0.017627 0.000000 0.000000 0.000000 0.016249 0.000000 0.000000 0.000000 0.033241 0.00000 0.00000 0.00000 Inoue, T. Nishio, N. Hamanaka, S. Shimomura, T. Harada, S. Suzuki, S. Kohzuma, T. Shidara, S. Iwasaki, H. Kai, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 56.731 61.544 30.083 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cu 2 63.546 COPPER (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 274 17845 17852 10.1074/jbc.274.25.17845 10364229 Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine. 1999 University (Thesis) Thesis 9999 Crystal Structure Determinations of Oxidized and Reduced Pseudoazurin from Achromobacter Cycloclastes: A Redox-Induced Conformational Change Contains a Peptide Bond Flip JA J.Biochem.(Tokyo) JOBIAO 0418 0021-924X 114 761 Crystallization and Preliminary X-Ray Studies on Pseudoazurin from Achromobacter Cycloclastes Iam1013 1993 10.2210/pdb1bqk/pdb pdb_00001bqk 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 MIRROR IMAGE PLATE 1993-06-25 FUJI NI FILTER M x-ray 1 1.0 1.0 BL-6A Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A OXIDIZED FORM OF PSEUDOAZURIN 13032.940 PSEUDOAZURIN 1 nat polymer 63.546 COPPER (II) ION 1 syn non-polymer 18.015 water 121 nat water no no ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP HYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGN ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP HYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Achromobacter sample 223 Achromobacter cycloclastes IAM1013 1 1.9 40. DATA WERE COLLECTED USING THE WEISSENBERG METHOD 6.0 pH 6.0 database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 1999-08-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-08-17 REL REL CU COPPER (II) ION HOH water 1PZA PDB ENTRY 1PZA PDB experimental model CU 125 2 CU CU 125 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 285 3 HOH HOH 285 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A ALA 1 n 1 ALA 1 A ASP 2 n 2 ASP 2 A PHE 3 n 3 PHE 3 A GLU 4 n 4 GLU 4 A VAL 5 n 5 VAL 5 A HIS 6 n 6 HIS 6 A MET 7 n 7 MET 7 A LEU 8 n 8 LEU 8 A ASN 9 n 9 ASN 9 A LYS 10 n 10 LYS 10 A GLY 11 n 11 GLY 11 A LYS 12 n 12 LYS 12 A ASP 13 n 13 ASP 13 A GLY 14 n 14 GLY 14 A ALA 15 n 15 ALA 15 A MET 16 n 16 MET 16 A VAL 17 n 17 VAL 17 A PHE 18 n 18 PHE 18 A GLU 19 n 19 GLU 19 A PRO 20 n 20 PRO 20 A ALA 21 n 21 ALA 21 A SER 22 n 22 SER 22 A LEU 23 n 23 LEU 23 A LYS 24 n 24 LYS 24 A VAL 25 n 25 VAL 25 A ALA 26 n 26 ALA 26 A PRO 27 n 27 PRO 27 A GLY 28 n 28 GLY 28 A ASP 29 n 29 ASP 29 A THR 30 n 30 THR 30 A VAL 31 n 31 VAL 31 A THR 32 n 32 THR 32 A PHE 33 n 33 PHE 33 A ILE 34 n 34 ILE 34 A PRO 35 n 35 PRO 35 A THR 36 n 36 THR 36 A ASP 37 n 37 ASP 37 A LYS 38 n 38 LYS 38 A GLY 39 n 39 GLY 39 A HIS 40 n 40 HIS 40 A ASN 41 n 41 ASN 41 A VAL 42 n 42 VAL 42 A GLU 43 n 43 GLU 43 A THR 44 n 44 THR 44 A ILE 45 n 45 ILE 45 A LYS 46 n 46 LYS 46 A GLY 47 n 47 GLY 47 A MET 48 n 48 MET 48 A ILE 49 n 49 ILE 49 A PRO 50 n 50 PRO 50 A ASP 51 n 51 ASP 51 A GLY 52 n 52 GLY 52 A ALA 53 n 53 ALA 53 A GLU 54 n 54 GLU 54 A ALA 55 n 55 ALA 55 A PHE 56 n 56 PHE 56 A LYS 57 n 57 LYS 57 A SER 58 n 58 SER 58 A LYS 59 n 59 LYS 59 A ILE 60 n 60 ILE 60 A ASN 61 n 61 ASN 61 A GLU 62 n 62 GLU 62 A ASN 63 n 63 ASN 63 A TYR 64 n 64 TYR 64 A LYS 65 n 65 LYS 65 A VAL 66 n 66 VAL 66 A THR 67 n 67 THR 67 A PHE 68 n 68 PHE 68 A THR 69 n 69 THR 69 A ALA 70 n 70 ALA 70 A PRO 71 n 71 PRO 71 A GLY 72 n 72 GLY 72 A VAL 73 n 73 VAL 73 A TYR 74 n 74 TYR 74 A GLY 75 n 75 GLY 75 A VAL 76 n 76 VAL 76 A LYS 77 n 77 LYS 77 A CYS 78 n 78 CYS 78 A THR 79 n 79 THR 79 A PRO 80 n 80 PRO 80 A HIS 81 n 81 HIS 81 A TYR 82 n 82 TYR 82 A GLY 83 n 83 GLY 83 A MET 84 n 84 MET 84 A GLY 85 n 85 GLY 85 A MET 86 n 86 MET 86 A VAL 87 n 87 VAL 87 A GLY 88 n 88 GLY 88 A VAL 89 n 89 VAL 89 A VAL 90 n 90 VAL 90 A GLN 91 n 91 GLN 91 A VAL 92 n 92 VAL 92 A GLY 93 n 93 GLY 93 A ASP 94 n 94 ASP 94 A ALA 95 n 95 ALA 95 A PRO 96 n 96 PRO 96 A ALA 97 n 97 ALA 97 A ASN 98 n 98 ASN 98 A LEU 99 n 99 LEU 99 A GLU 100 n 100 GLU 100 A ALA 101 n 101 ALA 101 A VAL 102 n 102 VAL 102 A LYS 103 n 103 LYS 103 A GLY 104 n 104 GLY 104 A ALA 105 n 105 ALA 105 A LYS 106 n 106 LYS 106 A ASN 107 n 107 ASN 107 A PRO 108 n 108 PRO 108 A LYS 109 n 109 LYS 109 A LYS 110 n 110 LYS 110 A ALA 111 n 111 ALA 111 A GLN 112 n 112 GLN 112 A GLU 113 n 113 GLU 113 A ARG 114 n 114 ARG 114 A LEU 115 n 115 LEU 115 A ASP 116 n 116 ASP 116 A ALA 117 n 117 ALA 117 A ALA 118 n 118 ALA 118 A LEU 119 n 119 LEU 119 A ALA 120 n 120 ALA 120 A ALA 121 n 121 ALA 121 A LEU 122 n 122 LEU 122 A GLY 123 n 123 GLY 123 A ASN 124 n 124 ASN 124 A author_defined_assembly 1 monomeric A HIS 40 A ND1 HIS 40 1_555 A CU 125 B CU CU 1_555 A CYS 78 A SG CYS 78 1_555 135.3 A HIS 40 A ND1 HIS 40 1_555 A CU 125 B CU CU 1_555 A HIS 81 A ND1 HIS 81 1_555 100.3 A CYS 78 A SG CYS 78 1_555 A CU 125 B CU CU 1_555 A HIS 81 A ND1 HIS 81 1_555 114.5 A HIS 40 A ND1 HIS 40 1_555 A CU 125 B CU CU 1_555 A MET 86 A SD MET 86 1_555 86.8 A CYS 78 A SG CYS 78 1_555 A CU 125 B CU CU 1_555 A MET 86 A SD MET 86 1_555 107.4 A HIS 81 A ND1 HIS 81 1_555 A CU 125 B CU CU 1_555 A MET 86 A SD MET 86 1_555 107.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 17 A O VAL 17 A N LEU 8 A N LEU 8 A O PHE 3 A O PHE 3 A N THR 30 A N THR 30 A O VAL 31 A O VAL 31 A N VAL 66 A N VAL 66 A O LEU 23 A O LEU 23 A N VAL 89 A N VAL 89 A O GLY 88 A O GLY 88 A N VAL 76 A N VAL 76 1 A MET 16 57.49 77.59 1 A ASN 61 77.45 -2.79 1 A THR 69 -102.40 -72.61 11.3 ESTIMATED COORDINATE ERROR. ESD FROM LUZZATI PLOT (A) : 0.137 0.1900000 0.1780000 0.1760000 1.35 8.0 1084 21303 5 88.8 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1PZA 0.13 1.35 8.0 121 1035 1 0 913 0.008 0.020 0.022 0.040 0.026 0.050 1.137 2.000 1.700 3.000 1.912 2.000 2.937 3.000 0.0225 0.03 0.109 0.150 0.168 0.300 0.237 0.300 0.132 0.300 4.0 7.0 12.9 15.0 22.8 20.0 11.2 15.0 9.02 1.35 8.0 1BQK 21303 0 0.0850000 1 8.0 10.5 88.8 0.1820000 1.35 1.4 3.4 56 phasing AMoRE refinement REFMAC data reduction DENZO data scaling SCALEPACK OXIDIZED PSEUDOAZURIN 1 N N 2 N N 3 N N A THR 79 A THR 79 HELX_P A MET 84 A MET 84 5 1 6 A LEU 99 A LEU 99 HELX_P A GLY 104 A GLY 104 1 2 6 A LYS 109 A LYS 109 HELX_P A LEU 122 A LEU 122 1 3 14 metalc 1.950 A HIS 40 A ND1 HIS 40 1_555 A CU 125 B CU CU 1_555 metalc 2.132 A CYS 78 A SG CYS 78 1_555 A CU 125 B CU CU 1_555 metalc 1.921 A HIS 81 A ND1 HIS 81 1_555 A CU 125 B CU CU 1_555 metalc 2.710 A MET 86 A SD MET 86 1_555 A CU 125 B CU CU 1_555 ELECTRON TRANSPORT CUPROPROTEIN, ELECTRON TRANSPORT A GLU 19 A GLU 19 1 A PRO 20 A PRO 20 0.06 AZUP_ACHCY UNP 1 1 P19567 MEKTMLNAIKSGFGIAIAAMLVAAPAAAADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDG AEAFKSKINENYKVTFTAPGVYGVKCTPHYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGN 29 152 1BQK 1 124 P19567 A 1 1 124 4 3 anti-parallel parallel anti-parallel parallel anti-parallel A VAL 17 A VAL 17 A GLU 19 A GLU 19 A ASP 2 A ASP 2 A LEU 8 A LEU 8 A THR 30 A THR 30 A ILE 34 A ILE 34 A TYR 64 A TYR 64 A THR 67 A THR 67 A SER 22 A SER 22 A VAL 25 A VAL 25 A VAL 87 A VAL 87 A VAL 92 A VAL 92 A GLY 72 A GLY 72 A LYS 77 A LYS 77 OXIDIZED COPPER COORDINATION Unknown 4 BINDING SITE FOR RESIDUE CU A 125 A CU 125 Software 4 A HIS 40 A HIS 40 4 1_555 A CYS 78 A CYS 78 4 1_555 A HIS 81 A HIS 81 4 1_555 A MET 86 A MET 86 4 1_555 A HIS 40 A HIS 40 4 1_555 A CYS 78 A CYS 78 4 1_555 A HIS 81 A HIS 81 4 1_555 A MET 86 A MET 86 4 1_555 19 P 21 21 21