0.018679
0.000000
0.005904
0.000000
0.012714
0.000000
0.000000
0.000000
0.019202
0.00000
0.00000
0.00000
Sawaya, M.R.
Prasad, R.
Wilson, S.H.
Kraut, J.
Pelletier, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
107.54
90.00
53.535
78.656
54.618
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
36
11205
11215
10.1021/bi9703812
9287163
Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism.
1997
US
Biochemistry
BICHAW
0033
0006-2960
35
12778
Characterization of the Metal Ion Binding Helix-Hairpin-Helix Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis
1996
US
Biochemistry
BICHAW
0033
0006-2960
35
12762
A Structural Basis for Metal Ion Mutagenicity and Nucleotide Selectivity in Human DNA Polymerase Beta
1996
US
Biochemistry
BICHAW
0033
0006-2960
35
12742
Crystal Structures of Human DNA Polymerase Beta Complexed with DNA: Implications for Catalytic Mechanism, Processivity, and Fidelity
1996
US
Science
SCIEAS
0038
0036-8075
264
1930
Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism
1994
US
Science
SCIEAS
0038
0036-8075
264
1891
Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP
1994
10.2210/pdb1bpz/pdb
pdb_00001bpz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.00
1
MIRRORS
IMAGE PLATE
1996-11-15
MARRESEARCH
SI(111) CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL7-1
SSRL
SYNCHROTRON
SSRL BEAMLINE BL7-1
4813.134
DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')
1
syn
polymer
3405.220
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3')
1
syn
polymer
1536.035
DNA (5'-D(*GP*TP*CP*GP*G)-3')
1
syn
polymer
38241.672
PROTEIN (DNA POLYMERASE BETA)
2.7.7.7
1
man
polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
27
nat
water
POL BETA, BETA-POL
no
no
(DC)(DC)(DG)(DA)(DC)(DC)(DA)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)
CCGACCACGCATCAGC
T
polydeoxyribonucleotide
no
no
(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DT)(DG)
GCTGATGCGTG
P
polydeoxyribonucleotide
no
no
(DG)(DT)(DC)(DG)(DG)
GTCGG
D
polydeoxyribonucleotide
no
no
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
NUCLEUS
9606
Homo sapiens
562
Escherichia coli
1
2.10
41.4000
VAPOR DIFFUSION
7.0
PROTEIN-DNA COMPLEX WAS CRYSTALLIZED USING A RESERVOIR CONTAINING 17.5% PEG 3350, 90 MM SODIUM ACETATE, AND 50 MM IMIDAZOLE, PH 7.0., VAPOR DIFFUSION
-0.101
1
19
T
1
D
5
-0.143
T_DC1:DG5_D
1
-2.440
-0.252
0.130
-0.122
-2.951
1
19
T
2
D
4
-0.041
T_DC2:DG4_D
2
0.142
0.492
0.147
-0.303
-0.597
1
19
T
3
D
3
-5.502
T_DG3:DC3_D
3
-2.945
-0.299
-0.029
-0.174
0.191
1
20
T
4
D
2
1.782
T_DA4:DT2_D
4
-1.021
-0.076
-0.016
-0.095
1.192
1
19
T
5
D
1
-0.415
T_DC5:DG1_D
5
-0.591
-0.528
-0.093
-0.062
-2.074
1
19
T
6
P
11
1.966
T_DC6:DG11_P
6
0.037
-0.184
0.082
-0.052
-0.910
1
20
T
7
P
10
-8.142
T_DA7:DT10_P
7
-3.831
0.183
-0.126
-0.089
2.547
1
19
T
8
P
9
-1.251
T_DC8:DG9_P
8
-3.038
0.341
-0.048
-0.079
1.677
1
19
T
9
P
8
-2.488
T_DG9:DC8_P
9
-0.835
0.449
0.094
-0.194
0.815
1
19
T
10
P
7
-2.953
T_DC10:DG7_P
10
-0.661
-0.580
0.083
-0.184
1.057
1
20
T
11
P
6
-9.926
T_DA11:DT6_P
11
-2.022
-0.022
0.108
-0.038
-1.273
1
20
T
12
P
5
-0.251
T_DT12:DA5_P
12
-2.399
-0.217
0.135
0.038
0.499
1
19
T
13
P
4
-1.660
T_DC13:DG4_P
13
-4.175
0.527
0.029
-0.218
-0.062
1
20
T
14
P
3
-1.978
T_DA14:DT3_P
14
-3.866
-0.760
-0.081
-0.336
-0.112
1
19
T
15
P
2
3.341
T_DG15:DC2_P
15
-2.702
0.236
-0.031
-0.056
1.226
1
19
T
16
P
1
-0.715
T_DC16:DG1_P
16
-2.441
-0.253
-0.010
-0.229
3.479
39.762
T
T
1
2
3.478
D
D
5
4
3.475
2.365
0.836
0.129
TT_DC1DC2:DG4DG5_DD
1
0.125
-0.184
39.694
-0.102
-1.213
3.189
32.656
T
T
2
3
-1.113
D
D
4
3
3.117
-0.625
-1.136
0.393
TT_DC2DG3:DC3DG4_DD
2
-2.645
4.710
32.546
0.804
1.577
3.311
38.169
T
T
3
4
3.767
D
D
3
2
3.320
2.461
-0.273
-0.165
TT_DG3DA4:DT2DC3_DD
3
-1.477
2.261
38.065
-0.567
0.229
3.380
23.466
T
T
4
5
-0.132
D
D
2
1
3.379
-0.054
0.524
-0.332
TT_DA4DC5:DG1DT2_DD
4
0.039
-0.095
23.466
-0.797
-1.275
4.032
30.128
T
T
6
7
8.329
P
P
11
10
3.973
4.312
-0.400
0.961
TT_DC6DA7:DT10DG11_PP
5
2.060
-3.979
29.756
0.764
1.287
3.310
28.894
T
T
7
8
4.334
P
P
10
9
3.370
2.160
1.070
-0.554
TT_DA7DC8:DG9DT10_PP
6
-0.258
0.518
28.814
-1.600
-2.203
3.444
40.812
T
T
8
9
18.192
P
P
9
8
3.484
12.492
-0.915
0.238
TT_DC8DG9:DC8DG9_PP
7
-2.322
3.381
38.864
-1.155
1.034
3.004
20.967
T
T
9
10
14.070
P
P
8
7
3.235
5.051
-0.280
-0.596
TT_DG9DC10:DG7DC8_PP
8
-3.125
8.703
20.117
-3.725
-0.521
3.061
46.140
T
T
10
11
9.354
P
P
7
6
3.164
7.303
-0.222
-0.487
TT_DC10DA11:DT6DG7_PP
9
-1.320
1.691
45.571
-1.220
0.175
3.377
32.448
T
T
11
12
-8.103
P
P
6
5
3.355
-4.514
0.396
-0.395
TT_DA11DT12:DA5DT6_PP
10
-0.034
0.060
32.140
0.113
-0.714
3.077
38.852
T
T
12
13
0.486
P
P
5
4
3.089
0.323
0.122
-0.369
TT_DT12DC13:DG4DA5_PP
11
-1.841
2.769
38.808
-0.592
-0.394
3.067
33.500
T
T
13
14
14.225
P
P
4
3
3.167
8.113
-0.568
-0.193
TT_DC13DA14:DT3DG4_PP
12
-2.733
4.791
32.418
-1.629
0.550
3.416
34.886
T
T
14
15
-3.553
P
P
3
2
3.414
-2.127
0.389
-0.592
TT_DA14DG15:DC2DT3_PP
13
-2.002
3.343
34.767
-0.650
-0.966
3.216
29.301
T
T
15
16
4.739
P
P
2
1
3.257
2.394
0.015
-0.376
TT_DG15DC16:DG1DC2_PP
14
-0.692
1.370
29.197
-1.255
-0.178
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1997-06-16
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
NDB
1997-04-14
REL
REL
NA
SODIUM ION
HOH
water
THE 5'-TERMINUS OF G D 1 IS PHOSPHORYLATED.
9ICJ
PDB ENTRY 9ICJ
PDB
experimental model
NA
341
5
NA
NA
341
A
NA
342
5
NA
NA
342
A
HOH
509
6
HOH
HOH
509
T
HOH
513
6
HOH
HOH
513
T
HOH
519
6
HOH
HOH
519
T
HOH
522
6
HOH
HOH
522
T
HOH
523
6
HOH
HOH
523
T
HOH
524
6
HOH
HOH
524
T
HOH
506
6
HOH
HOH
506
P
HOH
508
6
HOH
HOH
508
P
HOH
515
6
HOH
HOH
515
P
HOH
521
6
HOH
HOH
521
P
HOH
525
6
HOH
HOH
525
P
HOH
527
6
HOH
HOH
527
P
HOH
514
6
HOH
HOH
514
D
HOH
500
6
HOH
HOH
500
A
HOH
501
6
HOH
HOH
501
A
HOH
502
6
HOH
HOH
502
A
HOH
504
6
HOH
HOH
504
A
HOH
505
6
HOH
HOH
505
A
HOH
507
6
HOH
HOH
507
A
HOH
510
6
HOH
HOH
510
A
HOH
511
6
HOH
HOH
511
A
HOH
512
6
HOH
HOH
512
A
HOH
516
6
HOH
HOH
516
A
HOH
517
6
HOH
HOH
517
A
HOH
518
6
HOH
HOH
518
A
HOH
520
6
HOH
HOH
520
A
HOH
526
6
HOH
HOH
526
A
C
1
n
1
DC
1
T
C
2
n
2
DC
2
T
G
3
n
3
DG
3
T
A
4
n
4
DA
4
T
C
5
n
5
DC
5
T
C
6
n
6
DC
6
T
A
7
n
7
DA
7
T
C
8
n
8
DC
8
T
G
9
n
9
DG
9
T
C
10
n
10
DC
10
T
A
11
n
11
DA
11
T
T
12
n
12
DT
12
T
C
13
n
13
DC
13
T
A
14
n
14
DA
14
T
G
15
n
15
DG
15
T
C
16
n
16
DC
16
T
G
1
n
1
DG
1
P
C
2
n
2
DC
2
P
T
3
n
3
DT
3
P
G
4
n
4
DG
4
P
A
5
n
5
DA
5
P
T
6
n
6
DT
6
P
G
7
n
7
DG
7
P
C
8
n
8
DC
8
P
G
9
n
9
DG
9
P
T
10
n
10
DT
10
P
G
11
n
11
DG
11
P
G
1
n
1
DG
1
D
T
2
n
2
DT
2
D
C
3
n
3
DC
3
D
G
4
n
4
DG
4
D
G
5
n
5
DG
5
D
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
LYS
5
n
5
LYS
5
A
ALA
6
n
6
ALA
6
A
PRO
7
n
7
PRO
7
A
GLN
8
n
8
GLN
8
A
GLU
9
n
9
GLU
9
A
THR
10
n
10
THR
10
A
LEU
11
n
11
LEU
11
A
ASN
12
n
12
ASN
12
A
GLY
13
n
13
GLY
13
A
GLY
14
n
14
GLY
14
A
ILE
15
n
15
ILE
15
A
THR
16
n
16
THR
16
A
ASP
17
n
17
ASP
17
A
MET
18
n
18
MET
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
ALA
23
n
23
ALA
23
A
ASN
24
n
24
ASN
24
A
PHE
25
n
25
PHE
25
A
GLU
26
n
26
GLU
26
A
LYS
27
n
27
LYS
27
A
ASN
28
n
28
ASN
28
A
VAL
29
n
29
VAL
29
A
SER
30
n
30
SER
30
A
GLN
31
n
31
GLN
31
A
ALA
32
n
32
ALA
32
A
ILE
33
n
33
ILE
33
A
HIS
34
n
34
HIS
34
A
LYS
35
n
35
LYS
35
A
TYR
36
n
36
TYR
36
A
ASN
37
n
37
ASN
37
A
ALA
38
n
38
ALA
38
A
TYR
39
n
39
TYR
39
A
ARG
40
n
40
ARG
40
A
LYS
41
n
41
LYS
41
A
ALA
42
n
42
ALA
42
A
ALA
43
n
43
ALA
43
A
SER
44
n
44
SER
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
PRO
50
n
50
PRO
50
A
HIS
51
n
51
HIS
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
GLY
56
n
56
GLY
56
A
ALA
57
n
57
ALA
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
LYS
61
n
61
LYS
61
A
LEU
62
n
62
LEU
62
A
PRO
63
n
63
PRO
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
GLY
66
n
66
GLY
66
A
THR
67
n
67
THR
67
A
LYS
68
n
68
LYS
68
A
ILE
69
n
69
ILE
69
A
ALA
70
n
70
ALA
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
GLU
75
n
75
GLU
75
A
PHE
76
n
76
PHE
76
A
LEU
77
n
77
LEU
77
A
ALA
78
n
78
ALA
78
A
THR
79
n
79
THR
79
A
GLY
80
n
80
GLY
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
ILE
88
n
88
ILE
88
A
ARG
89
n
89
ARG
89
A
GLN
90
n
90
GLN
90
A
ASP
91
n
91
ASP
91
A
ASP
92
n
92
ASP
92
A
THR
93
n
93
THR
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
SER
96
n
96
SER
96
A
ILE
97
n
97
ILE
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
LEU
100
n
100
LEU
100
A
THR
101
n
101
THR
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
SER
104
n
104
SER
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
GLY
107
n
107
GLY
107
A
PRO
108
n
108
PRO
108
A
SER
109
n
109
SER
109
A
ALA
110
n
110
ALA
110
A
ALA
111
n
111
ALA
111
A
ARG
112
n
112
ARG
112
A
LYS
113
n
113
LYS
113
A
PHE
114
n
114
PHE
114
A
VAL
115
n
115
VAL
115
A
ASP
116
n
116
ASP
116
A
GLU
117
n
117
GLU
117
A
GLY
118
n
118
GLY
118
A
ILE
119
n
119
ILE
119
A
LYS
120
n
120
LYS
120
A
THR
121
n
121
THR
121
A
LEU
122
n
122
LEU
122
A
GLU
123
n
123
GLU
123
A
ASP
124
n
124
ASP
124
A
LEU
125
n
125
LEU
125
A
ARG
126
n
126
ARG
126
A
LYS
127
n
127
LYS
127
A
ASN
128
n
128
ASN
128
A
GLU
129
n
129
GLU
129
A
ASP
130
n
130
ASP
130
A
LYS
131
n
131
LYS
131
A
LEU
132
n
132
LEU
132
A
ASN
133
n
133
ASN
133
A
HIS
134
n
134
HIS
134
A
HIS
135
n
135
HIS
135
A
GLN
136
n
136
GLN
136
A
ARG
137
n
137
ARG
137
A
ILE
138
n
138
ILE
138
A
GLY
139
n
139
GLY
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
TYR
142
n
142
TYR
142
A
PHE
143
n
143
PHE
143
A
GLY
144
n
144
GLY
144
A
ASP
145
n
145
ASP
145
A
PHE
146
n
146
PHE
146
A
GLU
147
n
147
GLU
147
A
LYS
148
n
148
LYS
148
A
ARG
149
n
149
ARG
149
A
ILE
150
n
150
ILE
150
A
PRO
151
n
151
PRO
151
A
ARG
152
n
152
ARG
152
A
GLU
153
n
153
GLU
153
A
GLU
154
n
154
GLU
154
A
MET
155
n
155
MET
155
A
LEU
156
n
156
LEU
156
A
GLN
157
n
157
GLN
157
A
MET
158
n
158
MET
158
A
GLN
159
n
159
GLN
159
A
ASP
160
n
160
ASP
160
A
ILE
161
n
161
ILE
161
A
VAL
162
n
162
VAL
162
A
LEU
163
n
163
LEU
163
A
ASN
164
n
164
ASN
164
A
GLU
165
n
165
GLU
165
A
VAL
166
n
166
VAL
166
A
LYS
167
n
167
LYS
167
A
LYS
168
n
168
LYS
168
A
VAL
169
n
169
VAL
169
A
ASP
170
n
170
ASP
170
A
SER
171
n
171
SER
171
A
GLU
172
n
172
GLU
172
A
TYR
173
n
173
TYR
173
A
ILE
174
n
174
ILE
174
A
ALA
175
n
175
ALA
175
A
THR
176
n
176
THR
176
A
VAL
177
n
177
VAL
177
A
CYS
178
n
178
CYS
178
A
GLY
179
n
179
GLY
179
A
SER
180
n
180
SER
180
A
PHE
181
n
181
PHE
181
A
ARG
182
n
182
ARG
182
A
ARG
183
n
183
ARG
183
A
GLY
184
n
184
GLY
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
SER
187
n
187
SER
187
A
SER
188
n
188
SER
188
A
GLY
189
n
189
GLY
189
A
ASP
190
n
190
ASP
190
A
MET
191
n
191
MET
191
A
ASP
192
n
192
ASP
192
A
VAL
193
n
193
VAL
193
A
LEU
194
n
194
LEU
194
A
LEU
195
n
195
LEU
195
A
THR
196
n
196
THR
196
A
HIS
197
n
197
HIS
197
A
PRO
198
n
198
PRO
198
A
SER
199
n
199
SER
199
A
PHE
200
n
200
PHE
200
A
THR
201
n
201
THR
201
A
SER
202
n
202
SER
202
A
GLU
203
n
203
GLU
203
A
SER
204
n
204
SER
204
A
THR
205
n
205
THR
205
A
LYS
206
n
206
LYS
206
A
GLN
207
n
207
GLN
207
A
PRO
208
n
208
PRO
208
A
LYS
209
n
209
LYS
209
A
LEU
210
n
210
LEU
210
A
LEU
211
n
211
LEU
211
A
HIS
212
n
212
HIS
212
A
GLN
213
n
213
GLN
213
A
VAL
214
n
214
VAL
214
A
VAL
215
n
215
VAL
215
A
GLU
216
n
216
GLU
216
A
GLN
217
n
217
GLN
217
A
LEU
218
n
218
LEU
218
A
GLN
219
n
219
GLN
219
A
LYS
220
n
220
LYS
220
A
VAL
221
n
221
VAL
221
A
HIS
222
n
222
HIS
222
A
PHE
223
n
223
PHE
223
A
ILE
224
n
224
ILE
224
A
THR
225
n
225
THR
225
A
ASP
226
n
226
ASP
226
A
THR
227
n
227
THR
227
A
LEU
228
n
228
LEU
228
A
SER
229
n
229
SER
229
A
LYS
230
n
230
LYS
230
A
GLY
231
n
231
GLY
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
LYS
234
n
234
LYS
234
A
PHE
235
n
235
PHE
235
A
MET
236
n
236
MET
236
A
GLY
237
n
237
GLY
237
A
VAL
238
n
238
VAL
238
A
CYS
239
n
239
CYS
239
A
GLN
240
n
240
GLN
240
A
LEU
241
n
241
LEU
241
A
PRO
242
n
242
PRO
242
A
SER
243
n
243
SER
243
A
LYS
244
n
244
LYS
244
A
ASN
245
n
245
ASN
245
A
ASP
246
n
246
ASP
246
A
GLU
247
n
247
GLU
247
A
LYS
248
n
248
LYS
248
A
GLU
249
n
249
GLU
249
A
TYR
250
n
250
TYR
250
A
PRO
251
n
251
PRO
251
A
HIS
252
n
252
HIS
252
A
ARG
253
n
253
ARG
253
A
ARG
254
n
254
ARG
254
A
ILE
255
n
255
ILE
255
A
ASP
256
n
256
ASP
256
A
ILE
257
n
257
ILE
257
A
ARG
258
n
258
ARG
258
A
LEU
259
n
259
LEU
259
A
ILE
260
n
260
ILE
260
A
PRO
261
n
261
PRO
261
A
LYS
262
n
262
LYS
262
A
ASP
263
n
263
ASP
263
A
GLN
264
n
264
GLN
264
A
TYR
265
n
265
TYR
265
A
TYR
266
n
266
TYR
266
A
CYS
267
n
267
CYS
267
A
GLY
268
n
268
GLY
268
A
VAL
269
n
269
VAL
269
A
LEU
270
n
270
LEU
270
A
TYR
271
n
271
TYR
271
A
PHE
272
n
272
PHE
272
A
THR
273
n
273
THR
273
A
GLY
274
n
274
GLY
274
A
SER
275
n
275
SER
275
A
ASP
276
n
276
ASP
276
A
ILE
277
n
277
ILE
277
A
PHE
278
n
278
PHE
278
A
ASN
279
n
279
ASN
279
A
LYS
280
n
280
LYS
280
A
ASN
281
n
281
ASN
281
A
MET
282
n
282
MET
282
A
ARG
283
n
283
ARG
283
A
ALA
284
n
284
ALA
284
A
HIS
285
n
285
HIS
285
A
ALA
286
n
286
ALA
286
A
LEU
287
n
287
LEU
287
A
GLU
288
n
288
GLU
288
A
LYS
289
n
289
LYS
289
A
GLY
290
n
290
GLY
290
A
PHE
291
n
291
PHE
291
A
THR
292
n
292
THR
292
A
ILE
293
n
293
ILE
293
A
ASN
294
n
294
ASN
294
A
GLU
295
n
295
GLU
295
A
TYR
296
n
296
TYR
296
A
THR
297
n
297
THR
297
A
ILE
298
n
298
ILE
298
A
ARG
299
n
299
ARG
299
A
PRO
300
n
300
PRO
300
A
LEU
301
n
301
LEU
301
A
GLY
302
n
302
GLY
302
A
VAL
303
n
303
VAL
303
A
THR
304
n
304
THR
304
A
GLY
305
n
305
GLY
305
A
VAL
306
n
306
VAL
306
A
ALA
307
n
307
ALA
307
A
GLY
308
n
308
GLY
308
A
GLU
309
n
309
GLU
309
A
PRO
310
n
310
PRO
310
A
LEU
311
n
311
LEU
311
A
PRO
312
n
312
PRO
312
A
VAL
313
n
313
VAL
313
A
ASP
314
n
314
ASP
314
A
SER
315
n
315
SER
315
A
GLU
316
n
316
GLU
316
A
LYS
317
n
317
LYS
317
A
ASP
318
n
318
ASP
318
A
ILE
319
n
319
ILE
319
A
PHE
320
n
320
PHE
320
A
ASP
321
n
321
ASP
321
A
TYR
322
n
322
TYR
322
A
ILE
323
n
323
ILE
323
A
GLN
324
n
324
GLN
324
A
TRP
325
n
325
TRP
325
A
LYS
326
n
326
LYS
326
A
TYR
327
n
327
TYR
327
A
ARG
328
n
328
ARG
328
A
GLU
329
n
329
GLU
329
A
PRO
330
n
330
PRO
330
A
LYS
331
n
331
LYS
331
A
ASP
332
n
332
ASP
332
A
ARG
333
n
333
ARG
333
A
SER
334
n
334
SER
334
A
GLU
335
n
335
GLU
335
A
0.243
author_defined_assembly
4
tetrameric
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
E
NA
NA
1_555
A
THR
101
D
O
THR
101
1_555
151.7
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
E
NA
NA
1_555
A
VAL
103
D
O
VAL
103
1_555
89.4
A
THR
101
D
O
THR
101
1_555
A
NA
341
E
NA
NA
1_555
A
VAL
103
D
O
VAL
103
1_555
78.4
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
E
NA
NA
1_555
A
ILE
106
D
O
ILE
106
1_555
86.2
A
THR
101
D
O
THR
101
1_555
A
NA
341
E
NA
NA
1_555
A
ILE
106
D
O
ILE
106
1_555
119.1
A
VAL
103
D
O
VAL
103
1_555
A
NA
341
E
NA
NA
1_555
A
ILE
106
D
O
ILE
106
1_555
91.1
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
E
NA
NA
1_555
A
HOH
500
J
O
HOH
1_555
78.1
A
THR
101
D
O
THR
101
1_555
A
NA
341
E
NA
NA
1_555
A
HOH
500
J
O
HOH
1_555
76.1
A
VAL
103
D
O
VAL
103
1_555
A
NA
341
E
NA
NA
1_555
A
HOH
500
J
O
HOH
1_555
88.1
A
ILE
106
D
O
ILE
106
1_555
A
NA
341
E
NA
NA
1_555
A
HOH
500
J
O
HOH
1_555
164.3
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
F
NA
NA
1_555
A
LYS
60
D
O
LYS
60
1_555
152.9
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
F
NA
NA
1_555
A
LEU
62
D
O
LEU
62
1_555
74.2
A
LYS
60
D
O
LYS
60
1_555
A
NA
342
F
NA
NA
1_555
A
LEU
62
D
O
LEU
62
1_555
81.0
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
F
NA
NA
1_555
A
VAL
65
D
O
VAL
65
1_555
69.9
A
LYS
60
D
O
LYS
60
1_555
A
NA
342
F
NA
NA
1_555
A
VAL
65
D
O
VAL
65
1_555
99.3
A
LEU
62
D
O
LEU
62
1_555
A
NA
342
F
NA
NA
1_555
A
VAL
65
D
O
VAL
65
1_555
89.0
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
F
NA
NA
1_555
A
HOH
502
J
O
HOH
1_555
72.9
A
LYS
60
D
O
LYS
60
1_555
A
NA
342
F
NA
NA
1_555
A
HOH
502
J
O
HOH
1_555
105.7
A
LEU
62
D
O
LEU
62
1_555
A
NA
342
F
NA
NA
1_555
A
HOH
502
J
O
HOH
1_555
63.7
A
VAL
65
D
O
VAL
65
1_555
A
NA
342
F
NA
NA
1_555
A
HOH
502
J
O
HOH
1_555
138.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
150
D
O
ILE
150
A
N
SER
188
D
N
SER
188
A
O
ILE
174
D
O
ILE
174
A
N
THR
196
D
N
THR
196
A
O
MET
191
D
O
MET
191
A
N
ASP
256
D
N
ASP
256
A
O
ARG
253
D
O
ARG
253
A
N
CYS
239
D
N
CYS
239
A
N
MET
236
D
N
MET
236
A
O
SER
229
D
O
SER
229
A
O
THR
292
D
O
THR
292
A
N
ARG
299
D
N
ARG
299
1
A
MET
1
D
MET
1
1
Y
1
A
SER
2
D
SER
2
1
Y
1
A
LYS
3
D
LYS
3
1
Y
1
A
ARG
4
D
ARG
4
1
Y
1
A
CA
ASN
164
PLANAR
1
-6.38
0.70
108.00
101.62
T
T
T
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
2.46
0.40
120.30
122.76
T
T
T
C6
N1
C2
DC
DC
DC
1
1
1
N
1
6.63
0.90
103.10
109.73
T
T
T
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
1
2.20
0.30
108.30
110.50
T
T
T
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
-2.96
0.40
121.90
118.94
T
T
T
N3
C4
C5
DC
DC
DC
2
2
2
N
1
13.12
1.20
119.70
132.82
T
T
T
C3'
O3'
P
DC
DC
DG
2
2
3
Y
1
4.80
0.30
108.30
113.10
T
T
T
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
-3.06
0.50
110.60
107.54
T
T
T
C2
N3
C4
DA
DA
DA
4
4
4
N
1
-3.67
0.50
117.70
114.03
T
T
T
C5
C6
N1
DA
DA
DA
4
4
4
N
1
10.06
1.40
114.30
124.36
T
T
T
N1
C1'
C2'
DC
DC
DC
5
5
5
N
1
5.09
0.30
108.30
113.39
T
T
T
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-3.71
0.40
120.30
116.59
T
T
T
C6
N1
C2
DC
DC
DC
5
5
5
N
1
4.91
0.70
119.20
124.11
T
T
T
N1
C2
N3
DC
DC
DC
5
5
5
N
1
-4.48
0.60
118.90
114.42
T
T
T
N1
C2
O2
DC
DC
DC
5
5
5
N
1
3.08
0.40
105.80
108.88
T
T
T
C8
N9
C4
DA
DA
DA
7
7
7
N
1
-5.74
0.80
109.40
103.66
T
T
T
O5'
C5'
C4'
DC
DC
DC
8
8
8
N
1
3.05
0.50
106.80
109.85
T
T
T
O4'
C1'
C2'
DC
DC
DC
8
8
8
N
1
-7.23
0.70
108.00
100.77
T
T
T
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
-2.95
0.40
105.40
102.45
T
T
T
N9
C4
C5
DG
DG
DG
9
9
9
N
1
-3.67
0.60
130.40
126.73
T
T
T
C6
C5
N7
DG
DG
DG
9
9
9
N
1
7.35
1.20
115.70
123.05
T
T
T
C5'
C4'
C3'
DC
DC
DC
10
10
10
N
1
-3.53
0.50
119.90
116.37
T
T
T
C2
N3
C4
DC
DC
DC
10
10
10
N
1
4.78
0.40
121.90
126.68
T
T
T
N3
C4
C5
DC
DC
DC
10
10
10
N
1
7.49
1.20
119.70
127.19
T
T
T
C3'
O3'
P
DC
DC
DA
10
10
11
Y
1
-5.05
0.70
108.00
102.95
T
T
T
O4'
C1'
N9
DA
DA
DA
11
11
11
N
1
-3.60
0.50
113.80
110.20
T
T
T
N7
C8
N9
DA
DA
DA
11
11
11
N
1
4.04
0.40
105.80
109.84
T
T
T
C8
N9
C4
DA
DA
DA
11
11
11
N
1
-2.52
0.40
105.80
103.28
T
T
T
N9
C4
C5
DA
DA
DA
11
11
11
N
1
12.34
1.40
114.30
126.64
T
T
T
N1
C1'
C2'
DC
DC
DC
13
13
13
N
1
-8.14
0.70
108.00
99.86
T
T
T
O4'
C1'
N9
DA
DA
DA
14
14
14
N
1
-3.04
0.50
113.80
110.76
T
T
T
N7
C8
N9
DA
DA
DA
14
14
14
N
1
3.56
0.40
105.80
109.36
T
T
T
C8
N9
C4
DA
DA
DA
14
14
14
N
1
7.52
1.20
115.70
123.22
T
T
T
C5'
C4'
C3'
DG
DG
DG
15
15
15
N
1
-9.93
1.60
120.90
110.97
T
T
T
P
O5'
C5'
DC
DC
DC
16
16
16
N
1
3.76
0.50
106.80
110.56
T
T
T
O4'
C1'
C2'
DC
DC
DC
16
16
16
N
1
2.85
0.30
108.30
111.15
T
T
T
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
2.55
0.40
120.30
122.85
T
T
T
C6
N1
C2
DC
DC
DC
16
16
16
N
1
-6.53
0.70
118.00
111.47
T
T
T
N3
C4
N4
DC
DC
DC
16
16
16
N
1
4.66
0.70
120.20
124.86
T
T
T
C5
C4
N4
DC
DC
DC
16
16
16
N
1
3.73
0.50
106.80
110.53
P
P
P
O4'
C1'
C2'
DG
DG
DG
1
1
1
N
1
-5.47
0.70
108.00
102.53
P
P
P
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
-4.52
0.50
111.90
107.38
P
P
P
C2
N3
C4
DG
DG
DG
1
1
1
N
1
3.35
0.50
128.60
131.95
P
P
P
N3
C4
C5
DG
DG
DG
1
1
1
N
1
2.80
0.40
106.40
109.20
P
P
P
C8
N9
C4
DG
DG
DG
1
1
1
N
1
2.99
0.30
108.30
111.29
P
P
P
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
4.27
0.30
108.30
112.57
P
P
P
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
3.77
0.30
108.30
112.07
P
P
P
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
3.97
0.40
106.40
110.37
P
P
P
C8
N9
C4
DG
DG
DG
4
4
4
N
1
-11.10
1.60
120.90
109.80
P
P
P
P
O5'
C5'
DA
DA
DA
5
5
5
N
1
9.99
1.40
114.30
124.29
P
P
P
N9
C1'
C2'
DA
DA
DA
5
5
5
N
1
2.99
0.40
105.80
108.79
P
P
P
C8
N9
C4
DA
DA
DA
5
5
5
N
1
-3.72
0.60
118.60
114.88
P
P
P
N1
C6
N6
DA
DA
DA
5
5
5
N
1
5.83
0.90
103.10
108.93
P
P
P
C4'
C3'
C2'
DT
DT
DT
6
6
6
N
1
4.99
0.50
106.80
111.79
P
P
P
O4'
C1'
C2'
DT
DT
DT
6
6
6
N
1
14.98
1.40
114.30
129.28
P
P
P
N1
C1'
C2'
DT
DT
DT
6
6
6
N
1
1.95
0.30
108.30
110.25
P
P
P
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
-3.63
0.60
127.20
123.57
P
P
P
C2
N3
C4
DT
DT
DT
6
6
6
N
1
-7.31
0.70
108.00
100.69
P
P
P
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
2.19
0.30
108.30
110.49
P
P
P
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
-4.07
0.60
118.90
114.83
P
P
P
N1
C2
O2
DC
DC
DC
8
8
8
N
1
9.26
1.20
110.70
119.96
P
P
P
O5'
P
OP2
DG
DG
DG
9
9
9
N
1
4.10
0.40
106.40
110.50
P
P
P
C8
N9
C4
DG
DG
DG
9
9
9
N
1
-10.91
0.90
105.70
94.79
P
P
P
O5'
P
OP1
DT
DT
DT
10
10
10
N
1
-13.13
1.60
120.90
107.77
P
P
P
P
O5'
C5'
DT
DT
DT
10
10
10
N
1
3.05
0.50
106.80
109.85
P
P
P
O4'
C1'
C2'
DT
DT
DT
10
10
10
N
1
3.35
0.30
108.30
111.65
P
P
P
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
4.94
0.60
119.90
124.84
P
P
P
N3
C4
O4
DT
DT
DT
10
10
10
N
1
-8.01
0.70
124.90
116.89
P
P
P
C5
C4
O4
DT
DT
DT
10
10
10
N
1
-8.70
0.60
119.00
110.30
P
P
P
C4
C5
C7
DT
DT
DT
10
10
10
N
1
7.18
0.60
122.90
130.08
P
P
P
C6
C5
C7
DT
DT
DT
10
10
10
N
1
-6.14
0.70
108.00
101.86
D
D
D
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
-6.48
0.50
113.10
106.62
D
D
D
N7
C8
N9
DG
DG
DG
1
1
1
N
1
6.04
0.40
106.40
112.44
D
D
D
C8
N9
C4
DG
DG
DG
1
1
1
N
1
-2.60
0.40
105.40
102.80
D
D
D
N9
C4
C5
DG
DG
DG
1
1
1
N
1
-6.34
0.90
105.70
99.36
D
D
D
O5'
P
OP1
DT
DT
DT
2
2
2
N
1
-16.24
1.60
120.90
104.66
D
D
D
P
O5'
C5'
DT
DT
DT
2
2
2
N
1
4.99
0.60
119.00
123.99
D
D
D
C4
C5
C7
DT
DT
DT
2
2
2
N
1
-4.53
0.60
122.90
118.37
D
D
D
C6
C5
C7
DT
DT
DT
2
2
2
N
1
3.08
0.50
106.80
109.88
D
D
D
O4'
C1'
C2'
DG
DG
DG
4
4
4
N
1
4.41
0.30
108.30
112.71
D
D
D
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
2.83
0.40
106.40
109.23
D
D
D
C8
N9
C4
DG
DG
DG
4
4
4
N
1
-3.74
0.60
126.00
122.26
D
D
D
N3
C4
N9
DG
DG
DG
4
4
4
N
1
-5.52
0.80
109.40
103.88
D
D
D
O5'
C5'
C4'
DG
DG
DG
5
5
5
N
1
-3.98
0.50
111.90
107.92
D
D
D
C2
N3
C4
DG
DG
DG
5
5
5
N
1
3.07
0.50
128.60
131.67
D
D
D
N3
C4
C5
DG
DG
DG
5
5
5
N
1
-4.26
0.50
113.10
108.84
D
D
D
N7
C8
N9
DG
DG
DG
5
5
5
N
1
4.24
0.40
106.40
110.64
D
D
D
C8
N9
C4
DG
DG
DG
5
5
5
N
1
9.77
1.50
119.30
129.07
A
A
A
C
N
CA
ALA
PRO
PRO
6
7
7
Y
1
23.93
2.70
111.00
134.93
A
A
A
N
CA
C
GLN
GLN
GLN
8
8
8
N
1
6.54
0.90
118.30
124.84
A
A
A
CB
CG
OD1
ASP
ASP
ASP
17
17
17
N
1
-7.84
0.90
118.30
110.46
A
A
A
CB
CG
OD2
ASP
ASP
ASP
17
17
17
N
1
5.32
0.60
121.00
126.32
A
A
A
CB
CG
CD2
TYR
TYR
TYR
39
39
39
N
1
-4.73
0.60
121.00
116.27
A
A
A
CB
CG
CD1
TYR
TYR
TYR
39
39
39
N
1
11.40
1.80
110.60
122.00
A
A
A
N
CA
CB
ARG
ARG
ARG
40
40
40
N
1
-9.24
1.40
112.40
103.16
A
A
A
CA
CB
CG2
THR
THR
THR
67
67
67
N
1
6.43
0.90
118.30
124.73
A
A
A
CB
CG
OD1
ASP
ASP
ASP
74
74
74
N
1
-7.59
0.90
118.30
110.71
A
A
A
CB
CG
OD2
ASP
ASP
ASP
74
74
74
N
1
4.15
0.50
120.30
124.45
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
83
83
83
N
1
-4.09
0.50
120.30
116.21
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
83
83
83
N
1
-5.90
0.90
118.30
112.40
A
A
A
CB
CG
OD1
ASP
ASP
ASP
91
91
91
N
1
-6.40
0.90
118.30
111.90
A
A
A
CB
CG
OD1
ASP
ASP
ASP
92
92
92
N
1
-13.09
2.10
109.00
95.91
A
A
A
CA
CB
OG1
THR
THR
THR
101
101
101
N
1
-4.25
0.50
120.30
116.05
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
102
102
102
N
1
11.75
1.50
110.50
122.25
A
A
A
N
CA
CB
SER
SER
SER
109
109
109
N
1
-8.80
1.40
110.10
101.30
A
A
A
N
CA
CB
ALA
ALA
ALA
110
110
110
N
1
4.13
0.50
120.30
124.43
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
126
126
126
N
1
-4.64
0.50
120.30
115.66
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
126
126
126
N
1
5.79
0.90
118.30
124.09
A
A
A
CB
CG
OD1
ASP
ASP
ASP
130
130
130
N
1
-6.66
0.90
118.30
111.64
A
A
A
CB
CG
OD2
ASP
ASP
ASP
130
130
130
N
1
-13.12
1.90
110.20
97.08
A
A
A
CB
CA
C
LEU
LEU
LEU
132
132
132
N
1
-12.50
2.00
110.40
97.90
A
A
A
CB
CA
C
LYS
LYS
LYS
148
148
148
N
1
-19.40
2.10
128.40
109.00
A
A
A
C
N
CD
ILE
PRO
PRO
150
151
151
Y
1
-6.85
0.90
118.30
111.45
A
A
A
CB
CG
OD2
ASP
ASP
ASP
160
160
160
N
1
11.12
1.80
110.60
121.72
A
A
A
N
CA
CB
ASN
ASN
ASN
164
164
164
N
1
7.33
0.90
118.30
125.63
A
A
A
CB
CG
OD1
ASP
ASP
ASP
170
170
170
N
1
-7.53
0.90
118.30
110.77
A
A
A
CB
CG
OD2
ASP
ASP
ASP
170
170
170
N
1
-5.69
0.90
118.30
112.61
A
A
A
CB
CG
OD2
ASP
ASP
ASP
190
190
190
N
1
5.84
0.90
118.30
124.14
A
A
A
CB
CG
OD1
ASP
ASP
ASP
246
246
246
N
1
-6.17
0.90
118.30
112.13
A
A
A
CB
CG
OD2
ASP
ASP
ASP
246
246
246
N
1
8.61
1.40
123.60
132.21
A
A
A
CD
NE
CZ
ARG
ARG
ARG
258
258
258
N
1
5.15
0.50
120.30
125.45
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
258
258
258
N
1
-3.64
0.50
120.30
116.66
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
258
258
258
N
1
-5.59
0.90
118.30
112.71
A
A
A
CB
CG
OD1
ASP
ASP
ASP
276
276
276
N
1
-14.05
2.10
128.40
114.35
A
A
A
C
N
CD
LEU
PRO
PRO
311
312
312
Y
1
-6.87
0.90
118.30
111.43
A
A
A
CB
CG
OD1
ASP
ASP
ASP
314
314
314
N
1
-5.59
0.90
118.30
112.71
A
A
A
CB
CG
OD2
ASP
ASP
ASP
318
318
318
N
1
5.71
0.90
118.30
124.01
A
A
A
CB
CG
OD1
ASP
ASP
ASP
321
321
321
N
1
-5.56
0.90
118.30
112.74
A
A
A
CB
CG
OD2
ASP
ASP
ASP
321
321
321
N
1
-6.27
0.90
118.30
112.03
A
A
A
CB
CG
OD1
ASP
ASP
ASP
332
332
332
N
1
T
T
C5
N7
DG
DG
3
3
0.038
0.006
1.388
1.426
N
1
T
T
C5'
C4'
DA
DA
4
4
0.043
0.007
1.512
1.555
N
1
T
T
N7
C8
DA
DA
4
4
0.065
0.007
1.311
1.376
N
1
T
T
C6
N6
DA
DA
4
4
0.061
0.008
1.335
1.396
N
1
T
T
O4'
C1'
DC
DC
5
5
-0.077
0.012
1.418
1.341
N
1
T
T
N1
C6
DC
DC
5
5
-0.054
0.006
1.367
1.313
N
1
T
T
N3
C4
DC
DC
5
5
-0.056
0.007
1.335
1.279
N
1
T
T
C4
C5
DC
DC
5
5
-0.054
0.008
1.425
1.371
N
1
T
T
O3'
C3'
DA
DA
7
7
-0.046
0.006
1.419
1.373
N
1
T
T
O4'
C4'
DA
DA
11
11
-0.076
0.010
1.446
1.370
N
1
T
T
O3'
C3'
DA
DA
14
14
-0.073
0.006
1.419
1.346
N
1
T
T
C5'
C4'
DG
DG
15
15
0.048
0.007
1.512
1.560
N
1
T
T
N3
C4
DG
DG
15
15
-0.083
0.007
1.350
1.267
N
1
T
T
N3
C4
DC
DC
16
16
-0.043
0.007
1.335
1.292
N
1
P
P
C5
C6
DG
DG
1
1
-0.084
0.010
1.419
1.335
N
1
P
P
C5
N7
DG
DG
1
1
-0.042
0.006
1.388
1.346
N
1
P
P
N9
C4
DG
DG
1
1
-0.065
0.008
1.375
1.310
N
1
P
P
C5
N7
DG
DG
4
4
0.039
0.006
1.388
1.427
N
1
P
P
C5
C6
DA
DA
5
5
0.055
0.009
1.406
1.461
N
1
P
P
C5
N7
DA
DA
5
5
0.044
0.006
1.388
1.432
N
1
P
P
O3'
C3'
DG
DG
7
7
-0.089
0.006
1.419
1.330
N
1
P
P
C2
N3
DG
DG
9
9
0.052
0.008
1.323
1.375
N
1
P
P
C5
N7
DG
DG
9
9
0.067
0.006
1.388
1.455
N
1
P
P
C4
C5
DT
DT
10
10
-0.089
0.009
1.445
1.356
N
1
D
D
P
OP3
DG
DG
1
1
-0.122
0.012
1.607
1.485
N
1
D
D
O3'
C3'
DG
DG
1
1
0.089
0.013
1.435
1.524
N
1
D
D
C4
C5
DG
DG
1
1
-0.051
0.007
1.379
1.328
N
1
D
D
C5
N7
DG
DG
1
1
0.052
0.006
1.388
1.440
N
1
D
D
C5'
C4'
DC
DC
3
3
0.049
0.007
1.512
1.561
N
1
D
D
O3'
C3'
DC
DC
3
3
-0.048
0.006
1.419
1.371
N
1
D
D
N7
C8
DG
DG
4
4
0.052
0.006
1.305
1.357
N
1
D
D
N7
C8
DG
DG
5
5
0.043
0.006
1.305
1.348
N
1
A
A
CB
CG
GLU
GLU
9
9
0.130
0.019
1.517
1.647
N
1
A
A
CD
OE1
GLU
GLU
21
21
0.067
0.011
1.252
1.319
N
1
A
A
CD
OE1
GLU
GLU
58
58
0.112
0.011
1.252
1.364
N
1
A
A
CD
OE2
GLU
GLU
71
71
0.077
0.011
1.252
1.329
N
1
A
A
CD
OE1
GLU
GLU
86
86
0.066
0.011
1.252
1.318
N
1
A
A
CD
OE2
GLU
GLU
129
129
0.080
0.011
1.252
1.332
N
1
A
A
CD
OE2
GLU
GLU
147
147
0.079
0.011
1.252
1.331
N
1
A
A
CD
OE2
GLU
GLU
153
153
0.068
0.011
1.252
1.320
N
1
A
A
CD
OE2
GLU
GLU
154
154
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE2
GLU
GLU
165
165
0.067
0.011
1.252
1.319
N
1
A
A
CD
OE2
GLU
GLU
172
172
0.071
0.011
1.252
1.323
N
1
A
A
CD
OE1
GLU
GLU
203
203
0.071
0.011
1.252
1.323
N
1
A
A
CD
OE2
GLU
GLU
232
232
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE2
GLU
GLU
335
335
0.066
0.011
1.252
1.318
N
1
A
PRO
7
-85.10
-82.74
1
A
GLN
8
47.31
-5.63
1
A
GLU
9
-73.94
-76.42
1
A
LEU
11
-77.96
-87.17
1
A
LYS
27
-55.96
-81.13
1
A
GLN
31
80.12
35.68
1
A
ALA
32
-104.18
79.67
1
A
ALA
38
-61.09
-71.15
1
A
ALA
42
-50.66
-78.73
1
A
TYR
49
-53.17
105.16
1
A
PRO
50
-58.48
47.07
1
A
LYS
81
-160.08
-161.94
1
A
GLU
117
-68.02
21.76
1
A
LYS
120
-163.64
12.09
1
A
LYS
127
-86.55
32.53
1
A
ASN
128
-160.96
13.49
1
A
GLU
129
-39.72
-18.84
1
A
LYS
131
-91.39
33.31
1
A
LYS
141
-58.97
-93.47
1
A
TYR
142
-60.80
31.57
1
A
PHE
143
-45.50
-74.40
1
A
ARG
152
-30.24
-28.67
1
A
THR
176
-163.55
119.52
1
A
ARG
183
-80.64
44.98
1
A
ALA
185
-45.83
156.75
1
A
SER
187
179.45
102.83
1
A
SER
202
-38.19
-84.03
1
A
GLU
203
-64.60
0.26
1
A
VAL
221
-81.00
38.94
1
A
HIS
222
41.60
22.95
1
A
THR
225
-83.61
-81.52
1
A
SER
229
179.16
157.48
1
A
PRO
242
-52.66
103.40
1
A
TYR
250
-63.03
-170.32
1
A
TYR
265
-61.33
-84.98
1
A
TYR
266
-27.30
-47.85
1
A
THR
273
-47.85
-18.22
1
A
ASN
294
-161.05
-149.60
1
A
GLU
309
67.38
99.08
1
A
SER
315
175.02
148.58
1
A
TYR
327
-56.35
94.09
1
A
ARG
333
-86.26
35.73
THE ENTIRE THUMB SUBDOMAIN (RESIDUES 261 - 335) IS MODELED
WITH ONLY 0.5 OCCUPANCY DUE TO WEAK ELECTRON DENSITY.
THERE IS NO OTHER PATTERN OF DENSITY WARRANTING A SECOND
POSITION FOR THE THUMB SUBDOMAIN.
0.243
2.600
20.000
14702
14702
94.000
1
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 9ICJ
TNT PROTGEO
MOEWS
88.70
0.714
2.600
20.000
27
3333
2
651
2653
0.020
3474
0.550
3.000
4754
1.000
22.20
2027
1.000
0
0.013
74
1.000
0.007
432
10.00
7.000
3474
0.025
0.022
270
10.00
2.600
20.000
1BPZ
14702
0.000
0.000
0.073
1
2.900
94.000
2.600
2.690
0.344
95.60
data reduction
DENZO
data scaling
SCALEPACK
phasing
MERLOT
refinement
TNT
5D
HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
GLY
13
D
GLY
13
HELX_P
A
SER
30
D
SER
30
1
A
18
A
ILE
33
D
ILE
33
HELX_P
A
LYS
48
D
LYS
48
1
B
16
A
GLY
56
D
GLY
56
HELX_P
A
LYS
61
D
LYS
61
1
C
6
A
THR
67
D
THR
67
HELX_P
SEE REMARK 650
A
THR
79
D
THR
79
1
D
13
A
ARG
83
D
ARG
83
HELX_P
A
GLN
90
D
GLN
90
1
E
8
A
ASP
92
D
ASP
92
HELX_P
A
ARG
102
D
ARG
102
1
F
11
A
PRO
108
D
PRO
108
HELX_P
SEE REMARK 650
A
ASP
116
D
ASP
116
1
G
9
A
LEU
122
D
LEU
122
HELX_P
A
LYS
127
D
LYS
127
1
H
6
A
HIS
134
D
HIS
134
HELX_P
A
GLU
147
D
GLU
147
1
I
14
A
ARG
152
D
ARG
152
HELX_P
A
VAL
169
D
VAL
169
1
J
18
A
SER
180
D
SER
180
HELX_P
A
ARG
183
D
ARG
183
1
K
4
A
PRO
208
D
PRO
208
HELX_P
A
LYS
220
D
LYS
220
1
L
13
A
LYS
262
D
LYS
262
HELX_P
A
THR
273
D
THR
273
1
M
12
A
ASP
276
D
ASP
276
HELX_P
A
GLU
288
D
GLU
288
1
N
13
A
GLU
316
D
GLU
316
HELX_P
A
ILE
323
D
ILE
323
1
O
8
A
PRO
330
D
PRO
330
HELX_P
A
ASP
332
D
ASP
332
5
P
3
metalc
2.434
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
E
NA
NA
1_555
metalc
2.936
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
F
NA
NA
1_555
metalc
2.276
A
LYS
60
D
O
LYS
60
1_555
A
NA
342
F
NA
NA
1_555
metalc
2.231
A
LEU
62
D
O
LEU
62
1_555
A
NA
342
F
NA
NA
1_555
metalc
2.461
A
VAL
65
D
O
VAL
65
1_555
A
NA
342
F
NA
NA
1_555
metalc
2.215
A
THR
101
D
O
THR
101
1_555
A
NA
341
E
NA
NA
1_555
metalc
2.724
A
VAL
103
D
O
VAL
103
1_555
A
NA
341
E
NA
NA
1_555
metalc
2.094
A
ILE
106
D
O
ILE
106
1_555
A
NA
341
E
NA
NA
1_555
metalc
2.193
A
NA
341
E
NA
NA
1_555
A
HOH
500
J
O
HOH
1_555
metalc
2.103
A
NA
342
F
NA
NA
1_555
A
HOH
502
J
O
HOH
1_555
hydrog
WATSON-CRICK
T
DC
1
A
N3
DC
1
1_555
D
DG
5
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
1
A
N4
DC
1
1_555
D
DG
5
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
1
A
O2
DC
1
1_555
D
DG
5
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
2
A
N3
DC
2
1_555
D
DG
4
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
2
A
N4
DC
2
1_555
D
DG
4
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
2
A
O2
DC
2
1_555
D
DG
4
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DG
3
A
N1
DG
3
1_555
D
DC
3
C
N3
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
3
A
N2
DG
3
1_555
D
DC
3
C
O2
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
3
A
O6
DG
3
1_555
D
DC
3
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
T
DA
4
A
N1
DA
4
1_555
D
DT
2
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
T
DA
4
A
N6
DA
4
1_555
D
DT
2
C
O4
DT
2
1_555
hydrog
WATSON-CRICK
T
DC
5
A
N3
DC
5
1_555
D
DG
1
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
5
A
N4
DC
5
1_555
D
DG
1
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
5
A
O2
DC
5
1_555
D
DG
1
C
N2
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
6
A
N3
DC
6
1_555
P
DG
11
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
T
DC
6
A
N4
DC
6
1_555
P
DG
11
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
T
DC
6
A
O2
DC
6
1_555
P
DG
11
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
T
DA
7
A
N1
DA
7
1_555
P
DT
10
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
T
DA
7
A
N6
DA
7
1_555
P
DT
10
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
T
DC
8
A
N3
DC
8
1_555
P
DG
9
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
8
A
N4
DC
8
1_555
P
DG
9
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
8
A
O2
DC
8
1_555
P
DG
9
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
T
DG
9
A
N1
DG
9
1_555
P
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
T
DG
9
A
N2
DG
9
1_555
P
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
T
DG
9
A
O6
DG
9
1_555
P
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
T
DC
10
A
N3
DC
10
1_555
P
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
T
DC
10
A
N4
DC
10
1_555
P
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
T
DC
10
A
O2
DC
10
1_555
P
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
T
DA
11
A
N1
DA
11
1_555
P
DT
6
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
T
DA
11
A
N6
DA
11
1_555
P
DT
6
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
T
DT
12
A
N3
DT
12
1_555
P
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
T
DT
12
A
O4
DT
12
1_555
P
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
T
DC
13
A
N3
DC
13
1_555
P
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
13
A
N4
DC
13
1_555
P
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
13
A
O2
DC
13
1_555
P
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DA
14
A
N1
DA
14
1_555
P
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
T
DA
14
A
N6
DA
14
1_555
P
DT
3
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
T
DG
15
A
N1
DG
15
1_555
P
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
T
DG
15
A
N2
DG
15
1_555
P
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
T
DG
15
A
O6
DG
15
1_555
P
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
T
DC
16
A
N3
DC
16
1_555
P
DG
1
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
16
A
N4
DC
16
1_555
P
DG
1
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
16
A
O2
DC
16
1_555
P
DG
1
B
N2
DG
1
1_555
TRANSFERASE/DNA
NUCLEOTIDYLTRANSFERASE, DNA REPAIR, BASE EXCISION REPAIR PATHWAY, TRANSFERASE-DNA COMPLEX
A
GLY
274
D
GLY
274
1
A
SER
275
D
SER
275
0.48
DPOB_HUMAN
UNP
4
1
P06746
1BPZ
PDB
1
1BPZ
1BPZ
PDB
2
1BPZ
1BPZ
PDB
3
1BPZ
1
334
1BPZ
2
335
P06746
A
1
2
335
1
16
1BPZ
1
16
1BPZ
T
2
1
16
1
11
1BPZ
1
11
1BPZ
P
3
1
11
1
5
1BPZ
1
5
1BPZ
D
4
1
5
2
5
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
150
D
ILE
150
A
PRO
151
D
PRO
151
A
SER
187
D
SER
187
A
SER
188
D
SER
188
A
ILE
174
D
ILE
174
A
CYS
178
D
CYS
178
A
MET
191
D
MET
191
A
THR
196
D
THR
196
A
ARG
253
D
ARG
253
A
ARG
258
D
ARG
258
A
LYS
234
D
LYS
234
A
CYS
239
D
CYS
239
A
SER
229
D
SER
229
A
GLY
231
D
GLY
231
A
PHE
291
D
PHE
291
A
ASN
294
D
ASN
294
A
THR
297
D
THR
297
A
PRO
300
D
PRO
300
Unknown
3
BINDING SITE FOR RESIDUE NA A 341
A
NA
341
Software
5
BINDING SITE FOR RESIDUE NA A 342
A
NA
342
Software
5
A
ASP
190
D
ASP
190
3
1_555
A
ASP
192
D
ASP
192
3
1_555
A
ASP
256
D
ASP
256
3
1_555
A
THR
101
D
THR
101
5
1_555
A
VAL
103
D
VAL
103
5
1_555
A
ILE
106
D
ILE
106
5
1_555
A
HOH
500
J
HOH
5
1_555
P
DG
9
B
DG
9
5
1_555
A
LYS
60
D
LYS
60
5
1_555
A
LEU
62
D
LEU
62
5
1_555
A
VAL
65
D
VAL
65
5
1_555
A
HOH
502
J
HOH
5
1_555
D
DC
3
C
DC
3
5
1_555
4
P 1 21 1