0.017627
0.000000
0.000000
0.000000
0.016249
0.000000
0.000000
0.000000
0.033241
0.00000
0.00000
0.00000
Inoue, T.
Nishio, N.
Hamanaka, S.
Shimomura, T.
Harada, S.
Suzuki, S.
Kohzuma, T.
Shidara, S.
Iwasaki, H.
Kai, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
56.731
61.544
30.083
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
274
17845
17852
10.1074/jbc.274.25.17845
10364229
Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
1999
University (Thesis)
Thesis
9999
Crystal Structure Determinations of Oxidized and Reduced Pseudoazurin from Achromobacter Cycloclastes: A Redox-Induced Conformational Change Contains a Peptide Bond Flip
JA
J.Biochem.(Tokyo)
JOBIAO
0418
0021-924X
114
761
Crystallization and Preliminary X-Ray Studies on Pseudoazurin from Achromobacter Cycloclastes Iam1013
1993
10.2210/pdb1bqk/pdb
pdb_00001bqk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
MIRROR
IMAGE PLATE
1993-06-25
FUJI
NI FILTER
M
x-ray
1
1.0
1.0
BL-6A
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
OXIDIZED FORM OF PSEUDOAZURIN
13032.940
PSEUDOAZURIN
1
nat
polymer
63.546
COPPER (II) ION
1
syn
non-polymer
18.015
water
121
nat
water
no
no
ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP
HYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGN
ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP
HYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Achromobacter
sample
223
Achromobacter cycloclastes
IAM1013
1
1.9
40.
DATA WERE COLLECTED USING THE WEISSENBERG METHOD
6.0
pH 6.0
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1999-08-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-08-17
REL
REL
CU
COPPER (II) ION
HOH
water
1PZA
PDB ENTRY 1PZA
PDB
experimental model
CU
125
2
CU
CU
125
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
275
3
HOH
HOH
275
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
280
3
HOH
HOH
280
A
HOH
281
3
HOH
HOH
281
A
HOH
282
3
HOH
HOH
282
A
HOH
283
3
HOH
HOH
283
A
HOH
284
3
HOH
HOH
284
A
HOH
285
3
HOH
HOH
285
A
HOH
286
3
HOH
HOH
286
A
HOH
287
3
HOH
HOH
287
A
HOH
288
3
HOH
HOH
288
A
HOH
289
3
HOH
HOH
289
A
HOH
290
3
HOH
HOH
290
A
HOH
291
3
HOH
HOH
291
A
HOH
292
3
HOH
HOH
292
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
296
3
HOH
HOH
296
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
299
3
HOH
HOH
299
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
PHE
3
n
3
PHE
3
A
GLU
4
n
4
GLU
4
A
VAL
5
n
5
VAL
5
A
HIS
6
n
6
HIS
6
A
MET
7
n
7
MET
7
A
LEU
8
n
8
LEU
8
A
ASN
9
n
9
ASN
9
A
LYS
10
n
10
LYS
10
A
GLY
11
n
11
GLY
11
A
LYS
12
n
12
LYS
12
A
ASP
13
n
13
ASP
13
A
GLY
14
n
14
GLY
14
A
ALA
15
n
15
ALA
15
A
MET
16
n
16
MET
16
A
VAL
17
n
17
VAL
17
A
PHE
18
n
18
PHE
18
A
GLU
19
n
19
GLU
19
A
PRO
20
n
20
PRO
20
A
ALA
21
n
21
ALA
21
A
SER
22
n
22
SER
22
A
LEU
23
n
23
LEU
23
A
LYS
24
n
24
LYS
24
A
VAL
25
n
25
VAL
25
A
ALA
26
n
26
ALA
26
A
PRO
27
n
27
PRO
27
A
GLY
28
n
28
GLY
28
A
ASP
29
n
29
ASP
29
A
THR
30
n
30
THR
30
A
VAL
31
n
31
VAL
31
A
THR
32
n
32
THR
32
A
PHE
33
n
33
PHE
33
A
ILE
34
n
34
ILE
34
A
PRO
35
n
35
PRO
35
A
THR
36
n
36
THR
36
A
ASP
37
n
37
ASP
37
A
LYS
38
n
38
LYS
38
A
GLY
39
n
39
GLY
39
A
HIS
40
n
40
HIS
40
A
ASN
41
n
41
ASN
41
A
VAL
42
n
42
VAL
42
A
GLU
43
n
43
GLU
43
A
THR
44
n
44
THR
44
A
ILE
45
n
45
ILE
45
A
LYS
46
n
46
LYS
46
A
GLY
47
n
47
GLY
47
A
MET
48
n
48
MET
48
A
ILE
49
n
49
ILE
49
A
PRO
50
n
50
PRO
50
A
ASP
51
n
51
ASP
51
A
GLY
52
n
52
GLY
52
A
ALA
53
n
53
ALA
53
A
GLU
54
n
54
GLU
54
A
ALA
55
n
55
ALA
55
A
PHE
56
n
56
PHE
56
A
LYS
57
n
57
LYS
57
A
SER
58
n
58
SER
58
A
LYS
59
n
59
LYS
59
A
ILE
60
n
60
ILE
60
A
ASN
61
n
61
ASN
61
A
GLU
62
n
62
GLU
62
A
ASN
63
n
63
ASN
63
A
TYR
64
n
64
TYR
64
A
LYS
65
n
65
LYS
65
A
VAL
66
n
66
VAL
66
A
THR
67
n
67
THR
67
A
PHE
68
n
68
PHE
68
A
THR
69
n
69
THR
69
A
ALA
70
n
70
ALA
70
A
PRO
71
n
71
PRO
71
A
GLY
72
n
72
GLY
72
A
VAL
73
n
73
VAL
73
A
TYR
74
n
74
TYR
74
A
GLY
75
n
75
GLY
75
A
VAL
76
n
76
VAL
76
A
LYS
77
n
77
LYS
77
A
CYS
78
n
78
CYS
78
A
THR
79
n
79
THR
79
A
PRO
80
n
80
PRO
80
A
HIS
81
n
81
HIS
81
A
TYR
82
n
82
TYR
82
A
GLY
83
n
83
GLY
83
A
MET
84
n
84
MET
84
A
GLY
85
n
85
GLY
85
A
MET
86
n
86
MET
86
A
VAL
87
n
87
VAL
87
A
GLY
88
n
88
GLY
88
A
VAL
89
n
89
VAL
89
A
VAL
90
n
90
VAL
90
A
GLN
91
n
91
GLN
91
A
VAL
92
n
92
VAL
92
A
GLY
93
n
93
GLY
93
A
ASP
94
n
94
ASP
94
A
ALA
95
n
95
ALA
95
A
PRO
96
n
96
PRO
96
A
ALA
97
n
97
ALA
97
A
ASN
98
n
98
ASN
98
A
LEU
99
n
99
LEU
99
A
GLU
100
n
100
GLU
100
A
ALA
101
n
101
ALA
101
A
VAL
102
n
102
VAL
102
A
LYS
103
n
103
LYS
103
A
GLY
104
n
104
GLY
104
A
ALA
105
n
105
ALA
105
A
LYS
106
n
106
LYS
106
A
ASN
107
n
107
ASN
107
A
PRO
108
n
108
PRO
108
A
LYS
109
n
109
LYS
109
A
LYS
110
n
110
LYS
110
A
ALA
111
n
111
ALA
111
A
GLN
112
n
112
GLN
112
A
GLU
113
n
113
GLU
113
A
ARG
114
n
114
ARG
114
A
LEU
115
n
115
LEU
115
A
ASP
116
n
116
ASP
116
A
ALA
117
n
117
ALA
117
A
ALA
118
n
118
ALA
118
A
LEU
119
n
119
LEU
119
A
ALA
120
n
120
ALA
120
A
ALA
121
n
121
ALA
121
A
LEU
122
n
122
LEU
122
A
GLY
123
n
123
GLY
123
A
ASN
124
n
124
ASN
124
A
author_defined_assembly
1
monomeric
A
HIS
40
A
ND1
HIS
40
1_555
A
CU
125
B
CU
CU
1_555
A
CYS
78
A
SG
CYS
78
1_555
135.3
A
HIS
40
A
ND1
HIS
40
1_555
A
CU
125
B
CU
CU
1_555
A
HIS
81
A
ND1
HIS
81
1_555
100.3
A
CYS
78
A
SG
CYS
78
1_555
A
CU
125
B
CU
CU
1_555
A
HIS
81
A
ND1
HIS
81
1_555
114.5
A
HIS
40
A
ND1
HIS
40
1_555
A
CU
125
B
CU
CU
1_555
A
MET
86
A
SD
MET
86
1_555
86.8
A
CYS
78
A
SG
CYS
78
1_555
A
CU
125
B
CU
CU
1_555
A
MET
86
A
SD
MET
86
1_555
107.4
A
HIS
81
A
ND1
HIS
81
1_555
A
CU
125
B
CU
CU
1_555
A
MET
86
A
SD
MET
86
1_555
107.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
17
A
O
VAL
17
A
N
LEU
8
A
N
LEU
8
A
O
PHE
3
A
O
PHE
3
A
N
THR
30
A
N
THR
30
A
O
VAL
31
A
O
VAL
31
A
N
VAL
66
A
N
VAL
66
A
O
LEU
23
A
O
LEU
23
A
N
VAL
89
A
N
VAL
89
A
O
GLY
88
A
O
GLY
88
A
N
VAL
76
A
N
VAL
76
1
A
MET
16
57.49
77.59
1
A
ASN
61
77.45
-2.79
1
A
THR
69
-102.40
-72.61
11.3
ESTIMATED COORDINATE ERROR. ESD FROM LUZZATI PLOT (A) : 0.137
0.1900000
0.1780000
0.1760000
1.35
8.0
1084
21303
5
88.8
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1PZA
0.13
1.35
8.0
121
1035
1
0
913
0.008
0.020
0.022
0.040
0.026
0.050
1.137
2.000
1.700
3.000
1.912
2.000
2.937
3.000
0.0225
0.03
0.109
0.150
0.168
0.300
0.237
0.300
0.132
0.300
4.0
7.0
12.9
15.0
22.8
20.0
11.2
15.0
9.02
1.35
8.0
1BQK
21303
0
0.0850000
1
8.0
10.5
88.8
0.1820000
1.35
1.4
3.4
56
phasing
AMoRE
refinement
REFMAC
data reduction
DENZO
data scaling
SCALEPACK
OXIDIZED PSEUDOAZURIN
1
N
N
2
N
N
3
N
N
A
THR
79
A
THR
79
HELX_P
A
MET
84
A
MET
84
5
1
6
A
LEU
99
A
LEU
99
HELX_P
A
GLY
104
A
GLY
104
1
2
6
A
LYS
109
A
LYS
109
HELX_P
A
LEU
122
A
LEU
122
1
3
14
metalc
1.950
A
HIS
40
A
ND1
HIS
40
1_555
A
CU
125
B
CU
CU
1_555
metalc
2.132
A
CYS
78
A
SG
CYS
78
1_555
A
CU
125
B
CU
CU
1_555
metalc
1.921
A
HIS
81
A
ND1
HIS
81
1_555
A
CU
125
B
CU
CU
1_555
metalc
2.710
A
MET
86
A
SD
MET
86
1_555
A
CU
125
B
CU
CU
1_555
ELECTRON TRANSPORT
CUPROPROTEIN, ELECTRON TRANSPORT
A
GLU
19
A
GLU
19
1
A
PRO
20
A
PRO
20
0.06
AZUP_ACHCY
UNP
1
1
P19567
MEKTMLNAIKSGFGIAIAAMLVAAPAAAADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDG
AEAFKSKINENYKVTFTAPGVYGVKCTPHYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGN
29
152
1BQK
1
124
P19567
A
1
1
124
4
3
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
A
VAL
17
A
VAL
17
A
GLU
19
A
GLU
19
A
ASP
2
A
ASP
2
A
LEU
8
A
LEU
8
A
THR
30
A
THR
30
A
ILE
34
A
ILE
34
A
TYR
64
A
TYR
64
A
THR
67
A
THR
67
A
SER
22
A
SER
22
A
VAL
25
A
VAL
25
A
VAL
87
A
VAL
87
A
VAL
92
A
VAL
92
A
GLY
72
A
GLY
72
A
LYS
77
A
LYS
77
OXIDIZED COPPER COORDINATION
Unknown
4
BINDING SITE FOR RESIDUE CU A 125
A
CU
125
Software
4
A
HIS
40
A
HIS
40
4
1_555
A
CYS
78
A
CYS
78
4
1_555
A
HIS
81
A
HIS
81
4
1_555
A
MET
86
A
MET
86
4
1_555
A
HIS
40
A
HIS
40
4
1_555
A
CYS
78
A
CYS
78
4
1_555
A
HIS
81
A
HIS
81
4
1_555
A
MET
86
A
MET
86
4
1_555
19
P 21 21 21