0.018679 0.000000 0.005904 0.000000 0.012714 0.000000 0.000000 0.000000 0.019202 0.00000 0.00000 0.00000 Sawaya, M.R. Prasad, R. Wilson, S.H. Kraut, J. Pelletier, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 107.54 90.00 53.535 78.656 54.618 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 36 11205 11215 10.1021/bi9703812 9287163 Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism. 1997 US Biochemistry BICHAW 0033 0006-2960 35 12778 Characterization of the Metal Ion Binding Helix-Hairpin-Helix Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis 1996 US Biochemistry BICHAW 0033 0006-2960 35 12762 A Structural Basis for Metal Ion Mutagenicity and Nucleotide Selectivity in Human DNA Polymerase Beta 1996 US Biochemistry BICHAW 0033 0006-2960 35 12742 Crystal Structures of Human DNA Polymerase Beta Complexed with DNA: Implications for Catalytic Mechanism, Processivity, and Fidelity 1996 US Science SCIEAS 0038 0036-8075 264 1930 Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism 1994 US Science SCIEAS 0038 0036-8075 264 1891 Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP 1994 10.2210/pdb1bpz/pdb pdb_00001bpz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.00 1 MIRRORS IMAGE PLATE 1996-11-15 MARRESEARCH SI(111) CRYSTAL SINGLE WAVELENGTH M x-ray 1 1.0 BL7-1 SSRL SYNCHROTRON SSRL BEAMLINE BL7-1 4813.134 DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') 1 syn polymer 3405.220 DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3') 1 syn polymer 1536.035 DNA (5'-D(*GP*TP*CP*GP*G)-3') 1 syn polymer 38241.672 PROTEIN (DNA POLYMERASE BETA) 2.7.7.7 1 man polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 27 nat water POL BETA, BETA-POL no no (DC)(DC)(DG)(DA)(DC)(DC)(DA)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC) CCGACCACGCATCAGC T polydeoxyribonucleotide no no (DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DT)(DG) GCTGATGCGTG P polydeoxyribonucleotide no no (DG)(DT)(DC)(DG)(DG) GTCGG D polydeoxyribonucleotide no no MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample NUCLEUS 9606 Homo sapiens 562 Escherichia coli 1 2.10 41.4000 VAPOR DIFFUSION 7.0 PROTEIN-DNA COMPLEX WAS CRYSTALLIZED USING A RESERVOIR CONTAINING 17.5% PEG 3350, 90 MM SODIUM ACETATE, AND 50 MM IMIDAZOLE, PH 7.0., VAPOR DIFFUSION -0.101 1 19 T 1 D 5 -0.143 T_DC1:DG5_D 1 -2.440 -0.252 0.130 -0.122 -2.951 1 19 T 2 D 4 -0.041 T_DC2:DG4_D 2 0.142 0.492 0.147 -0.303 -0.597 1 19 T 3 D 3 -5.502 T_DG3:DC3_D 3 -2.945 -0.299 -0.029 -0.174 0.191 1 20 T 4 D 2 1.782 T_DA4:DT2_D 4 -1.021 -0.076 -0.016 -0.095 1.192 1 19 T 5 D 1 -0.415 T_DC5:DG1_D 5 -0.591 -0.528 -0.093 -0.062 -2.074 1 19 T 6 P 11 1.966 T_DC6:DG11_P 6 0.037 -0.184 0.082 -0.052 -0.910 1 20 T 7 P 10 -8.142 T_DA7:DT10_P 7 -3.831 0.183 -0.126 -0.089 2.547 1 19 T 8 P 9 -1.251 T_DC8:DG9_P 8 -3.038 0.341 -0.048 -0.079 1.677 1 19 T 9 P 8 -2.488 T_DG9:DC8_P 9 -0.835 0.449 0.094 -0.194 0.815 1 19 T 10 P 7 -2.953 T_DC10:DG7_P 10 -0.661 -0.580 0.083 -0.184 1.057 1 20 T 11 P 6 -9.926 T_DA11:DT6_P 11 -2.022 -0.022 0.108 -0.038 -1.273 1 20 T 12 P 5 -0.251 T_DT12:DA5_P 12 -2.399 -0.217 0.135 0.038 0.499 1 19 T 13 P 4 -1.660 T_DC13:DG4_P 13 -4.175 0.527 0.029 -0.218 -0.062 1 20 T 14 P 3 -1.978 T_DA14:DT3_P 14 -3.866 -0.760 -0.081 -0.336 -0.112 1 19 T 15 P 2 3.341 T_DG15:DC2_P 15 -2.702 0.236 -0.031 -0.056 1.226 1 19 T 16 P 1 -0.715 T_DC16:DG1_P 16 -2.441 -0.253 -0.010 -0.229 3.479 39.762 T T 1 2 3.478 D D 5 4 3.475 2.365 0.836 0.129 TT_DC1DC2:DG4DG5_DD 1 0.125 -0.184 39.694 -0.102 -1.213 3.189 32.656 T T 2 3 -1.113 D D 4 3 3.117 -0.625 -1.136 0.393 TT_DC2DG3:DC3DG4_DD 2 -2.645 4.710 32.546 0.804 1.577 3.311 38.169 T T 3 4 3.767 D D 3 2 3.320 2.461 -0.273 -0.165 TT_DG3DA4:DT2DC3_DD 3 -1.477 2.261 38.065 -0.567 0.229 3.380 23.466 T T 4 5 -0.132 D D 2 1 3.379 -0.054 0.524 -0.332 TT_DA4DC5:DG1DT2_DD 4 0.039 -0.095 23.466 -0.797 -1.275 4.032 30.128 T T 6 7 8.329 P P 11 10 3.973 4.312 -0.400 0.961 TT_DC6DA7:DT10DG11_PP 5 2.060 -3.979 29.756 0.764 1.287 3.310 28.894 T T 7 8 4.334 P P 10 9 3.370 2.160 1.070 -0.554 TT_DA7DC8:DG9DT10_PP 6 -0.258 0.518 28.814 -1.600 -2.203 3.444 40.812 T T 8 9 18.192 P P 9 8 3.484 12.492 -0.915 0.238 TT_DC8DG9:DC8DG9_PP 7 -2.322 3.381 38.864 -1.155 1.034 3.004 20.967 T T 9 10 14.070 P P 8 7 3.235 5.051 -0.280 -0.596 TT_DG9DC10:DG7DC8_PP 8 -3.125 8.703 20.117 -3.725 -0.521 3.061 46.140 T T 10 11 9.354 P P 7 6 3.164 7.303 -0.222 -0.487 TT_DC10DA11:DT6DG7_PP 9 -1.320 1.691 45.571 -1.220 0.175 3.377 32.448 T T 11 12 -8.103 P P 6 5 3.355 -4.514 0.396 -0.395 TT_DA11DT12:DA5DT6_PP 10 -0.034 0.060 32.140 0.113 -0.714 3.077 38.852 T T 12 13 0.486 P P 5 4 3.089 0.323 0.122 -0.369 TT_DT12DC13:DG4DA5_PP 11 -1.841 2.769 38.808 -0.592 -0.394 3.067 33.500 T T 13 14 14.225 P P 4 3 3.167 8.113 -0.568 -0.193 TT_DC13DA14:DT3DG4_PP 12 -2.733 4.791 32.418 -1.629 0.550 3.416 34.886 T T 14 15 -3.553 P P 3 2 3.414 -2.127 0.389 -0.592 TT_DA14DG15:DC2DT3_PP 13 -2.002 3.343 34.767 -0.650 -0.966 3.216 29.301 T T 15 16 4.739 P P 2 1 3.257 2.394 0.015 -0.376 TT_DG15DC16:DG1DC2_PP 14 -0.692 1.370 29.197 -1.255 -0.178 database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 1997-06-16 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y NDB 1997-04-14 REL REL NA SODIUM ION HOH water THE 5'-TERMINUS OF G D 1 IS PHOSPHORYLATED. 9ICJ PDB ENTRY 9ICJ PDB experimental model NA 341 5 NA NA 341 A NA 342 5 NA NA 342 A HOH 509 6 HOH HOH 509 T HOH 513 6 HOH HOH 513 T HOH 519 6 HOH HOH 519 T HOH 522 6 HOH HOH 522 T HOH 523 6 HOH HOH 523 T HOH 524 6 HOH HOH 524 T HOH 506 6 HOH HOH 506 P HOH 508 6 HOH HOH 508 P HOH 515 6 HOH HOH 515 P HOH 521 6 HOH HOH 521 P HOH 525 6 HOH HOH 525 P HOH 527 6 HOH HOH 527 P HOH 514 6 HOH HOH 514 D HOH 500 6 HOH HOH 500 A HOH 501 6 HOH HOH 501 A HOH 502 6 HOH HOH 502 A HOH 504 6 HOH HOH 504 A HOH 505 6 HOH HOH 505 A HOH 507 6 HOH HOH 507 A HOH 510 6 HOH HOH 510 A HOH 511 6 HOH HOH 511 A HOH 512 6 HOH HOH 512 A HOH 516 6 HOH HOH 516 A HOH 517 6 HOH HOH 517 A HOH 518 6 HOH HOH 518 A HOH 520 6 HOH HOH 520 A HOH 526 6 HOH HOH 526 A C 1 n 1 DC 1 T C 2 n 2 DC 2 T G 3 n 3 DG 3 T A 4 n 4 DA 4 T C 5 n 5 DC 5 T C 6 n 6 DC 6 T A 7 n 7 DA 7 T C 8 n 8 DC 8 T G 9 n 9 DG 9 T C 10 n 10 DC 10 T A 11 n 11 DA 11 T T 12 n 12 DT 12 T C 13 n 13 DC 13 T A 14 n 14 DA 14 T G 15 n 15 DG 15 T C 16 n 16 DC 16 T G 1 n 1 DG 1 P C 2 n 2 DC 2 P T 3 n 3 DT 3 P G 4 n 4 DG 4 P A 5 n 5 DA 5 P T 6 n 6 DT 6 P G 7 n 7 DG 7 P C 8 n 8 DC 8 P G 9 n 9 DG 9 P T 10 n 10 DT 10 P G 11 n 11 DG 11 P G 1 n 1 DG 1 D T 2 n 2 DT 2 D C 3 n 3 DC 3 D G 4 n 4 DG 4 D G 5 n 5 DG 5 D n 1 1 A n 2 2 A n 3 3 A n 4 4 A LYS 5 n 5 LYS 5 A ALA 6 n 6 ALA 6 A PRO 7 n 7 PRO 7 A GLN 8 n 8 GLN 8 A GLU 9 n 9 GLU 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A ASN 12 n 12 ASN 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A ILE 15 n 15 ILE 15 A THR 16 n 16 THR 16 A ASP 17 n 17 ASP 17 A MET 18 n 18 MET 18 A LEU 19 n 19 LEU 19 A THR 20 n 20 THR 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A ALA 23 n 23 ALA 23 A ASN 24 n 24 ASN 24 A PHE 25 n 25 PHE 25 A GLU 26 n 26 GLU 26 A LYS 27 n 27 LYS 27 A ASN 28 n 28 ASN 28 A VAL 29 n 29 VAL 29 A SER 30 n 30 SER 30 A GLN 31 n 31 GLN 31 A ALA 32 n 32 ALA 32 A ILE 33 n 33 ILE 33 A HIS 34 n 34 HIS 34 A LYS 35 n 35 LYS 35 A TYR 36 n 36 TYR 36 A ASN 37 n 37 ASN 37 A ALA 38 n 38 ALA 38 A TYR 39 n 39 TYR 39 A ARG 40 n 40 ARG 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A ALA 43 n 43 ALA 43 A SER 44 n 44 SER 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A PRO 50 n 50 PRO 50 A HIS 51 n 51 HIS 51 A LYS 52 n 52 LYS 52 A ILE 53 n 53 ILE 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A GLY 56 n 56 GLY 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A LYS 61 n 61 LYS 61 A LEU 62 n 62 LEU 62 A PRO 63 n 63 PRO 63 A GLY 64 n 64 GLY 64 A VAL 65 n 65 VAL 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A LYS 68 n 68 LYS 68 A ILE 69 n 69 ILE 69 A ALA 70 n 70 ALA 70 A GLU 71 n 71 GLU 71 A LYS 72 n 72 LYS 72 A ILE 73 n 73 ILE 73 A ASP 74 n 74 ASP 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A LEU 77 n 77 LEU 77 A ALA 78 n 78 ALA 78 A THR 79 n 79 THR 79 A GLY 80 n 80 GLY 80 A LYS 81 n 81 LYS 81 A LEU 82 n 82 LEU 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A LEU 85 n 85 LEU 85 A GLU 86 n 86 GLU 86 A LYS 87 n 87 LYS 87 A ILE 88 n 88 ILE 88 A ARG 89 n 89 ARG 89 A GLN 90 n 90 GLN 90 A ASP 91 n 91 ASP 91 A ASP 92 n 92 ASP 92 A THR 93 n 93 THR 93 A SER 94 n 94 SER 94 A SER 95 n 95 SER 95 A SER 96 n 96 SER 96 A ILE 97 n 97 ILE 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A LEU 100 n 100 LEU 100 A THR 101 n 101 THR 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A SER 104 n 104 SER 104 A GLY 105 n 105 GLY 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A PRO 108 n 108 PRO 108 A SER 109 n 109 SER 109 A ALA 110 n 110 ALA 110 A ALA 111 n 111 ALA 111 A ARG 112 n 112 ARG 112 A LYS 113 n 113 LYS 113 A PHE 114 n 114 PHE 114 A VAL 115 n 115 VAL 115 A ASP 116 n 116 ASP 116 A GLU 117 n 117 GLU 117 A GLY 118 n 118 GLY 118 A ILE 119 n 119 ILE 119 A LYS 120 n 120 LYS 120 A THR 121 n 121 THR 121 A LEU 122 n 122 LEU 122 A GLU 123 n 123 GLU 123 A ASP 124 n 124 ASP 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A ASN 128 n 128 ASN 128 A GLU 129 n 129 GLU 129 A ASP 130 n 130 ASP 130 A LYS 131 n 131 LYS 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A HIS 134 n 134 HIS 134 A HIS 135 n 135 HIS 135 A GLN 136 n 136 GLN 136 A ARG 137 n 137 ARG 137 A ILE 138 n 138 ILE 138 A GLY 139 n 139 GLY 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A TYR 142 n 142 TYR 142 A PHE 143 n 143 PHE 143 A GLY 144 n 144 GLY 144 A ASP 145 n 145 ASP 145 A PHE 146 n 146 PHE 146 A GLU 147 n 147 GLU 147 A LYS 148 n 148 LYS 148 A ARG 149 n 149 ARG 149 A ILE 150 n 150 ILE 150 A PRO 151 n 151 PRO 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A GLU 154 n 154 GLU 154 A MET 155 n 155 MET 155 A LEU 156 n 156 LEU 156 A GLN 157 n 157 GLN 157 A MET 158 n 158 MET 158 A GLN 159 n 159 GLN 159 A ASP 160 n 160 ASP 160 A ILE 161 n 161 ILE 161 A VAL 162 n 162 VAL 162 A LEU 163 n 163 LEU 163 A ASN 164 n 164 ASN 164 A GLU 165 n 165 GLU 165 A VAL 166 n 166 VAL 166 A LYS 167 n 167 LYS 167 A LYS 168 n 168 LYS 168 A VAL 169 n 169 VAL 169 A ASP 170 n 170 ASP 170 A SER 171 n 171 SER 171 A GLU 172 n 172 GLU 172 A TYR 173 n 173 TYR 173 A ILE 174 n 174 ILE 174 A ALA 175 n 175 ALA 175 A THR 176 n 176 THR 176 A VAL 177 n 177 VAL 177 A CYS 178 n 178 CYS 178 A GLY 179 n 179 GLY 179 A SER 180 n 180 SER 180 A PHE 181 n 181 PHE 181 A ARG 182 n 182 ARG 182 A ARG 183 n 183 ARG 183 A GLY 184 n 184 GLY 184 A ALA 185 n 185 ALA 185 A GLU 186 n 186 GLU 186 A SER 187 n 187 SER 187 A SER 188 n 188 SER 188 A GLY 189 n 189 GLY 189 A ASP 190 n 190 ASP 190 A MET 191 n 191 MET 191 A ASP 192 n 192 ASP 192 A VAL 193 n 193 VAL 193 A LEU 194 n 194 LEU 194 A LEU 195 n 195 LEU 195 A THR 196 n 196 THR 196 A HIS 197 n 197 HIS 197 A PRO 198 n 198 PRO 198 A SER 199 n 199 SER 199 A PHE 200 n 200 PHE 200 A THR 201 n 201 THR 201 A SER 202 n 202 SER 202 A GLU 203 n 203 GLU 203 A SER 204 n 204 SER 204 A THR 205 n 205 THR 205 A LYS 206 n 206 LYS 206 A GLN 207 n 207 GLN 207 A PRO 208 n 208 PRO 208 A LYS 209 n 209 LYS 209 A LEU 210 n 210 LEU 210 A LEU 211 n 211 LEU 211 A HIS 212 n 212 HIS 212 A GLN 213 n 213 GLN 213 A VAL 214 n 214 VAL 214 A VAL 215 n 215 VAL 215 A GLU 216 n 216 GLU 216 A GLN 217 n 217 GLN 217 A LEU 218 n 218 LEU 218 A GLN 219 n 219 GLN 219 A LYS 220 n 220 LYS 220 A VAL 221 n 221 VAL 221 A HIS 222 n 222 HIS 222 A PHE 223 n 223 PHE 223 A ILE 224 n 224 ILE 224 A THR 225 n 225 THR 225 A ASP 226 n 226 ASP 226 A THR 227 n 227 THR 227 A LEU 228 n 228 LEU 228 A SER 229 n 229 SER 229 A LYS 230 n 230 LYS 230 A GLY 231 n 231 GLY 231 A GLU 232 n 232 GLU 232 A THR 233 n 233 THR 233 A LYS 234 n 234 LYS 234 A PHE 235 n 235 PHE 235 A MET 236 n 236 MET 236 A GLY 237 n 237 GLY 237 A VAL 238 n 238 VAL 238 A CYS 239 n 239 CYS 239 A GLN 240 n 240 GLN 240 A LEU 241 n 241 LEU 241 A PRO 242 n 242 PRO 242 A SER 243 n 243 SER 243 A LYS 244 n 244 LYS 244 A ASN 245 n 245 ASN 245 A ASP 246 n 246 ASP 246 A GLU 247 n 247 GLU 247 A LYS 248 n 248 LYS 248 A GLU 249 n 249 GLU 249 A TYR 250 n 250 TYR 250 A PRO 251 n 251 PRO 251 A HIS 252 n 252 HIS 252 A ARG 253 n 253 ARG 253 A ARG 254 n 254 ARG 254 A ILE 255 n 255 ILE 255 A ASP 256 n 256 ASP 256 A ILE 257 n 257 ILE 257 A ARG 258 n 258 ARG 258 A LEU 259 n 259 LEU 259 A ILE 260 n 260 ILE 260 A PRO 261 n 261 PRO 261 A LYS 262 n 262 LYS 262 A ASP 263 n 263 ASP 263 A GLN 264 n 264 GLN 264 A TYR 265 n 265 TYR 265 A TYR 266 n 266 TYR 266 A CYS 267 n 267 CYS 267 A GLY 268 n 268 GLY 268 A VAL 269 n 269 VAL 269 A LEU 270 n 270 LEU 270 A TYR 271 n 271 TYR 271 A PHE 272 n 272 PHE 272 A THR 273 n 273 THR 273 A GLY 274 n 274 GLY 274 A SER 275 n 275 SER 275 A ASP 276 n 276 ASP 276 A ILE 277 n 277 ILE 277 A PHE 278 n 278 PHE 278 A ASN 279 n 279 ASN 279 A LYS 280 n 280 LYS 280 A ASN 281 n 281 ASN 281 A MET 282 n 282 MET 282 A ARG 283 n 283 ARG 283 A ALA 284 n 284 ALA 284 A HIS 285 n 285 HIS 285 A ALA 286 n 286 ALA 286 A LEU 287 n 287 LEU 287 A GLU 288 n 288 GLU 288 A LYS 289 n 289 LYS 289 A GLY 290 n 290 GLY 290 A PHE 291 n 291 PHE 291 A THR 292 n 292 THR 292 A ILE 293 n 293 ILE 293 A ASN 294 n 294 ASN 294 A GLU 295 n 295 GLU 295 A TYR 296 n 296 TYR 296 A THR 297 n 297 THR 297 A ILE 298 n 298 ILE 298 A ARG 299 n 299 ARG 299 A PRO 300 n 300 PRO 300 A LEU 301 n 301 LEU 301 A GLY 302 n 302 GLY 302 A VAL 303 n 303 VAL 303 A THR 304 n 304 THR 304 A GLY 305 n 305 GLY 305 A VAL 306 n 306 VAL 306 A ALA 307 n 307 ALA 307 A GLY 308 n 308 GLY 308 A GLU 309 n 309 GLU 309 A PRO 310 n 310 PRO 310 A LEU 311 n 311 LEU 311 A PRO 312 n 312 PRO 312 A VAL 313 n 313 VAL 313 A ASP 314 n 314 ASP 314 A SER 315 n 315 SER 315 A GLU 316 n 316 GLU 316 A LYS 317 n 317 LYS 317 A ASP 318 n 318 ASP 318 A ILE 319 n 319 ILE 319 A PHE 320 n 320 PHE 320 A ASP 321 n 321 ASP 321 A TYR 322 n 322 TYR 322 A ILE 323 n 323 ILE 323 A GLN 324 n 324 GLN 324 A TRP 325 n 325 TRP 325 A LYS 326 n 326 LYS 326 A TYR 327 n 327 TYR 327 A ARG 328 n 328 ARG 328 A GLU 329 n 329 GLU 329 A PRO 330 n 330 PRO 330 A LYS 331 n 331 LYS 331 A ASP 332 n 332 ASP 332 A ARG 333 n 333 ARG 333 A SER 334 n 334 SER 334 A GLU 335 n 335 GLU 335 A 0.243 author_defined_assembly 4 tetrameric P DG 9 B OP1 DG 9 1_555 A NA 341 E NA NA 1_555 A THR 101 D O THR 101 1_555 151.7 P DG 9 B OP1 DG 9 1_555 A NA 341 E NA NA 1_555 A VAL 103 D O VAL 103 1_555 89.4 A THR 101 D O THR 101 1_555 A NA 341 E NA NA 1_555 A VAL 103 D O VAL 103 1_555 78.4 P DG 9 B OP1 DG 9 1_555 A NA 341 E NA NA 1_555 A ILE 106 D O ILE 106 1_555 86.2 A THR 101 D O THR 101 1_555 A NA 341 E NA NA 1_555 A ILE 106 D O ILE 106 1_555 119.1 A VAL 103 D O VAL 103 1_555 A NA 341 E NA NA 1_555 A ILE 106 D O ILE 106 1_555 91.1 P DG 9 B OP1 DG 9 1_555 A NA 341 E NA NA 1_555 A HOH 500 J O HOH 1_555 78.1 A THR 101 D O THR 101 1_555 A NA 341 E NA NA 1_555 A HOH 500 J O HOH 1_555 76.1 A VAL 103 D O VAL 103 1_555 A NA 341 E NA NA 1_555 A HOH 500 J O HOH 1_555 88.1 A ILE 106 D O ILE 106 1_555 A NA 341 E NA NA 1_555 A HOH 500 J O HOH 1_555 164.3 D DC 3 C OP1 DC 3 1_555 A NA 342 F NA NA 1_555 A LYS 60 D O LYS 60 1_555 152.9 D DC 3 C OP1 DC 3 1_555 A NA 342 F NA NA 1_555 A LEU 62 D O LEU 62 1_555 74.2 A LYS 60 D O LYS 60 1_555 A NA 342 F NA NA 1_555 A LEU 62 D O LEU 62 1_555 81.0 D DC 3 C OP1 DC 3 1_555 A NA 342 F NA NA 1_555 A VAL 65 D O VAL 65 1_555 69.9 A LYS 60 D O LYS 60 1_555 A NA 342 F NA NA 1_555 A VAL 65 D O VAL 65 1_555 99.3 A LEU 62 D O LEU 62 1_555 A NA 342 F NA NA 1_555 A VAL 65 D O VAL 65 1_555 89.0 D DC 3 C OP1 DC 3 1_555 A NA 342 F NA NA 1_555 A HOH 502 J O HOH 1_555 72.9 A LYS 60 D O LYS 60 1_555 A NA 342 F NA NA 1_555 A HOH 502 J O HOH 1_555 105.7 A LEU 62 D O LEU 62 1_555 A NA 342 F NA NA 1_555 A HOH 502 J O HOH 1_555 63.7 A VAL 65 D O VAL 65 1_555 A NA 342 F NA NA 1_555 A HOH 502 J O HOH 1_555 138.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 150 D O ILE 150 A N SER 188 D N SER 188 A O ILE 174 D O ILE 174 A N THR 196 D N THR 196 A O MET 191 D O MET 191 A N ASP 256 D N ASP 256 A O ARG 253 D O ARG 253 A N CYS 239 D N CYS 239 A N MET 236 D N MET 236 A O SER 229 D O SER 229 A O THR 292 D O THR 292 A N ARG 299 D N ARG 299 1 A MET 1 D MET 1 1 Y 1 A SER 2 D SER 2 1 Y 1 A LYS 3 D LYS 3 1 Y 1 A ARG 4 D ARG 4 1 Y 1 A CA ASN 164 PLANAR 1 -6.38 0.70 108.00 101.62 T T T O4' C1' N1 DC DC DC 1 1 1 N 1 2.46 0.40 120.30 122.76 T T T C6 N1 C2 DC DC DC 1 1 1 N 1 6.63 0.90 103.10 109.73 T T T C4' C3' C2' DC DC DC 2 2 2 N 1 2.20 0.30 108.30 110.50 T T T O4' C1' N1 DC DC DC 2 2 2 N 1 -2.96 0.40 121.90 118.94 T T T N3 C4 C5 DC DC DC 2 2 2 N 1 13.12 1.20 119.70 132.82 T T T C3' O3' P DC DC DG 2 2 3 Y 1 4.80 0.30 108.30 113.10 T T T O4' C1' N9 DG DG DG 3 3 3 N 1 -3.06 0.50 110.60 107.54 T T T C2 N3 C4 DA DA DA 4 4 4 N 1 -3.67 0.50 117.70 114.03 T T T C5 C6 N1 DA DA DA 4 4 4 N 1 10.06 1.40 114.30 124.36 T T T N1 C1' C2' DC DC DC 5 5 5 N 1 5.09 0.30 108.30 113.39 T T T O4' C1' N1 DC DC DC 5 5 5 N 1 -3.71 0.40 120.30 116.59 T T T C6 N1 C2 DC DC DC 5 5 5 N 1 4.91 0.70 119.20 124.11 T T T N1 C2 N3 DC DC DC 5 5 5 N 1 -4.48 0.60 118.90 114.42 T T T N1 C2 O2 DC DC DC 5 5 5 N 1 3.08 0.40 105.80 108.88 T T T C8 N9 C4 DA DA DA 7 7 7 N 1 -5.74 0.80 109.40 103.66 T T T O5' C5' C4' DC DC DC 8 8 8 N 1 3.05 0.50 106.80 109.85 T T T O4' C1' C2' DC DC DC 8 8 8 N 1 -7.23 0.70 108.00 100.77 T T T O4' C1' N9 DG DG DG 9 9 9 N 1 -2.95 0.40 105.40 102.45 T T T N9 C4 C5 DG DG DG 9 9 9 N 1 -3.67 0.60 130.40 126.73 T T T C6 C5 N7 DG DG DG 9 9 9 N 1 7.35 1.20 115.70 123.05 T T T C5' C4' C3' DC DC DC 10 10 10 N 1 -3.53 0.50 119.90 116.37 T T T C2 N3 C4 DC DC DC 10 10 10 N 1 4.78 0.40 121.90 126.68 T T T N3 C4 C5 DC DC DC 10 10 10 N 1 7.49 1.20 119.70 127.19 T T T C3' O3' P DC DC DA 10 10 11 Y 1 -5.05 0.70 108.00 102.95 T T T O4' C1' N9 DA DA DA 11 11 11 N 1 -3.60 0.50 113.80 110.20 T T T N7 C8 N9 DA DA DA 11 11 11 N 1 4.04 0.40 105.80 109.84 T T T C8 N9 C4 DA DA DA 11 11 11 N 1 -2.52 0.40 105.80 103.28 T T T N9 C4 C5 DA DA DA 11 11 11 N 1 12.34 1.40 114.30 126.64 T T T N1 C1' C2' DC DC DC 13 13 13 N 1 -8.14 0.70 108.00 99.86 T T T O4' C1' N9 DA DA DA 14 14 14 N 1 -3.04 0.50 113.80 110.76 T T T N7 C8 N9 DA DA DA 14 14 14 N 1 3.56 0.40 105.80 109.36 T T T C8 N9 C4 DA DA DA 14 14 14 N 1 7.52 1.20 115.70 123.22 T T T C5' C4' C3' DG DG DG 15 15 15 N 1 -9.93 1.60 120.90 110.97 T T T P O5' C5' DC DC DC 16 16 16 N 1 3.76 0.50 106.80 110.56 T T T O4' C1' C2' DC DC DC 16 16 16 N 1 2.85 0.30 108.30 111.15 T T T O4' C1' N1 DC DC DC 16 16 16 N 1 2.55 0.40 120.30 122.85 T T T C6 N1 C2 DC DC DC 16 16 16 N 1 -6.53 0.70 118.00 111.47 T T T N3 C4 N4 DC DC DC 16 16 16 N 1 4.66 0.70 120.20 124.86 T T T C5 C4 N4 DC DC DC 16 16 16 N 1 3.73 0.50 106.80 110.53 P P P O4' C1' C2' DG DG DG 1 1 1 N 1 -5.47 0.70 108.00 102.53 P P P O4' C1' N9 DG DG DG 1 1 1 N 1 -4.52 0.50 111.90 107.38 P P P C2 N3 C4 DG DG DG 1 1 1 N 1 3.35 0.50 128.60 131.95 P P P N3 C4 C5 DG DG DG 1 1 1 N 1 2.80 0.40 106.40 109.20 P P P C8 N9 C4 DG DG DG 1 1 1 N 1 2.99 0.30 108.30 111.29 P P P O4' C1' N1 DC DC DC 2 2 2 N 1 4.27 0.30 108.30 112.57 P P P O4' C1' N1 DT DT DT 3 3 3 N 1 3.77 0.30 108.30 112.07 P P P O4' C1' N9 DG DG DG 4 4 4 N 1 3.97 0.40 106.40 110.37 P P P C8 N9 C4 DG DG DG 4 4 4 N 1 -11.10 1.60 120.90 109.80 P P P P O5' C5' DA DA DA 5 5 5 N 1 9.99 1.40 114.30 124.29 P P P N9 C1' C2' DA DA DA 5 5 5 N 1 2.99 0.40 105.80 108.79 P P P C8 N9 C4 DA DA DA 5 5 5 N 1 -3.72 0.60 118.60 114.88 P P P N1 C6 N6 DA DA DA 5 5 5 N 1 5.83 0.90 103.10 108.93 P P P C4' C3' C2' DT DT DT 6 6 6 N 1 4.99 0.50 106.80 111.79 P P P O4' C1' C2' DT DT DT 6 6 6 N 1 14.98 1.40 114.30 129.28 P P P N1 C1' C2' DT DT DT 6 6 6 N 1 1.95 0.30 108.30 110.25 P P P O4' C1' N1 DT DT DT 6 6 6 N 1 -3.63 0.60 127.20 123.57 P P P C2 N3 C4 DT DT DT 6 6 6 N 1 -7.31 0.70 108.00 100.69 P P P O4' C1' N9 DG DG DG 7 7 7 N 1 2.19 0.30 108.30 110.49 P P P O4' C1' N1 DC DC DC 8 8 8 N 1 -4.07 0.60 118.90 114.83 P P P N1 C2 O2 DC DC DC 8 8 8 N 1 9.26 1.20 110.70 119.96 P P P O5' P OP2 DG DG DG 9 9 9 N 1 4.10 0.40 106.40 110.50 P P P C8 N9 C4 DG DG DG 9 9 9 N 1 -10.91 0.90 105.70 94.79 P P P O5' P OP1 DT DT DT 10 10 10 N 1 -13.13 1.60 120.90 107.77 P P P P O5' C5' DT DT DT 10 10 10 N 1 3.05 0.50 106.80 109.85 P P P O4' C1' C2' DT DT DT 10 10 10 N 1 3.35 0.30 108.30 111.65 P P P O4' C1' N1 DT DT DT 10 10 10 N 1 4.94 0.60 119.90 124.84 P P P N3 C4 O4 DT DT DT 10 10 10 N 1 -8.01 0.70 124.90 116.89 P P P C5 C4 O4 DT DT DT 10 10 10 N 1 -8.70 0.60 119.00 110.30 P P P C4 C5 C7 DT DT DT 10 10 10 N 1 7.18 0.60 122.90 130.08 P P P C6 C5 C7 DT DT DT 10 10 10 N 1 -6.14 0.70 108.00 101.86 D D D O4' C1' N9 DG DG DG 1 1 1 N 1 -6.48 0.50 113.10 106.62 D D D N7 C8 N9 DG DG DG 1 1 1 N 1 6.04 0.40 106.40 112.44 D D D C8 N9 C4 DG DG DG 1 1 1 N 1 -2.60 0.40 105.40 102.80 D D D N9 C4 C5 DG DG DG 1 1 1 N 1 -6.34 0.90 105.70 99.36 D D D O5' P OP1 DT DT DT 2 2 2 N 1 -16.24 1.60 120.90 104.66 D D D P O5' C5' DT DT DT 2 2 2 N 1 4.99 0.60 119.00 123.99 D D D C4 C5 C7 DT DT DT 2 2 2 N 1 -4.53 0.60 122.90 118.37 D D D C6 C5 C7 DT DT DT 2 2 2 N 1 3.08 0.50 106.80 109.88 D D D O4' C1' C2' DG DG DG 4 4 4 N 1 4.41 0.30 108.30 112.71 D D D O4' C1' N9 DG DG DG 4 4 4 N 1 2.83 0.40 106.40 109.23 D D D C8 N9 C4 DG DG DG 4 4 4 N 1 -3.74 0.60 126.00 122.26 D D D N3 C4 N9 DG DG DG 4 4 4 N 1 -5.52 0.80 109.40 103.88 D D D O5' C5' C4' DG DG DG 5 5 5 N 1 -3.98 0.50 111.90 107.92 D D D C2 N3 C4 DG DG DG 5 5 5 N 1 3.07 0.50 128.60 131.67 D D D N3 C4 C5 DG DG DG 5 5 5 N 1 -4.26 0.50 113.10 108.84 D D D N7 C8 N9 DG DG DG 5 5 5 N 1 4.24 0.40 106.40 110.64 D D D C8 N9 C4 DG DG DG 5 5 5 N 1 9.77 1.50 119.30 129.07 A A A C N CA ALA PRO PRO 6 7 7 Y 1 23.93 2.70 111.00 134.93 A A A N CA C GLN GLN GLN 8 8 8 N 1 6.54 0.90 118.30 124.84 A A A CB CG OD1 ASP ASP ASP 17 17 17 N 1 -7.84 0.90 118.30 110.46 A A A CB CG OD2 ASP ASP ASP 17 17 17 N 1 5.32 0.60 121.00 126.32 A A A CB CG CD2 TYR TYR TYR 39 39 39 N 1 -4.73 0.60 121.00 116.27 A A A CB CG CD1 TYR TYR TYR 39 39 39 N 1 11.40 1.80 110.60 122.00 A A A N CA CB ARG ARG ARG 40 40 40 N 1 -9.24 1.40 112.40 103.16 A A A CA CB CG2 THR THR THR 67 67 67 N 1 6.43 0.90 118.30 124.73 A A A CB CG OD1 ASP ASP ASP 74 74 74 N 1 -7.59 0.90 118.30 110.71 A A A CB CG OD2 ASP ASP ASP 74 74 74 N 1 4.15 0.50 120.30 124.45 A A A NE CZ NH1 ARG ARG ARG 83 83 83 N 1 -4.09 0.50 120.30 116.21 A A A NE CZ NH2 ARG ARG ARG 83 83 83 N 1 -5.90 0.90 118.30 112.40 A A A CB CG OD1 ASP ASP ASP 91 91 91 N 1 -6.40 0.90 118.30 111.90 A A A CB CG OD1 ASP ASP ASP 92 92 92 N 1 -13.09 2.10 109.00 95.91 A A A CA CB OG1 THR THR THR 101 101 101 N 1 -4.25 0.50 120.30 116.05 A A A NE CZ NH2 ARG ARG ARG 102 102 102 N 1 11.75 1.50 110.50 122.25 A A A N CA CB SER SER SER 109 109 109 N 1 -8.80 1.40 110.10 101.30 A A A N CA CB ALA ALA ALA 110 110 110 N 1 4.13 0.50 120.30 124.43 A A A NE CZ NH1 ARG ARG ARG 126 126 126 N 1 -4.64 0.50 120.30 115.66 A A A NE CZ NH2 ARG ARG ARG 126 126 126 N 1 5.79 0.90 118.30 124.09 A A A CB CG OD1 ASP ASP ASP 130 130 130 N 1 -6.66 0.90 118.30 111.64 A A A CB CG OD2 ASP ASP ASP 130 130 130 N 1 -13.12 1.90 110.20 97.08 A A A CB CA C LEU LEU LEU 132 132 132 N 1 -12.50 2.00 110.40 97.90 A A A CB CA C LYS LYS LYS 148 148 148 N 1 -19.40 2.10 128.40 109.00 A A A C N CD ILE PRO PRO 150 151 151 Y 1 -6.85 0.90 118.30 111.45 A A A CB CG OD2 ASP ASP ASP 160 160 160 N 1 11.12 1.80 110.60 121.72 A A A N CA CB ASN ASN ASN 164 164 164 N 1 7.33 0.90 118.30 125.63 A A A CB CG OD1 ASP ASP ASP 170 170 170 N 1 -7.53 0.90 118.30 110.77 A A A CB CG OD2 ASP ASP ASP 170 170 170 N 1 -5.69 0.90 118.30 112.61 A A A CB CG OD2 ASP ASP ASP 190 190 190 N 1 5.84 0.90 118.30 124.14 A A A CB CG OD1 ASP ASP ASP 246 246 246 N 1 -6.17 0.90 118.30 112.13 A A A CB CG OD2 ASP ASP ASP 246 246 246 N 1 8.61 1.40 123.60 132.21 A A A CD NE CZ ARG ARG ARG 258 258 258 N 1 5.15 0.50 120.30 125.45 A A A NE CZ NH1 ARG ARG ARG 258 258 258 N 1 -3.64 0.50 120.30 116.66 A A A NE CZ NH2 ARG ARG ARG 258 258 258 N 1 -5.59 0.90 118.30 112.71 A A A CB CG OD1 ASP ASP ASP 276 276 276 N 1 -14.05 2.10 128.40 114.35 A A A C N CD LEU PRO PRO 311 312 312 Y 1 -6.87 0.90 118.30 111.43 A A A CB CG OD1 ASP ASP ASP 314 314 314 N 1 -5.59 0.90 118.30 112.71 A A A CB CG OD2 ASP ASP ASP 318 318 318 N 1 5.71 0.90 118.30 124.01 A A A CB CG OD1 ASP ASP ASP 321 321 321 N 1 -5.56 0.90 118.30 112.74 A A A CB CG OD2 ASP ASP ASP 321 321 321 N 1 -6.27 0.90 118.30 112.03 A A A CB CG OD1 ASP ASP ASP 332 332 332 N 1 T T C5 N7 DG DG 3 3 0.038 0.006 1.388 1.426 N 1 T T C5' C4' DA DA 4 4 0.043 0.007 1.512 1.555 N 1 T T N7 C8 DA DA 4 4 0.065 0.007 1.311 1.376 N 1 T T C6 N6 DA DA 4 4 0.061 0.008 1.335 1.396 N 1 T T O4' C1' DC DC 5 5 -0.077 0.012 1.418 1.341 N 1 T T N1 C6 DC DC 5 5 -0.054 0.006 1.367 1.313 N 1 T T N3 C4 DC DC 5 5 -0.056 0.007 1.335 1.279 N 1 T T C4 C5 DC DC 5 5 -0.054 0.008 1.425 1.371 N 1 T T O3' C3' DA DA 7 7 -0.046 0.006 1.419 1.373 N 1 T T O4' C4' DA DA 11 11 -0.076 0.010 1.446 1.370 N 1 T T O3' C3' DA DA 14 14 -0.073 0.006 1.419 1.346 N 1 T T C5' C4' DG DG 15 15 0.048 0.007 1.512 1.560 N 1 T T N3 C4 DG DG 15 15 -0.083 0.007 1.350 1.267 N 1 T T N3 C4 DC DC 16 16 -0.043 0.007 1.335 1.292 N 1 P P C5 C6 DG DG 1 1 -0.084 0.010 1.419 1.335 N 1 P P C5 N7 DG DG 1 1 -0.042 0.006 1.388 1.346 N 1 P P N9 C4 DG DG 1 1 -0.065 0.008 1.375 1.310 N 1 P P C5 N7 DG DG 4 4 0.039 0.006 1.388 1.427 N 1 P P C5 C6 DA DA 5 5 0.055 0.009 1.406 1.461 N 1 P P C5 N7 DA DA 5 5 0.044 0.006 1.388 1.432 N 1 P P O3' C3' DG DG 7 7 -0.089 0.006 1.419 1.330 N 1 P P C2 N3 DG DG 9 9 0.052 0.008 1.323 1.375 N 1 P P C5 N7 DG DG 9 9 0.067 0.006 1.388 1.455 N 1 P P C4 C5 DT DT 10 10 -0.089 0.009 1.445 1.356 N 1 D D P OP3 DG DG 1 1 -0.122 0.012 1.607 1.485 N 1 D D O3' C3' DG DG 1 1 0.089 0.013 1.435 1.524 N 1 D D C4 C5 DG DG 1 1 -0.051 0.007 1.379 1.328 N 1 D D C5 N7 DG DG 1 1 0.052 0.006 1.388 1.440 N 1 D D C5' C4' DC DC 3 3 0.049 0.007 1.512 1.561 N 1 D D O3' C3' DC DC 3 3 -0.048 0.006 1.419 1.371 N 1 D D N7 C8 DG DG 4 4 0.052 0.006 1.305 1.357 N 1 D D N7 C8 DG DG 5 5 0.043 0.006 1.305 1.348 N 1 A A CB CG GLU GLU 9 9 0.130 0.019 1.517 1.647 N 1 A A CD OE1 GLU GLU 21 21 0.067 0.011 1.252 1.319 N 1 A A CD OE1 GLU GLU 58 58 0.112 0.011 1.252 1.364 N 1 A A CD OE2 GLU GLU 71 71 0.077 0.011 1.252 1.329 N 1 A A CD OE1 GLU GLU 86 86 0.066 0.011 1.252 1.318 N 1 A A CD OE2 GLU GLU 129 129 0.080 0.011 1.252 1.332 N 1 A A CD OE2 GLU GLU 147 147 0.079 0.011 1.252 1.331 N 1 A A CD OE2 GLU GLU 153 153 0.068 0.011 1.252 1.320 N 1 A A CD OE2 GLU GLU 154 154 0.075 0.011 1.252 1.327 N 1 A A CD OE2 GLU GLU 165 165 0.067 0.011 1.252 1.319 N 1 A A CD OE2 GLU GLU 172 172 0.071 0.011 1.252 1.323 N 1 A A CD OE1 GLU GLU 203 203 0.071 0.011 1.252 1.323 N 1 A A CD OE2 GLU GLU 232 232 0.075 0.011 1.252 1.327 N 1 A A CD OE2 GLU GLU 335 335 0.066 0.011 1.252 1.318 N 1 A PRO 7 -85.10 -82.74 1 A GLN 8 47.31 -5.63 1 A GLU 9 -73.94 -76.42 1 A LEU 11 -77.96 -87.17 1 A LYS 27 -55.96 -81.13 1 A GLN 31 80.12 35.68 1 A ALA 32 -104.18 79.67 1 A ALA 38 -61.09 -71.15 1 A ALA 42 -50.66 -78.73 1 A TYR 49 -53.17 105.16 1 A PRO 50 -58.48 47.07 1 A LYS 81 -160.08 -161.94 1 A GLU 117 -68.02 21.76 1 A LYS 120 -163.64 12.09 1 A LYS 127 -86.55 32.53 1 A ASN 128 -160.96 13.49 1 A GLU 129 -39.72 -18.84 1 A LYS 131 -91.39 33.31 1 A LYS 141 -58.97 -93.47 1 A TYR 142 -60.80 31.57 1 A PHE 143 -45.50 -74.40 1 A ARG 152 -30.24 -28.67 1 A THR 176 -163.55 119.52 1 A ARG 183 -80.64 44.98 1 A ALA 185 -45.83 156.75 1 A SER 187 179.45 102.83 1 A SER 202 -38.19 -84.03 1 A GLU 203 -64.60 0.26 1 A VAL 221 -81.00 38.94 1 A HIS 222 41.60 22.95 1 A THR 225 -83.61 -81.52 1 A SER 229 179.16 157.48 1 A PRO 242 -52.66 103.40 1 A TYR 250 -63.03 -170.32 1 A TYR 265 -61.33 -84.98 1 A TYR 266 -27.30 -47.85 1 A THR 273 -47.85 -18.22 1 A ASN 294 -161.05 -149.60 1 A GLU 309 67.38 99.08 1 A SER 315 175.02 148.58 1 A TYR 327 -56.35 94.09 1 A ARG 333 -86.26 35.73 THE ENTIRE THUMB SUBDOMAIN (RESIDUES 261 - 335) IS MODELED WITH ONLY 0.5 OCCUPANCY DUE TO WEAK ELECTRON DENSITY. THERE IS NO OTHER PATTERN OF DENSITY WARRANTING A SECOND POSITION FOR THE THUMB SUBDOMAIN. 0.243 2.600 20.000 14702 14702 94.000 1 0.000 MOLECULAR REPLACEMENT PDB ENTRY 9ICJ TNT PROTGEO MOEWS 88.70 0.714 2.600 20.000 27 3333 2 651 2653 0.020 3474 0.550 3.000 4754 1.000 22.20 2027 1.000 0 0.013 74 1.000 0.007 432 10.00 7.000 3474 0.025 0.022 270 10.00 2.600 20.000 1BPZ 14702 0.000 0.000 0.073 1 2.900 94.000 2.600 2.690 0.344 95.60 data reduction DENZO data scaling SCALEPACK phasing MERLOT refinement TNT 5D HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N 6 N N 6 N N A GLY 13 D GLY 13 HELX_P A SER 30 D SER 30 1 A 18 A ILE 33 D ILE 33 HELX_P A LYS 48 D LYS 48 1 B 16 A GLY 56 D GLY 56 HELX_P A LYS 61 D LYS 61 1 C 6 A THR 67 D THR 67 HELX_P SEE REMARK 650 A THR 79 D THR 79 1 D 13 A ARG 83 D ARG 83 HELX_P A GLN 90 D GLN 90 1 E 8 A ASP 92 D ASP 92 HELX_P A ARG 102 D ARG 102 1 F 11 A PRO 108 D PRO 108 HELX_P SEE REMARK 650 A ASP 116 D ASP 116 1 G 9 A LEU 122 D LEU 122 HELX_P A LYS 127 D LYS 127 1 H 6 A HIS 134 D HIS 134 HELX_P A GLU 147 D GLU 147 1 I 14 A ARG 152 D ARG 152 HELX_P A VAL 169 D VAL 169 1 J 18 A SER 180 D SER 180 HELX_P A ARG 183 D ARG 183 1 K 4 A PRO 208 D PRO 208 HELX_P A LYS 220 D LYS 220 1 L 13 A LYS 262 D LYS 262 HELX_P A THR 273 D THR 273 1 M 12 A ASP 276 D ASP 276 HELX_P A GLU 288 D GLU 288 1 N 13 A GLU 316 D GLU 316 HELX_P A ILE 323 D ILE 323 1 O 8 A PRO 330 D PRO 330 HELX_P A ASP 332 D ASP 332 5 P 3 metalc 2.434 P DG 9 B OP1 DG 9 1_555 A NA 341 E NA NA 1_555 metalc 2.936 D DC 3 C OP1 DC 3 1_555 A NA 342 F NA NA 1_555 metalc 2.276 A LYS 60 D O LYS 60 1_555 A NA 342 F NA NA 1_555 metalc 2.231 A LEU 62 D O LEU 62 1_555 A NA 342 F NA NA 1_555 metalc 2.461 A VAL 65 D O VAL 65 1_555 A NA 342 F NA NA 1_555 metalc 2.215 A THR 101 D O THR 101 1_555 A NA 341 E NA NA 1_555 metalc 2.724 A VAL 103 D O VAL 103 1_555 A NA 341 E NA NA 1_555 metalc 2.094 A ILE 106 D O ILE 106 1_555 A NA 341 E NA NA 1_555 metalc 2.193 A NA 341 E NA NA 1_555 A HOH 500 J O HOH 1_555 metalc 2.103 A NA 342 F NA NA 1_555 A HOH 502 J O HOH 1_555 hydrog WATSON-CRICK T DC 1 A N3 DC 1 1_555 D DG 5 C N1 DG 5 1_555 hydrog WATSON-CRICK T DC 1 A N4 DC 1 1_555 D DG 5 C O6 DG 5 1_555 hydrog WATSON-CRICK T DC 1 A O2 DC 1 1_555 D DG 5 C N2 DG 5 1_555 hydrog WATSON-CRICK T DC 2 A N3 DC 2 1_555 D DG 4 C N1 DG 4 1_555 hydrog WATSON-CRICK T DC 2 A N4 DC 2 1_555 D DG 4 C O6 DG 4 1_555 hydrog WATSON-CRICK T DC 2 A O2 DC 2 1_555 D DG 4 C N2 DG 4 1_555 hydrog WATSON-CRICK T DG 3 A N1 DG 3 1_555 D DC 3 C N3 DC 3 1_555 hydrog WATSON-CRICK T DG 3 A N2 DG 3 1_555 D DC 3 C O2 DC 3 1_555 hydrog WATSON-CRICK T DG 3 A O6 DG 3 1_555 D DC 3 C N4 DC 3 1_555 hydrog WATSON-CRICK T DA 4 A N1 DA 4 1_555 D DT 2 C N3 DT 2 1_555 hydrog WATSON-CRICK T DA 4 A N6 DA 4 1_555 D DT 2 C O4 DT 2 1_555 hydrog WATSON-CRICK T DC 5 A N3 DC 5 1_555 D DG 1 C N1 DG 1 1_555 hydrog WATSON-CRICK T DC 5 A N4 DC 5 1_555 D DG 1 C O6 DG 1 1_555 hydrog WATSON-CRICK T DC 5 A O2 DC 5 1_555 D DG 1 C N2 DG 1 1_555 hydrog WATSON-CRICK T DC 6 A N3 DC 6 1_555 P DG 11 B N1 DG 11 1_555 hydrog WATSON-CRICK T DC 6 A N4 DC 6 1_555 P DG 11 B O6 DG 11 1_555 hydrog WATSON-CRICK T DC 6 A O2 DC 6 1_555 P DG 11 B N2 DG 11 1_555 hydrog WATSON-CRICK T DA 7 A N1 DA 7 1_555 P DT 10 B N3 DT 10 1_555 hydrog WATSON-CRICK T DA 7 A N6 DA 7 1_555 P DT 10 B O4 DT 10 1_555 hydrog WATSON-CRICK T DC 8 A N3 DC 8 1_555 P DG 9 B N1 DG 9 1_555 hydrog WATSON-CRICK T DC 8 A N4 DC 8 1_555 P DG 9 B O6 DG 9 1_555 hydrog WATSON-CRICK T DC 8 A O2 DC 8 1_555 P DG 9 B N2 DG 9 1_555 hydrog WATSON-CRICK T DG 9 A N1 DG 9 1_555 P DC 8 B N3 DC 8 1_555 hydrog WATSON-CRICK T DG 9 A N2 DG 9 1_555 P DC 8 B O2 DC 8 1_555 hydrog WATSON-CRICK T DG 9 A O6 DG 9 1_555 P DC 8 B N4 DC 8 1_555 hydrog WATSON-CRICK T DC 10 A N3 DC 10 1_555 P DG 7 B N1 DG 7 1_555 hydrog WATSON-CRICK T DC 10 A N4 DC 10 1_555 P DG 7 B O6 DG 7 1_555 hydrog WATSON-CRICK T DC 10 A O2 DC 10 1_555 P DG 7 B N2 DG 7 1_555 hydrog WATSON-CRICK T DA 11 A N1 DA 11 1_555 P DT 6 B N3 DT 6 1_555 hydrog WATSON-CRICK T DA 11 A N6 DA 11 1_555 P DT 6 B O4 DT 6 1_555 hydrog WATSON-CRICK T DT 12 A N3 DT 12 1_555 P DA 5 B N1 DA 5 1_555 hydrog WATSON-CRICK T DT 12 A O4 DT 12 1_555 P DA 5 B N6 DA 5 1_555 hydrog WATSON-CRICK T DC 13 A N3 DC 13 1_555 P DG 4 B N1 DG 4 1_555 hydrog WATSON-CRICK T DC 13 A N4 DC 13 1_555 P DG 4 B O6 DG 4 1_555 hydrog WATSON-CRICK T DC 13 A O2 DC 13 1_555 P DG 4 B N2 DG 4 1_555 hydrog WATSON-CRICK T DA 14 A N1 DA 14 1_555 P DT 3 B N3 DT 3 1_555 hydrog WATSON-CRICK T DA 14 A N6 DA 14 1_555 P DT 3 B O4 DT 3 1_555 hydrog WATSON-CRICK T DG 15 A N1 DG 15 1_555 P DC 2 B N3 DC 2 1_555 hydrog WATSON-CRICK T DG 15 A N2 DG 15 1_555 P DC 2 B O2 DC 2 1_555 hydrog WATSON-CRICK T DG 15 A O6 DG 15 1_555 P DC 2 B N4 DC 2 1_555 hydrog WATSON-CRICK T DC 16 A N3 DC 16 1_555 P DG 1 B N1 DG 1 1_555 hydrog WATSON-CRICK T DC 16 A N4 DC 16 1_555 P DG 1 B O6 DG 1 1_555 hydrog WATSON-CRICK T DC 16 A O2 DC 16 1_555 P DG 1 B N2 DG 1 1_555 TRANSFERASE/DNA NUCLEOTIDYLTRANSFERASE, DNA REPAIR, BASE EXCISION REPAIR PATHWAY, TRANSFERASE-DNA COMPLEX A GLY 274 D GLY 274 1 A SER 275 D SER 275 0.48 DPOB_HUMAN UNP 4 1 P06746 1BPZ PDB 1 1BPZ 1BPZ PDB 2 1BPZ 1BPZ PDB 3 1BPZ 1 334 1BPZ 2 335 P06746 A 1 2 335 1 16 1BPZ 1 16 1BPZ T 2 1 16 1 11 1BPZ 1 11 1BPZ P 3 1 11 1 5 1BPZ 1 5 1BPZ D 4 1 5 2 5 2 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A ILE 150 D ILE 150 A PRO 151 D PRO 151 A SER 187 D SER 187 A SER 188 D SER 188 A ILE 174 D ILE 174 A CYS 178 D CYS 178 A MET 191 D MET 191 A THR 196 D THR 196 A ARG 253 D ARG 253 A ARG 258 D ARG 258 A LYS 234 D LYS 234 A CYS 239 D CYS 239 A SER 229 D SER 229 A GLY 231 D GLY 231 A PHE 291 D PHE 291 A ASN 294 D ASN 294 A THR 297 D THR 297 A PRO 300 D PRO 300 Unknown 3 BINDING SITE FOR RESIDUE NA A 341 A NA 341 Software 5 BINDING SITE FOR RESIDUE NA A 342 A NA 342 Software 5 A ASP 190 D ASP 190 3 1_555 A ASP 192 D ASP 192 3 1_555 A ASP 256 D ASP 256 3 1_555 A THR 101 D THR 101 5 1_555 A VAL 103 D VAL 103 5 1_555 A ILE 106 D ILE 106 5 1_555 A HOH 500 J HOH 5 1_555 P DG 9 B DG 9 5 1_555 A LYS 60 D LYS 60 5 1_555 A LEU 62 D LEU 62 5 1_555 A VAL 65 D VAL 65 5 1_555 A HOH 502 J HOH 5 1_555 D DC 3 C DC 3 5 1_555 4 P 1 21 1