 HOH HOH 558 A HOH 561 6 HOH HOH 561 A HOH 562 6 HOH HOH 562 A HOH 563 6 HOH HOH 563 A HOH 567 6 HOH HOH 567 A HOH 568 6 HOH HOH 568 A HOH 569 6 HOH HOH 569 A HOH 574 6 HOH HOH 574 A HOH 577 6 HOH HOH 577 A HOH 579 6 HOH HOH 579 A C 1 n 1 DC 1 T C 2 n 2 DC 2 T G 3 n 3 DG 3 T A 4 n 4 DA 4 T C 5 n 5 DC 5 T G 6 n 6 DG 6 T G 7 n 7 DG 7 T C 8 n 8 DC 8 T G 9 n 9 DG 9 T C 10 n 10 DC 10 T A 11 n 11 DA 11 T T 12 n 12 DT 12 T C 13 n 13 DC 13 T A 14 n 14 DA 14 T G 15 n 15 DG 15 T C 16 n 16 DC 16 T G 1 n 1 DG 1 P C 2 n 2 DC 2 P T 3 n 3 DT 3 P G 4 n 4 DG 4 P A 5 n 5 DA 5 P T 6 n 6 DT 6 P G 7 n 7 DG 7 P C 8 n 8 DC 8 P G 9 n 9 DG 9 P C 10 n 10 DC 10 P G 1 n 1 DG 1 D T 2 n 2 DT 2 D C 3 n 3 DC 3 D G 4 n 4 DG 4 D G 5 n 5 DG 5 D n 1 1 A n 2 2 A n 3 3 A n 4 4 A LYS 5 n 5 LYS 5 A ALA 6 n 6 ALA 6 A PRO 7 n 7 PRO 7 A GLN 8 n 8 GLN 8 A GLU 9 n 9 GLU 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A ASN 12 n 12 ASN 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A ILE 15 n 15 ILE 15 A THR 16 n 16 THR 16 A ASP 17 n 17 ASP 17 A MET 18 n 18 MET 18 A LEU 19 n 19 LEU 19 A THR 20 n 20 THR 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A ALA 23 n 23 ALA 23 A ASN 24 n 24 ASN 24 A PHE 25 n 25 PHE 25 A GLU 26 n 26 GLU 26 A LYS 27 n 27 LYS 27 A ASN 28 n 28 ASN 28 A VAL 29 n 29 VAL 29 A SER 30 n 30 SER 30 A GLN 31 n 31 GLN 31 A ALA 32 n 32 ALA 32 A ILE 33 n 33 ILE 33 A HIS 34 n 34 HIS 34 A LYS 35 n 35 LYS 35 A TYR 36 n 36 TYR 36 A ASN 37 n 37 ASN 37 A ALA 38 n 38 ALA 38 A TYR 39 n 39 TYR 39 A ARG 40 n 40 ARG 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A ALA 43 n 43 ALA 43 A SER 44 n 44 SER 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A PRO 50 n 50 PRO 50 A HIS 51 n 51 HIS 51 A LYS 52 n 52 LYS 52 A ILE 53 n 53 ILE 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A GLY 56 n 56 GLY 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A LYS 61 n 61 LYS 61 A LEU 62 n 62 LEU 62 A PRO 63 n 63 PRO 63 A GLY 64 n 64 GLY 64 A VAL 65 n 65 VAL 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A LYS 68 n 68 LYS 68 A ILE 69 n 69 ILE 69 A ALA 70 n 70 ALA 70 A GLU 71 n 71 GLU 71 A LYS 72 n 72 LYS 72 A ILE 73 n 73 ILE 73 A ASP 74 n 74 ASP 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A LEU 77 n 77 LEU 77 A ALA 78 n 78 ALA 78 A THR 79 n 79 THR 79 A GLY 80 n 80 GLY 80 A LYS 81 n 81 LYS 81 A LEU 82 n 82 LEU 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A LEU 85 n 85 LEU 85 A GLU 86 n 86 GLU 86 A LYS 87 n 87 LYS 87 A ILE 88 n 88 ILE 88 A ARG 89 n 89 ARG 89 A GLN 90 n 90 GLN 90 A ASP 91 n 91 ASP 91 A ASP 92 n 92 ASP 92 A THR 93 n 93 THR 93 A SER 94 n 94 SER 94 A SER 95 n 95 SER 95 A SER 96 n 96 SER 96 A ILE 97 n 97 ILE 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A LEU 100 n 100 LEU 100 A THR 101 n 101 THR 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A SER 104 n 104 SER 104 A GLY 105 n 105 GLY 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A PRO 108 n 108 PRO 108 A SER 109 n 109 SER 109 A ALA 110 n 110 ALA 110 A ALA 111 n 111 ALA 111 A ARG 112 n 112 ARG 112 A LYS 113 n 113 LYS 113 A PHE 114 n 114 PHE 114 A VAL 115 n 115 VAL 115 A ASP 116 n 116 ASP 116 A GLU 117 n 117 GLU 117 A GLY 118 n 118 GLY 118 A ILE 119 n 119 ILE 119 A LYS 120 n 120 LYS 120 A THR 121 n 121 THR 121 A LEU 122 n 122 LEU 122 A GLU 123 n 123 GLU 123 A ASP 124 n 124 ASP 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A ASN 128 n 128 ASN 128 A GLU 129 n 129 GLU 129 A ASP 130 n 130 ASP 130 A LYS 131 n 131 LYS 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A HIS 134 n 134 HIS 134 A HIS 135 n 135 HIS 135 A GLN 136 n 136 GLN 136 A ARG 137 n 137 ARG 137 A ILE 138 n 138 ILE 138 A GLY 139 n 139 GLY 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A TYR 142 n 142 TYR 142 A PHE 143 n 143 PHE 143 A GLY 144 n 144 GLY 144 A ASP 145 n 145 ASP 145 A PHE 146 n 146 PHE 146 A GLU 147 n 147 GLU 147 A LYS 148 n 148 LYS 148 A ARG 149 n 149 ARG 149 A ILE 150 n 150 ILE 150 A PRO 151 n 151 PRO 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A GLU 154 n 154 GLU 154 A MET 155 n 155 MET 155 A LEU 156 n 156 LEU 156 A GLN 157 n 157 GLN 157 A MET 158 n 158 MET 158 A GLN 159 n 159 GLN 159 A ASP 160 n 160 ASP 160 A ILE 161 n 161 ILE 161 A VAL 162 n 162 VAL 162 A LEU 163 n 163 LEU 163 A ASN 164 n 164 ASN 164 A GLU 165 n 165 GLU 165 A VAL 166 n 166 VAL 166 A LYS 167 n 167 LYS 167 A LYS 168 n 168 LYS 168 A VAL 169 n 169 VAL 169 A ASP 170 n 170 ASP 170 A SER 171 n 171 SER 171 A GLU 172 n 172 GLU 172 A TYR 173 n 173 TYR 173 A ILE 174 n 174 ILE 174 A ALA 175 n 175 ALA 175 A THR 176 n 176 THR 176 A VAL 177 n 177 VAL 177 A CYS 178 n 178 CYS 178 A GLY 179 n 179 GLY 179 A SER 180 n 180 SER 180 A PHE 181 n 181 PHE 181 A ARG 182 n 182 ARG 182 A ARG 183 n 183 ARG 183 A GLY 184 n 184 GLY 184 A ALA 185 n 185 ALA 185 A GLU 186 n 186 GLU 186 A SER 187 n 187 SER 187 A SER 188 n 188 SER 188 A GLY 189 n 189 GLY 189 A ASP 190 n 190 ASP 190 A MET 191 n 191 MET 191 A ASP 192 n 192 ASP 192 A VAL 193 n 193 VAL 193 A LEU 194 n 194 LEU 194 A LEU 195 n 195 LEU 195 A THR 196 n 196 THR 196 A HIS 197 n 197 HIS 197 A PRO 198 n 198 PRO 198 A SER 199 n 199 SER 199 A PHE 200 n 200 PHE 200 A THR 201 n 201 THR 201 A SER 202 n 202 SER 202 A GLU 203 n 203 GLU 203 A SER 204 n 204 SER 204 A THR 205 n 205 THR 205 A LYS 206 n 206 LYS 206 A GLN 207 n 207 GLN 207 A PRO 208 n 208 PRO 208 A LYS 209 n 209 LYS 209 A LEU 210 n 210 LEU 210 A LEU 211 n 211 LEU 211 A HIS 212 n 212 HIS 212 A GLN 213 n 213 GLN 213 A VAL 214 n 214 VAL 214 A VAL 215 n 215 VAL 215 A GLU 216 n 216 GLU 216 A GLN 217 n 217 GLN 217 A LEU 218 n 218 LEU 218 A GLN 219 n 219 GLN 219 A LYS 220 n 220 LYS 220 A VAL 221 n 221 VAL 221 A HIS 222 n 222 HIS 222 A PHE 223 n 223 PHE 223 A ILE 224 n 224 ILE 224 A THR 225 n 225 THR 225 A ASP 226 n 226 ASP 226 A THR 227 n 227 THR 227 A LEU 228 n 228 LEU 228 A SER 229 n 229 SER 229 A LYS 230 n 230 LYS 230 A GLY 231 n 231 GLY 231 A GLU 232 n 232 GLU 232 A THR 233 n 233 THR 233 A LYS 234 n 234 LYS 234 A PHE 235 n 235 PHE 235 A MET 236 n 236 MET 236 A GLY 237 n 237 GLY 237 A VAL 238 n 238 VAL 238 A CYS 239 n 239 CYS 239 A GLN 240 n 240 GLN 240 A LEU 241 n 241 LEU 241 A PRO 242 n 242 PRO 242 A SER 243 n 243 SER 243 A LYS 244 n 244 LYS 244 A ASN 245 n 245 ASN 245 A ASP 246 n 246 ASP 246 A GLU 247 n 247 GLU 247 A LYS 248 n 248 LYS 248 A GLU 249 n 249 GLU 249 A TYR 250 n 250 TYR 250 A PRO 251 n 251 PRO 251 A HIS 252 n 252 HIS 252 A ARG 253 n 253 ARG 253 A ARG 254 n 254 ARG 254 A ILE 255 n 255 ILE 255 A ASP 256 n 256 ASP 256 A ILE 257 n 257 ILE 257 A ARG 258 n 258 ARG 258 A LEU 259 n 259 LEU 259 A ILE 260 n 260 ILE 260 A PRO 261 n 261 PRO 261 A LYS 262 n 262 LYS 262 A ASP 263 n 263 ASP 263 A GLN 264 n 264 GLN 264 A TYR 265 n 265 TYR 265 A TYR 266 n 266 TYR 266 A CYS 267 n 267 CYS 267 A GLY 268 n 268 GLY 268 A VAL 269 n 269 VAL 269 A LEU 270 n 270 LEU 270 A TYR 271 n 271 TYR 271 A PHE 272 n 272 PHE 272 A THR 273 n 273 THR 273 A GLY 274 n 274 GLY 274 A SER 275 n 275 SER 275 A ASP 276 n 276 ASP 276 A ILE 277 n 277 ILE 277 A PHE 278 n 278 PHE 278 A ASN 279 n 279 ASN 279 A LYS 280 n 280 LYS 280 A ASN 281 n 281 ASN 281 A MET 282 n 282 MET 282 A ARG 283 n 283 ARG 283 A ALA 284 n 284 ALA 284 A HIS 285 n 285 HIS 285 A ALA 286 n 286 ALA 286 A LEU 287 n 287 LEU 287 A GLU 288 n 288 GLU 288 A LYS 289 n 289 LYS 289 A GLY 290 n 290 GLY 290 A PHE 291 n 291 PHE 291 A THR 292 n 292 THR 292 A ILE 293 n 293 ILE 293 A ASN 294 n 294 ASN 294 A GLU 295 n 295 GLU 295 A TYR 296 n 296 TYR 296 A THR 297 n 297 THR 297 A ILE 298 n 298 ILE 298 A ARG 299 n 299 ARG 299 A PRO 300 n 300 PRO 300 A LEU 301 n 301 LEU 301 A GLY 302 n 302 GLY 302 A VAL 303 n 303 VAL 303 A THR 304 n 304 THR 304 A GLY 305 n 305 GLY 305 A VAL 306 n 306 VAL 306 A ALA 307 n 307 ALA 307 A GLY 308 n 308 GLY 308 A GLU 309 n 309 GLU 309 A PRO 310 n 310 PRO 310 A LEU 311 n 311 LEU 311 A PRO 312 n 312 PRO 312 A VAL 313 n 313 VAL 313 A ASP 314 n 314 ASP 314 A SER 315 n 315 SER 315 A GLU 316 n 316 GLU 316 A LYS 317 n 317 LYS 317 A ASP 318 n 318 ASP 318 A ILE 319 n 319 ILE 319 A PHE 320 n 320 PHE 320 A ASP 321 n 321 ASP 321 A TYR 322 n 322 TYR 322 A ILE 323 n 323 ILE 323 A GLN 324 n 324 GLN 324 A TRP 325 n 325 TRP 325 A LYS 326 n 326 LYS 326 A TYR 327 n 327 TYR 327 A ARG 328 n 328 ARG 328 A GLU 329 n 329 GLU 329 A PRO 330 n 330 PRO 330 A LYS 331 n 331 LYS 331 A ASP 332 n 332 ASP 332 A ARG 333 n 333 ARG 333 A SER 334 n 334 SER 334 A GLU 335 n 335 GLU 335 A 0.253 author_defined_assembly 4 tetrameric P DG 9 B OP1 DG 9 1_555 A NA 341 F NA NA 1_555 P HOH 501 H O HOH 1_555 91.8 P DG 9 B OP1 DG 9 1_555 A NA 341 F NA NA 1_555 A THR 101 D O THR 101 1_555 173.3 P HOH 501 H O HOH 1_555 A NA 341 F NA NA 1_555 A THR 101 D O THR 101 1_555 92.0 P DG 9 B OP1 DG 9 1_555 A NA 341 F NA NA 1_555 A VAL 103 D O VAL 103 1_555 91.0 P HOH 501 H O HOH 1_555 A NA 341 F NA NA 1_555 A VAL 103 D O VAL 103 1_555 161.4 A THR 101 D O THR 101 1_555 A NA 341 F NA NA 1_555 A VAL 103 D O VAL 103 1_555 87.1 P DG 9 B OP1 DG 9 1_555 A NA 341 F NA NA 1_555 A ILE 106 D O ILE 106 1_555 93.0 P HOH 501 H O HOH 1_555 A NA 341 F NA NA 1_555 A ILE 106 D O ILE 106 1_555 82.4 A THR 101 D O THR 101 1_555 A NA 341 F NA NA 1_555 A ILE 106 D O ILE 106 1_555 92.9 A VAL 103 D O VAL 103 1_555 A NA 341 F NA NA 1_555 A ILE 106 D O ILE 106 1_555 79.1 P DG 9 B OP1 DG 9 1_555 A NA 341 F NA NA 1_555 A HOH 500 J O HOH 1_555 90.8 P HOH 501 H O HOH 1_555 A NA 341 F NA NA 1_555 A HOH 500 J O HOH 1_555 104.3 A THR 101 D O THR 101 1_555 A NA 341 F NA NA 1_555 A HOH 500 J O HOH 1_555 83.0 A VAL 103 D O VAL 103 1_555 A NA 341 F NA NA 1_555 A HOH 500 J O HOH 1_555 94.1 A ILE 106 D O ILE 106 1_555 A NA 341 F NA NA 1_555 A HOH 500 J O HOH 1_555 172.2 D DC 3 C OP1 DC 3 1_555 D NA 342 E NA NA 1_555 D DC 3 C OP2 DC 3 1_555 56.6 D DC 3 C OP1 DC 3 1_555 D NA 342 E NA NA 1_555 A LYS 60 D O LYS 60 1_555 150.8 D DC 3 C OP2 DC 3 1_555 D NA 342 E NA NA 1_555 A LYS 60 D O LYS 60 1_555 143.4 D DC 3 C OP1 DC 3 1_555 D NA 342 E NA NA 1_555 A LEU 62 D O LEU 62 1_555 90.7 D DC 3 C OP2 DC 3 1_555 D NA 342 E NA NA 1_555 A LEU 62 D O LEU 62 1_555 136.1 A LYS 60 D O LYS 60 1_555 D NA 342 E NA NA 1_555 A LEU 62 D O LEU 62 1_555 60.3 D DC 3 C OP1 DC 3 1_555 D NA 342 E NA NA 1_555 A VAL 65 D O VAL 65 1_555 84.9 D DC 3 C OP2 DC 3 1_555 D NA 342 E NA NA 1_555 A VAL 65 D O VAL 65 1_555 67.6 A LYS 60 D O LYS 60 1_555 D NA 342 E NA NA 1_555 A VAL 65 D O VAL 65 1_555 87.6 A LEU 62 D O LEU 62 1_555 D NA 342 E NA NA 1_555 A VAL 65 D O VAL 65 1_555 82.5 D DC 3 C OP1 DC 3 1_555 D NA 342 E NA NA 1_555 A HOH 502 J O HOH 1_555 98.1 D DC 3 C OP2 DC 3 1_555 D NA 342 E NA NA 1_555 A HOH 502 J O HOH 1_555 132.5 A LYS 60 D O LYS 60 1_555 D NA 342 E NA NA 1_555 A HOH 502 J O HOH 1_555 78.8 A LEU 62 D O LEU 62 1_555 D NA 342 E NA NA 1_555 A HOH 502 J O HOH 1_555 74.9 A VAL 65 D O VAL 65 1_555 D NA 342 E NA NA 1_555 A HOH 502 J O HOH 1_555 157.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 150 D O ILE 150 A N SER 188 D N SER 188 A O ILE 174 D O ILE 174 A N THR 196 D N THR 196 A O MET 191 D O MET 191 A N ASP 256 D N ASP 256 A O ARG 253 D O ARG 253 A N CYS 239 D N CYS 239 A N MET 236 D N MET 236 A O SER 229 D O SER 229 A O THR 292 D O THR 292 A N ARG 299 D N ARG 299 1 A MET 1 D MET 1 1 Y 1 A SER 2 D SER 2 1 Y 1 A LYS 3 D LYS 3 1 Y 1 A ARG 4 D ARG 4 1 Y 1 A CA ASP 314 PLANAR 1 A A C CD ILE PRO 150 151 1.77 1 -6.61 0.70 108.00 101.39 T T T O4' C1' N1 DC DC DC 1 1 1 N 1 4.25 0.50 119.90 124.15 T T T C2 N3 C4 DC DC DC 2 2 2 N 1 -4.50 0.40 121.90 117.40 T T T N3 C4 C5 DC DC DC 2 2 2 N 1 5.48 0.70 118.00 123.48 T T T N3 C4 N4 DC DC DC 2 2 2 N 1 9.67 1.20 119.70 129.37 T T T C3' O3' P DC DC DG 2 2 3 Y 1 -9.91 1.60 120.90 110.99 T T T P O5' C5' DG DG DG 3 3 3 N 1 2.73 0.40 106.40 109.13 T T T C8 N9 C4 DG DG DG 3 3 3 N 1 3.74 0.30 108.30 112.04 T T T O4' C1' N1 DC DC DC 5 5 5 N 1 2.64 0.40 106.40 109.04 T T T C8 N9 C4 DG DG DG 6 6 6 N 1 6.64 1.10 109.80 116.44 T T T C5' C4' O4' DG DG DG 7 7 7 N 1 3.75 0.40 106.40 110.15 T T T C8 N9 C4 DG DG DG 7 7 7 N 1 -5.63 0.80 109.40 103.77 T T T O5' C5' C4' DC DC DC 8 8 8 N 1 6.51 0.30 108.30 114.81 T T T O4' C1' N1 DC DC DC 8 8 8 N 1 5.11 0.30 108.30 113.41 T T T O4' C1' N1 DC DC DC 10 10 10 N 1 -5.42 0.70 108.00 102.58 T T T O4' C1' N9 DA DA DA 11 11 11 N 1 2.86 0.40 105.80 108.66 T T T C8 N9 C4 DA DA DA 11 11 11 N 1 -5.69 0.80 109.40 103.71 T T T O5' C5' C4' DT DT DT 12 12 12 N 1 6.24 0.30 108.30 114.54 T T T O4' C1' N1 DT DT DT 12 12 12 N 1 7.37 1.20 119.70 127.07 T T T C3' O3' P DT DT DC 12 12 13 Y 1 3.21 0.50 106.80 110.01 T T T O4' C1' C2' DC DC DC 13 13 13 N 1 10.18 1.40 114.30 124.48 T T T N1 C1' C2' DC DC DC 13 13 13 N 1 9.98 1.40 114.30 124.28 T T T N9 C1' C2' DA DA DA 14 14 14 N 1 -7.19 0.70 108.00 100.81 T T T O4' C1' N9 DA DA DA 14 14 14 N 1 3.34 0.40 105.80 109.14 T T T C8 N9 C4 DA DA DA 14 14 14 N 1 3.25 0.50 128.60 131.85 T T T N3 C4 C5 DG DG DG 15 15 15 N 1 -3.19 0.50 113.10 109.91 T T T N7 C8 N9 DG DG DG 15 15 15 N 1 4.09 0.40 106.40 110.49 T T T C8 N9 C4 DG DG DG 15 15 15 N 1 3.65 0.50 106.80 110.45 T T T O4' C1' C2' DC DC DC 16 16 16 N 1 -4.27 0.60 118.90 114.63 T T T N1 C2 O2 DC DC DC 16 16 16 N 1 -3.04 0.50 113.10 110.06 P P P N7 C8 N9 DG DG DG 1 1 1 N 1 -3.76 0.60 126.00 122.24 P P P N3 C4 N9 DG DG DG 1 1 1 N 1 4.28 0.50 106.80 111.08 P P P O4' C1' C2' DC DC DC 2 2 2 N 1 4.86 0.30 108.30 113.16 P P P O4' C1' N1 DC DC DC 2 2 2 N 1 2.97 0.40 106.40 109.37 P P P C8 N9 C4 DG DG DG 4 4 4 N 1 4.27 0.70 110.30 114.57 P P P C1' O4' C4' DA DA DA 5 5 5 N 1 9.31 1.40 114.30 123.61 P P P N9 C1' C2' DA DA DA 5 5 5 N 1 2.62 0.40 105.80 108.42 P P P C8 N9 C4 DA DA DA 5 5 5 N 1 -4.81 0.80 109.40 104.59 P P P O5' C5' C4' DT DT DT 6 6 6 N 1 12.90 1.40 114.30 127.20 P P P N1 C1' C2' DT DT DT 6 6 6 N 1 8.80 1.40 114.30 123.10 P P P N9 C1' C2' DG DG DG 7 7 7 N 1 -8.75 0.70 108.00 99.25 P P P O4' C1' N9 DG DG DG 7 7 7 N 1 -4.64 0.70 108.00 103.36 P P P O4' C1' N9 DG DG DG 9 9 9 N 1 -3.64 0.50 113.10 109.46 P P P N7 C8 N9 DG DG DG 9 9 9 N 1 3.42 0.40 106.40 109.82 P P P C8 N9 C4 DG DG DG 9 9 9 N 1 -16.15 1.60 120.90 104.75 P P P P O5' C5' DC DC DC 10 10 10 N 1 3.53 0.30 108.30 111.83 P P P O4' C1' N1 DC DC DC 10 10 10 N 1 -6.90 0.70 108.00 101.10 D D D O4' C1' N9 DG DG DG 1 1 1 N 1 -3.73 0.50 113.10 109.37 D D D N7 C8 N9 DG DG DG 1 1 1 N 1 3.47 0.40 106.40 109.87 D D D C8 N9 C4 DG DG DG 1 1 1 N 1 12.01 1.40 114.30 126.31 D D D N1 C1' C2' DT DT DT 2 2 2 N 1 -4.18 0.60 127.20 123.02 D D D C2 N3 C4 DT DT DT 2 2 2 N 1 -6.69 0.80 109.40 102.71 D D D O5' C5' C4' DG DG DG 4 4 4 N 1 3.90 0.30 108.30 112.20 D D D O4' C1' N9 DG DG DG 4 4 4 N 1 -4.74 0.50 113.10 108.36 D D D N7 C8 N9 DG DG DG 4 4 4 N 1 4.18 0.40 106.40 110.58 D D D C8 N9 C4 DG DG DG 4 4 4 N 1 3.95 0.50 106.80 110.75 D D D O4' C1' C2' DG DG DG 5 5 5 N 1 -3.81 0.50 111.90 108.09 D D D C2 N3 C4 DG DG DG 5 5 5 N 1 5.10 0.50 128.60 133.70 D D D N3 C4 C5 DG DG DG 5 5 5 N 1 -3.17 0.50 113.10 109.93 D D D N7 C8 N9 DG DG DG 5 5 5 N 1 3.86 0.40 106.40 110.26 D D D C8 N9 C4 DG DG DG 5 5 5 N 1 -4.56 0.60 126.00 121.44 D D D N3 C4 N9 DG DG DG 5 5 5 N 1 -8.59 1.30 126.50 117.91 D D D C4 N9 C1' DG DG DG 5 5 5 N 1 9.78 1.50 119.30 129.08 A A A C N CA ALA PRO PRO 6 7 7 Y 1 23.89 2.70 111.00 134.89 A A A N CA C GLN GLN GLN 8 8 8 N 1 -6.52 0.90 118.30 111.78 A A A CB CG OD2 ASP ASP ASP 17 17 17 N 1 9.27 1.50 119.30 128.57 A A A C N CA TYR PRO PRO 49 50 50 Y 1 11.45 1.80 110.60 122.05 A A A N CA CB LYS LYS LYS 60 60 60 N 1 -7.47 0.90 118.30 110.83 A A A CB CG OD2 ASP ASP ASP 74 74 74 N 1 -6.92 0.90 118.30 111.38 A A A CB CG OD2 ASP ASP ASP 91 91 91 N 1 -5.91 0.90 118.30 112.39 A A A CB CG OD2 ASP ASP ASP 92 92 92 N 1 7.59 1.20 103.30 110.89 A A A N CA CB PRO PRO PRO 108 108 108 N 1 6.27 0.90 118.30 124.57 A A A CB CG OD1 ASP ASP ASP 116 116 116 N 1 -6.03 0.90 118.30 112.27 A A A CB CG OD2 ASP ASP ASP 116 116 116 N 1 -5.72 0.90 118.30 112.58 A A A CB CG OD2 ASP ASP ASP 124 124 124 N 1 -3.95 0.50 120.30 116.35 A A A NE CZ NH2 ARG ARG ARG 126 126 126 N 1 6.33 0.90 118.30 124.63 A A A CB CG OD1 ASP ASP ASP 130 130 130 N 1 -5.98 0.90 118.30 112.32 A A A CB CG OD2 ASP ASP ASP 130 130 130 N 1 -50.20 2.10 128.40 78.20 A A A C N CD ILE PRO PRO 150 151 151 Y 1 4.24 0.50 120.30 124.54 A A A NE CZ NH1 ARG ARG ARG 152 152 152 N 1 -3.29 0.50 120.30 117.01 A A A NE CZ NH2 ARG ARG ARG 152 152 152 N 1 3.80 0.50 120.30 124.10 A A A NE CZ NH1 ARG ARG ARG 183 183 183 N 1 -7.01 0.90 118.30 111.29 A A A CB CG OD2 ASP ASP ASP 190 190 190 N 1 5.77 0.90 118.30 124.07 A A A CB CG OD1 ASP ASP ASP 246 246 246 N 1 -6.17 0.90 118.30 112.13 A A A CB CG OD2 ASP ASP ASP 246 246 246 N 1 -27.12 2.10 128.40 101.28 A A A C N CD TYR PRO PRO 250 251 251 Y 1 -3.21 0.50 120.30 117.09 A A A NE CZ NH1 ARG ARG ARG 253 253 253 N 1 3.49 0.50 120.30 123.79 A A A NE CZ NH1 ARG ARG ARG 254 254 254 N 1 -5.46 0.90 118.30 112.84 A A A CB CG OD2 ASP ASP ASP 256 256 256 N 1 -7.53 0.90 118.30 110.77 A A A CB CG OD2 ASP ASP ASP 263 263 263 N 1 11.36 1.80 110.60 121.96 A A A N CA CB ASP ASP ASP 314 314 314 N 1 -5.74 0.90 118.30 112.56 A A A CB CG OD2 ASP ASP ASP 318 318 318 N 1 -6.09 0.90 118.30 112.21 A A A CB CG OD2 ASP ASP ASP 332 332 332 N 1 T T N3 C4 DA DA 4 4 -0.092 0.006 1.344 1.252 N 1 T T C6 N1 DA DA 4 4 -0.075 0.007 1.351 1.276 N 1 T T O3' C3' DG DG 7 7 -0.044 0.006 1.419 1.375 N 1 T T C5 C6 DG DG 7 7 -0.076 0.010 1.419 1.343 N 1 T T C6 N1 DG DG 7 7 -0.048 0.007 1.391 1.343 N 1 T T P O5' DT DT 12 12 -0.063 0.010 1.593 1.530 N 1 T T O3' C3' DA DA 14 14 -0.041 0.006 1.419 1.378 N 1 T T N9 C4 DG DG 15 15 -0.058 0.008 1.375 1.317 N 1 T T N1 C2 DC DC 16 16 -0.064 0.010 1.397 1.333 N 1 P P O3' C3' DG DG 1 1 -0.041 0.006 1.419 1.378 N 1 P P N3 C4 DG DG 1 1 -0.046 0.007 1.350 1.304 N 1 P P N9 C4 DG DG 1 1 -0.064 0.008 1.375 1.311 N 1 P P O3' C3' DA DA 5 5 -0.088 0.006 1.419 1.331 N 1 P P O3' C3' DT DT 6 6 -0.046 0.006 1.419 1.373 N 1 P P C2 O2 DC DC 8 8 -0.061 0.009 1.240 1.179 N 1 P P N1 C6 DC DC 8 8 -0.040 0.006 1.367 1.327 N 1 P P O3' C3' DG DG 9 9 -0.068 0.006 1.419 1.351 N 1 D D P OP3 DG DG 1 1 -0.126 0.012 1.607 1.481 N 1 D D N3 C4 DG DG 1 1 -0.046 0.007 1.350 1.304 N 1 D D C4 C5 DG DG 1 1 -0.045 0.007 1.379 1.334 N 1 D D C5 N7 DG DG 1 1 0.061 0.006 1.388 1.449 N 1 D D C4 C5 DT DT 2 2 -0.077 0.009 1.445 1.368 N 1 D D C5' C4' DC DC 3 3 0.057 0.007 1.512 1.569 N 1 D D C5 N7 DG DG 4 4 0.046 0.006 1.388 1.434 N 1 D D N7 C8 DG DG 4 4 0.040 0.006 1.305 1.345 N 1 D D C5 C6 DG DG 5 5 -0.073 0.010 1.419 1.346 N 1 D D N9 C4 DG DG 5 5 -0.071 0.008 1.375 1.304 N 1 A A CB CG GLU GLU 9 9 0.129 0.019 1.517 1.646 N 1 A A CD OE2 GLU GLU 21 21 0.068 0.011 1.252 1.320 N 1 A A CD OE2 GLU GLU 26 26 0.094 0.011 1.252 1.346 N 1 A A CD OE2 GLU GLU 71 71 0.075 0.011 1.252 1.327 N 1 A A CD OE2 GLU GLU 86 86 0.091 0.011 1.252 1.343 N 1 A A CD OE2 GLU GLU 117 117 0.091 0.011 1.252 1.343 N 1 A A CD OE2 GLU GLU 123 123 0.075 0.011 1.252 1.327 N 1 A A CD OE2 GLU GLU 147 147 0.081 0.011 1.252 1.333 N 1 A A CD OE1 GLU GLU 153 153 0.071 0.011 1.252 1.323 N 1 A A CD OE2 GLU GLU 154 154 0.067 0.011 1.252 1.319 N 1 A A CD OE2 GLU GLU 172 172 0.088 0.011 1.252 1.340 N 1 A A CD OE2 GLU GLU 186 186 0.088 0.011 1.252 1.340 N 1 A A CD OE2 GLU GLU 203 203 0.068 0.011 1.252 1.320 N 1 A A CD OE2 GLU GLU 216 216 0.067 0.011 1.252 1.319 N 1 A A CD OE2 GLU GLU 232 232 0.076 0.011 1.252 1.328 N 1 A A CD OE2 GLU GLU 249 249 0.072 0.011 1.252 1.324 N 1 A A CD OE2 GLU GLU 295 295 0.076 0.011 1.252 1.328 N 1 A A CD OE2 GLU GLU 316 316 0.066 0.011 1.252 1.318 N 1 A PRO 7 -85.10 -82.74 1 A GLN 8 47.19 -5.54 1 A GLU 9 -73.96 -76.41 1 A LEU 11 -77.96 -87.21 1 A LYS 27 -57.20 -72.83 1 A GLN 31 83.23 28.89 1 A PRO 50 -53.96 18.02 1 A ILE 53 -43.82 154.54 1 A ASP 92 -47.64 -80.10 1 A GLU 117 -75.49 20.26 1 A LYS 120 -154.99 21.02 1 A GLU 129 -39.89 -4.20 1 A PHE 143 -27.39 -64.47 1 A GLU 147 -67.72 5.97 1 A CYS 178 -106.11 -151.41 1 A ASP 190 -162.80 -167.11 1 A SER 202 -29.88 -60.07 1 A THR 225 -78.05 -91.68 1 A GLU 232 -36.91 -24.73 1 A THR 233 -132.02 -36.47 1 A TYR 250 -78.55 -154.51 1 A LYS 262 -39.15 -36.44 1 A TYR 265 -49.84 -74.64 1 A ASN 294 -168.35 -166.01 1 A VAL 306 -177.65 134.91 1 A GLU 309 76.45 91.25 1 A SER 315 177.33 174.58 1 A GLN 324 52.81 71.52 1 A TYR 327 -53.38 106.53 1 A ARG 333 -92.45 31.00 0.253 2.400 20.000 16536 16536 97.000 1 0.000 MOLECULAR REPLACEMENT PDB ENTRY 1BPY TNT PROTGEO MOEWS 86.30 0.778 2.400 20.000 81 3369 2 633 2653 0.020 3451 0.450 2.900 4721 1.000 22.00 2015 1.000 0 0.011 74 1.000 0.007 430 10.00 6.500 3451 0.025 0.019 255 10.00 2.400 20.000 1BPX 16536 0.000 0.000 0.047 1 2.900 97.000 2.400 2.490 0.27 96.90 data reduction DENZO data scaling SCALEPACK phasing MERLOT refinement TNT 5D DNA POLYMERASE BETA/DNA COMPLEX 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N 6 N N 6 N N A GLY 13 D GLY 13 HELX_P A SER 30 D SER 30 1 A 18 A ILE 33 D ILE 33 HELX_P A LYS 48 D LYS 48 1 B 16 A GLY 56 D GLY 56 HELX_P A LYS 61 D LYS 61 1 C 6 A THR 67 D THR 67 HELX_P SEE REMARK 650 A THR 79 D THR 79 1 D 13 A ARG 83 D ARG 83 HELX_P A GLN 90 D GLN 90 1 E 8 A ASP 92 D ASP 92 HELX_P A ARG 102 D ARG 102 1 F 11 A PRO 108 D PRO 108 HELX_P SEE REMARK 650 A ASP 116 D ASP 116 1 G 9 A LEU 122 D LEU 122 HELX_P A LYS 127 D LYS 127 1 H 6 A HIS 134 D HIS 134 HELX_P A GLU 147 D GLU 147 1 I 14 A ARG 152 D ARG 152 HELX_P A VAL 169 D VAL 169 1 J 18 A SER 180 D SER 180 HELX_P A ARG 183 D ARG 183 1 K 4 A PRO 208 D PRO 208 HELX_P A LYS 220 D LYS 220 1 L 13 A LYS 262 D LYS 262 HELX_P A THR 273 D THR 273 1 M 12 A ASP 276 D ASP 276 HELX_P A GLU 288 D GLU 288 1 N 13 A GLU 316 D GLU 316 HELX_P A ILE 323 D ILE 323 1 O 8 A PRO 330 D PRO 330 HELX_P A ASP 332 D ASP 332 5 P 3 metalc 1.967 P DG 9 B OP1 DG 9 1_555 A NA 341 F NA NA 1_555 metalc 2.599 P HOH 501 H O HOH 1_555 A NA 341 F NA NA 1_555 metalc 2.522 D DC 3 C OP1 DC 3 1_555 D NA 342 E NA NA 1_555 metalc 2.848 D DC 3 C OP2 DC 3 1_555 D NA 342 E NA NA 1_555 metalc 2.604 D NA 342 E NA NA 1_555 A LYS 60 D O LYS 60 1_555 metalc 2.419 D NA 342 E NA NA 1_555 A LEU 62 D O LEU 62 1_555 metalc 2.472 D NA 342 E NA NA 1_555 A VAL 65 D O VAL 65 1_555 metalc 1.816 D NA 342 E NA NA 1_555 A HOH 502 J O HOH 1_555 metalc 2.039 A THR 101 D O THR 101 1_555 A NA 341 F NA NA 1_555 metalc 2.810 A VAL 103 D O VAL 103 1_555 A NA 341 F NA NA 1_555 metalc 2.113 A ILE 106 D O ILE 106 1_555 A NA 341 F NA NA 1_555 metalc 2.692 A NA 341 F NA NA 1_555 A HOH 500 J O HOH 1_555 hydrog WATSON-CRICK T DC 1 A N3 DC 1 1_555 D DG 5 C N1 DG 5 1_555 hydrog WATSON-CRICK T DC 1 A N4 DC 1 1_555 D DG 5 C O6 DG 5 1_555 hydrog WATSON-CRICK T DC 1 A O2 DC 1 1_555 D DG 5 C N2 DG 5 1_555 hydrog WATSON-CRICK T DC 2 A N3 DC 2 1_555 D DG 4 C N1 DG 4 1_555 hydrog WATSON-CRICK T DC 2 A N4 DC 2 1_555 D DG 4 C O6 DG 4 1_555 hydrog WATSON-CRICK T DC 2 A O2 DC 2 1_555 D DG 4 C N2 DG 4 1_555 hydrog WATSON-CRICK T DG 3 A N1 DG 3 1_555 D DC 3 C N3 DC 3 1_555 hydrog WATSON-CRICK T DG 3 A N2 DG 3 1_555 D DC 3 C O2 DC 3 1_555 hydrog WATSON-CRICK T DG 3 A O6 DG 3 1_555 D DC 3 C N4 DC 3 1_555 hydrog WATSON-CRICK T DA 4 A N1 DA 4 1_555 D DT 2 C N3 DT 2 1_555 hydrog WATSON-CRICK T DA 4 A N6 DA 4 1_555 D DT 2 C O4 DT 2 1_555 hydrog WATSON-CRICK T DC 5 A N3 DC 5 1_555 D DG 1 C N1 DG 1 1_555 hydrog WATSON-CRICK T DC 5 A N4 DC 5 1_555 D DG 1 C O6 DG 1 1_555 hydrog WATSON-CRICK T DC 5 A O2 DC 5 1_555 D DG 1 C N2 DG 1 1_555 hydrog WATSON-CRICK T DG 7 A N1 DG 7 1_555 P DC 10 B N3 DC 10 1_555 hydrog WATSON-CRICK T DG 7 A N2 DG 7 1_555 P DC 10 B O2 DC 10 1_555 hydrog WATSON-CRICK T DG 7 A O6 DG 7 1_555 P DC 10 B N4 DC 10 1_555 hydrog WATSON-CRICK T DC 8 A N3 DC 8 1_555 P DG 9 B N1 DG 9 1_555 hydrog WATSON-CRICK T DC 8 A N4 DC 8 1_555 P DG 9 B O6 DG 9 1_555 hydrog WATSON-CRICK T DC 8 A O2 DC 8 1_555 P DG 9 B N2 DG 9 1_555 hydrog WATSON-CRICK T DG 9 A N1 DG 9 1_555 P DC 8 B N3 DC 8 1_555 hydrog WATSON-CRICK T DG 9 A N2 DG 9 1_555 P DC 8 B O2 DC 8 1_555 hydrog WATSON-CRICK T DG 9 A O6 DG 9 1_555 P DC 8 B N4 DC 8 1_555 hydrog WATSON-CRICK T DC 10 A N3 DC 10 1_555 P DG 7 B N1 DG 7 1_555 hydrog WATSON-CRICK T DC 10 A N4 DC 10 1_555 P DG 7 B O6 DG 7 1_555 hydrog WATSON-CRICK T DC 10 A O2 DC 10 1_555 P DG 7 B N2 DG 7 1_555 hydrog WATSON-CRICK T DA 11 A N1 DA 11 1_555 P DT 6 B N3 DT 6 1_555 hydrog WATSON-CRICK T DA 11 A N6 DA 11 1_555 P DT 6 B O4 DT 6 1_555 hydrog WATSON-CRICK T DT 12 A N3 DT 12 1_555 P DA 5 B N1 DA 5 1_555 hydrog WATSON-CRICK T DT 12 A O4 DT 12 1_555 P DA 5 B N6 DA 5 1_555 hydrog WATSON-CRICK T DC 13 A N3 DC 13 1_555 P DG 4 B N1 DG 4 1_555 hydrog WATSON-CRICK T DC 13 A N4 DC 13 1_555 P DG 4 B O6 DG 4 1_555 hydrog WATSON-CRICK T DC 13 A O2 DC 13 1_555 P DG 4 B N2 DG 4 1_555 hydrog WATSON-CRICK T DA 14 A N1 DA 14 1_555 P DT 3 B N3 DT 3 1_555 hydrog WATSON-CRICK T DA 14 A N6 DA 14 1_555 P DT 3 B O4 DT 3 1_555 hydrog WATSON-CRICK T DG 15 A N1 DG 15 1_555 P DC 2 B N3 DC 2 1_555 hydrog WATSON-CRICK T DG 15 A N2 DG 15 1_555 P DC 2 B O2 DC 2 1_555 hydrog WATSON-CRICK T DG 15 A O6 DG 15 1_555 P DC 2 B N4 DC 2 1_555 hydrog WATSON-CRICK T DC 16 A N3 DC 16 1_555 P DG 1 B N1 DG 1 1_555 hydrog WATSON-CRICK T DC 16 A N4 DC 16 1_555 P DG 1 B O6 DG 1 1_555 hydrog WATSON-CRICK T DC 16 A O2 DC 16 1_555 P DG 1 B N2 DG 1 1_555 TRANSFERASE/DNA NUCLEOTIDYLTRANSFERASE, DNA REPAIR, BASE EXCISION REPAIR PATHWAY, TRANSFERASE-DNA COMPLEX A GLY 274 D GLY 274 1 A SER 275 D SER 275 0.54 DPOB_HUMAN UNP 4 1 P06746 1BPX PDB 1 1BPX 1BPX PDB 2 1BPX 1BPX PDB 3 1BPX 1 334 1BPX 2 335 P06746 A 1 2 335 1 16 1BPX 1 16 1BPX T 2 1 16 1 10 1BPX 1 10 1BPX P 3 1 10 1 5 1BPX 1 5 1BPX D 4 1 5 2 5 2 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A ILE 150 D ILE 150 A PRO 151 D PRO 151 A SER 187 D SER 187 A SER 188 D SER 188 A ILE 174 D ILE 174 A CYS 178 D CYS 178 A MET 191 D MET 191 A THR 196 D THR 196 A ARG 253 D ARG 253 A ARG 258 D ARG 258 A LYS 234 D LYS 234 A CYS 239 D CYS 239 A SER 229 D SER 229 A GLY 231 D GLY 231 A PHE 291 D PHE 291 A ASN 294 D ASN 294 A THR 297 D THR 297 A PRO 300 D PRO 300 Unknown 3 BINDING SITE FOR RESIDUE NA A 341 A NA 341 Software 6 BINDING SITE FOR RESIDUE NA D 342 D NA 342 Software 5 A ASP 190 D ASP 190 3 1_555 A ASP 192 D ASP 192 3 1_555 A ASP 256 D ASP 256 3 1_555 A THR 101 D THR 101 6 1_555 A VAL 103 D VAL 103 6 1_555 A ILE 106 D ILE 106 6 1_555 A HOH 500 J HOH 6 1_555 P DG 9 B DG 9 6 1_555 P HOH 501 H HOH 6 1_555 A LYS 60 D LYS 60 5 1_555 A LEU 62 D LEU 62 5 1_555 A VAL 65 D VAL 65 5 1_555 A HOH 502 J HOH 5 1_555 D DC 3 C DC 3 5 1_555 4 P 1 21 1