0.015207
0.000000
0.000000
0.000000
0.009891
0.000000
0.000000
0.000000
0.014278
0.00000
0.00000
0.00000
Tan, K.
Casasnovas, J.M.
Liu, J.H.
Briskin, M.J.
Springer, T.A.
Wang, J.-H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
65.760
101.100
70.040
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
R
C
N
251
R
C
N
252
R
C
N
253
S
C
N
254
R
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
R
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
N
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
UK
Structure
STRUE6
2005
0969-2126
6
793
801
10.1016/S0969-2126(98)00080-X
9655832
The structure of immunoglobulin superfamily domains 1 and 2 of MAdCAM-1 reveals novel features important for integrin recognition.
1998
US
J.Immunol.
JOIMA3
0952
0022-1767
156
2851
2857
Human Mucosal Addressin Cell Adhesion Molecule-1(Ma Demonstrates Structural and Functional Similarities Alpha4Beta7-Integrin Binding Domains of Murine Madc But Extreme Divergence of Mucin-Like Sequence
1996
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
78
301
314
Traffic Signals for Lymphocyte Recirculation and Le Emigration
1994
10.2210/pdb1bqs/pdb
pdb_00001bqs
NAG A 401 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
DOUBLE FOCUSED MIRROR
IMAGE PLATE
1997-02-10
MARRESEARCH
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
22118.039
PROTEIN (MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1)
EXTRACELLULAR REGION WITH TWO IG-LIKE DOMAINS
1
nat
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
18.015
water
79
nat
water
MADCAM-1
no
no
VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT
FQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL
FRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPE
VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT
FQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL
FRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
HEMATOPOIETIC AND ENDOTHELIAL CELLS
9606
Homo sapiens
PBJ5-GS-MADCAM-1
1
2.63
50
VAPOR DIFFUSION, HANGING DROP
PROTEIN SOLUTION:17 MG/ML. CRYSTALLIZATION SOLUTION: 10% PEG 400,
0.5M LI2SO4, PH 7.5-8.0., VAPOR DIFFUSION, HANGING DROP
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_validate_chiral
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Advisory
Atomic model
Data collection
Database references
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Structure summary
1
0
1999-08-13
1
1
2008-04-27
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-12-27
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.id
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
BNL
Y
RCSB
1998-08-18
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HOH
water
MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1 (MADCAM-1) IS
IMPORTANT IN LYMPHOCYTE HOMING TO MUCOSAL TISSUES. HUMAN
MADCAM-1 CONTAINS TWO IG-LIKE DOMAINS, A MUCIN-LIKE REGION,
A TRANSMEMBRANE DOMAIN AND A CYTOPLASMIC DOMAIN. IT HAS A
UNIQUE DUAL FUNCTION AMONG ADHESION MOLECULES. IT BINDS THE
INTEGRIN ALPHA4BETA7IG-LIKE DOMAINS, AND WHEN APPROPRIATE,
O-GLYCOSYLATED MOLECULES BIND THROUGH ITS MUCIN-LIKE
REGION.
THE FIVE C-TERMINAL RESIDUES (PTSPE) FORM THE BEGINNING OF
THE MUCIN-LIKE DOMAIN.
NAG
401
2
NAG
NAG
401
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
275
3
HOH
HOH
275
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
280
3
HOH
HOH
280
A
HOH
281
3
HOH
HOH
281
A
HOH
282
3
HOH
HOH
282
A
HOH
283
3
HOH
HOH
283
A
HOH
284
3
HOH
HOH
284
A
HOH
285
3
HOH
HOH
285
A
HOH
286
3
HOH
HOH
286
A
HOH
287
3
HOH
HOH
287
A
HOH
288
3
HOH
HOH
288
A
HOH
289
3
HOH
HOH
289
A
HOH
290
3
HOH
HOH
290
A
HOH
291
3
HOH
HOH
291
A
HOH
292
3
HOH
HOH
292
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
296
3
HOH
HOH
296
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
299
3
HOH
HOH
299
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
VAL
1
n
1
VAL
1
A
LYS
2
n
2
LYS
2
A
PRO
3
n
3
PRO
3
A
LEU
4
n
4
LEU
4
A
GLN
5
n
5
GLN
5
A
VAL
6
n
6
VAL
6
A
GLU
7
n
7
GLU
7
A
PRO
8
n
8
PRO
8
A
PRO
9
n
9
PRO
9
A
GLU
10
n
10
GLU
10
A
PRO
11
n
11
PRO
11
A
VAL
12
n
12
VAL
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
VAL
15
n
15
VAL
15
A
ALA
16
n
16
ALA
16
A
LEU
17
n
17
LEU
17
A
GLY
18
n
18
GLY
18
A
ALA
19
n
19
ALA
19
A
SER
20
n
20
SER
20
A
ARG
21
n
21
ARG
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
THR
24
n
24
THR
24
A
CYS
25
n
25
CYS
25
A
ARG
26
n
26
ARG
26
A
LEU
27
n
27
LEU
27
A
ALA
28
n
28
ALA
28
A
CYS
29
n
29
CYS
29
A
ALA
30
n
30
ALA
30
A
ASP
31
n
31
ASP
31
A
ARG
32
n
32
ARG
32
A
GLY
33
n
33
GLY
33
A
ALA
34
n
34
ALA
34
A
SER
35
n
35
SER
35
A
VAL
36
n
36
VAL
36
A
GLN
37
n
37
GLN
37
A
TRP
38
n
38
TRP
38
A
ARG
39
n
39
ARG
39
A
GLY
40
n
40
GLY
40
A
LEU
41
n
41
LEU
41
A
ASP
42
n
42
ASP
42
A
THR
43
n
43
THR
43
A
SER
44
n
44
SER
44
A
LEU
45
n
45
LEU
45
A
GLY
46
n
46
GLY
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
GLN
49
n
49
GLN
49
A
SER
50
n
50
SER
50
A
ASP
51
n
51
ASP
51
A
THR
52
n
52
THR
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
SER
55
n
55
SER
55
A
VAL
56
n
56
VAL
56
A
LEU
57
n
57
LEU
57
A
THR
58
n
58
THR
58
A
VAL
59
n
59
VAL
59
A
ARG
60
n
60
ARG
60
A
ASN
61
n
61
ASN
61
A
ALA
62
n
62
ALA
62
A
SER
63
n
63
SER
63
A
LEU
64
n
64
LEU
64
A
SER
65
n
65
SER
65
A
ALA
66
n
66
ALA
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
THR
69
n
69
THR
69
A
ARG
70
n
70
ARG
70
A
VAL
71
n
71
VAL
71
A
CYS
72
n
72
CYS
72
A
VAL
73
n
73
VAL
73
A
GLY
74
n
74
GLY
74
A
SER
75
n
75
SER
75
A
CYS
76
n
76
CYS
76
A
GLY
77
n
77
GLY
77
A
GLY
78
n
78
GLY
78
A
ARG
79
n
79
ARG
79
A
THR
80
n
80
THR
80
A
PHE
81
n
81
PHE
81
A
GLN
82
n
82
GLN
82
A
HIS
83
n
83
HIS
83
A
THR
84
n
84
THR
84
A
VAL
85
n
85
VAL
85
A
GLN
86
n
86
GLN
86
A
LEU
87
n
87
LEU
87
A
LEU
88
n
88
LEU
88
A
VAL
89
n
89
VAL
89
A
TYR
90
n
90
TYR
90
A
ALA
91
n
91
ALA
91
A
PHE
92
n
92
PHE
92
A
PRO
93
n
93
PRO
93
A
ASN
94
n
94
ASN
94
A
GLN
95
n
95
GLN
95
A
LEU
96
n
96
LEU
96
A
THR
97
n
97
THR
97
A
VAL
98
n
98
VAL
98
A
SER
99
n
99
SER
99
A
PRO
100
n
100
PRO
100
A
ALA
101
n
101
ALA
101
A
ALA
102
n
102
ALA
102
A
LEU
103
n
103
LEU
103
A
VAL
104
n
104
VAL
104
A
PRO
105
n
105
PRO
105
A
GLY
106
n
106
GLY
106
A
ASP
107
n
107
ASP
107
A
PRO
108
n
108
PRO
108
A
GLU
109
n
109
GLU
109
A
VAL
110
n
110
VAL
110
A
ALA
111
n
111
ALA
111
A
CYS
112
n
112
CYS
112
A
THR
113
n
113
THR
113
A
ALA
114
n
114
ALA
114
A
HIS
115
n
115
HIS
115
A
LYS
116
n
116
LYS
116
A
VAL
117
n
117
VAL
117
A
THR
118
n
118
THR
118
A
PRO
119
n
119
PRO
119
A
VAL
120
n
120
VAL
120
A
ASP
121
n
121
ASP
121
A
PRO
122
n
122
PRO
122
A
ASN
123
n
123
ASN
123
A
ALA
124
n
124
ALA
124
A
LEU
125
n
125
LEU
125
A
SER
126
n
126
SER
126
A
PHE
127
n
127
PHE
127
A
SER
128
n
128
SER
128
A
LEU
129
n
129
LEU
129
A
LEU
130
n
130
LEU
130
A
VAL
131
n
131
VAL
131
A
GLY
132
n
132
GLY
132
A
GLY
133
n
133
GLY
133
A
GLN
134
n
134
GLN
134
A
GLU
135
n
135
GLU
135
A
LEU
136
n
136
LEU
136
A
GLU
137
n
137
GLU
137
A
GLY
138
n
138
GLY
138
A
ALA
139
n
139
ALA
139
A
GLN
140
n
140
GLN
140
A
ALA
141
n
141
ALA
141
A
LEU
142
n
142
LEU
142
A
GLY
143
n
143
GLY
143
A
PRO
144
n
144
PRO
144
A
GLU
145
n
145
GLU
145
A
VAL
146
n
146
VAL
146
A
GLN
147
n
147
GLN
147
A
GLU
148
n
148
GLU
148
A
GLU
149
n
149
GLU
149
A
GLU
150
n
150
GLU
150
A
GLU
151
n
151
GLU
151
A
GLU
152
n
152
GLU
152
A
PRO
153
n
153
PRO
153
A
GLN
154
n
154
GLN
154
A
GLY
155
n
155
GLY
155
A
ASP
156
n
156
ASP
156
A
GLU
157
n
157
GLU
157
A
ASP
158
n
158
ASP
158
A
VAL
159
n
159
VAL
159
A
LEU
160
n
160
LEU
160
A
PHE
161
n
161
PHE
161
A
ARG
162
n
162
ARG
162
A
VAL
163
n
163
VAL
163
A
THR
164
n
164
THR
164
A
GLU
165
n
165
GLU
165
A
ARG
166
n
166
ARG
166
A
TRP
167
n
167
TRP
167
A
ARG
168
n
168
ARG
168
A
LEU
169
n
169
LEU
169
A
PRO
170
n
170
PRO
170
A
PRO
171
n
171
PRO
171
A
LEU
172
n
172
LEU
172
A
GLY
173
n
173
GLY
173
A
THR
174
n
174
THR
174
A
PRO
175
n
175
PRO
175
A
VAL
176
n
176
VAL
176
A
PRO
177
n
177
PRO
177
A
PRO
178
n
178
PRO
178
A
ALA
179
n
179
ALA
179
A
LEU
180
n
180
LEU
180
A
TYR
181
n
181
TYR
181
A
CYS
182
n
182
CYS
182
A
GLN
183
n
183
GLN
183
A
ALA
184
n
184
ALA
184
A
THR
185
n
185
THR
185
A
MET
186
n
186
MET
186
A
ARG
187
n
187
ARG
187
A
LEU
188
n
188
LEU
188
A
PRO
189
n
189
PRO
189
A
GLY
190
n
190
GLY
190
A
LEU
191
n
191
LEU
191
A
GLU
192
n
192
GLU
192
A
LEU
193
n
193
LEU
193
A
SER
194
n
194
SER
194
A
HIS
195
n
195
HIS
195
A
ARG
196
n
196
ARG
196
A
GLN
197
n
197
GLN
197
A
ALA
198
n
198
ALA
198
A
ILE
199
n
199
ILE
199
A
PRO
200
n
200
PRO
200
A
VAL
201
n
201
VAL
201
A
LEU
202
n
202
LEU
202
A
HIS
203
n
203
HIS
203
A
SER
204
n
204
SER
204
A
PRO
205
n
205
PRO
205
A
THR
206
n
206
THR
206
A
SER
207
n
207
SER
207
A
PRO
208
n
208
PRO
208
A
GLU
209
n
209
GLU
209
A
author_defined_assembly
1
monomeric
A
ASN
61
GLYCOSYLATION SITE
A
ASN
61
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
5
A
O
GLN
5
A
N
ARG
26
A
N
ARG
26
A
O
ARG
21
A
O
ARG
21
A
N
VAL
59
A
N
VAL
59
A
O
VAL
56
A
O
VAL
56
A
N
GLN
49
A
N
GLN
49
A
O
VAL
13
A
O
VAL
13
A
N
GLN
86
A
N
GLN
86
A
O
ARG
79
A
O
ARG
79
A
N
CYS
76
A
N
CYS
76
A
O
VAL
71
A
O
VAL
71
A
N
ARG
39
A
N
ARG
39
A
O
THR
97
A
O
THR
97
A
N
THR
113
A
N
THR
113
A
O
VAL
110
A
O
VAL
110
A
N
TRP
167
A
N
TRP
167
A
O
LEU
103
A
O
LEU
103
A
N
PRO
200
A
N
PRO
200
A
O
LEU
191
A
O
LEU
191
A
N
LEU
188
A
N
LEU
188
A
O
TYR
181
A
O
TYR
181
A
N
LEU
130
A
N
LEU
130
A
O
GLU
148
A
O
GLU
148
A
N
LEU
160
A
N
LEU
160
1
A
C1
NAG
401
WRONG HAND
1
A
A
O
N
VAL
GLY
104
106
2.19
1
10.30
1.50
119.30
129.60
A
A
A
C
N
CA
GLU
PRO
PRO
152
153
153
Y
1
A
LYS
2
-134.70
-56.30
1
A
GLU
10
-34.06
132.33
1
A
ALA
34
-31.94
128.08
1
A
LEU
41
-159.27
-28.81
1
A
ASP
42
102.27
-69.19
1
A
THR
43
-27.46
-171.17
1
A
SER
44
134.91
-36.52
1
A
LEU
45
117.29
38.64
1
A
ASP
51
95.65
-10.17
1
A
THR
52
-118.08
54.96
1
A
ARG
54
65.05
-98.44
1
A
ASN
61
36.97
52.35
1
A
ALA
62
-37.43
143.29
1
A
PRO
105
-48.61
9.32
1
A
ASP
107
169.04
-45.36
1
A
PRO
108
-25.99
-109.47
1
A
LYS
116
45.40
76.71
1
A
THR
118
179.94
126.57
1
A
ASN
123
78.63
-18.55
1
A
GLN
140
-89.23
-132.25
1
A
ALA
141
170.71
-178.28
1
A
LEU
142
150.90
103.98
1
A
GLU
151
159.22
82.44
1
A
PRO
153
-38.74
144.74
1
A
ASP
158
141.39
178.65
1
A
LEU
160
-138.78
-154.93
1
A
LEU
172
98.76
-104.45
1
A
VAL
176
-39.77
131.97
1
A
HIS
203
-68.65
70.28
1
A
PRO
205
-54.86
92.76
1
A
THR
206
-111.40
-156.79
1
A
SER
207
88.23
-26.82
1
A
PRO
208
-94.90
-147.42
PROTEIN_REP.PARAM
TOPHCSDX.PRO
PARAM3_MOD.CHO
TOPH19.SOL
44.5
0.28
0.223
0.223
2.2
15.0
10955
10.0
92.2
RANDOM
1
2.0
MIR
0.43
2.2
15.0
79
1645
14
0
1552
0.012
2.087
1.5
2.0
2.0
2.5
0.369
0.327
2.3
1092
8
10.0
95.5
2.2
15
1BQS
11229
3
0.075
1
22.3
7.8
92.2
0.236
2.20
2.28
6.4
4.3
96.1
data reduction
DENZO
data scaling
SCALEPACK
model building
CCP4
refinement
X-PLOR
3.1
phasing
CCP4
THE CRYSTAL STRUCTURE OF MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1 (MADCAM-1)
1
N
N
2
N
N
3
N
N
A
LEU
64
A
LEU
64
HELX_P
A
ALA
66
A
ALA
66
5
1
3
disulf
2.022
A
CYS
25
A
SG
CYS
25
1_555
A
CYS
72
A
SG
CYS
72
1_555
disulf
2.031
A
CYS
29
A
SG
CYS
29
1_555
A
CYS
76
A
SG
CYS
76
1_555
disulf
2.033
A
CYS
112
A
SG
CYS
112
1_555
A
CYS
182
A
SG
CYS
182
1_555
covale
1.458
one
N-Glycosylation
A
ASN
61
A
ND2
ASN
61
1_555
A
NAG
401
B
C1
NAG
1_555
MEMBRANE PROTEIN
CELL ADHESION PROTEIN, MADCAM-1, IMMUNOGLOBULIN FOLD, I-SET FOLD, CELL ADHESION GLYCOPROTEIN, INTEGRIN RECOGINITION, MEMBRANE PROTEIN
A
LYS
2
A
LYS
2
1
A
PRO
3
A
PRO
3
-0.55
A
GLU
7
A
GLU
7
1
A
PRO
8
A
PRO
8
0.31
A
SER
99
A
SER
99
1
A
PRO
100
A
PRO
100
0.42
A
THR
118
A
THR
118
1
A
PRO
119
A
PRO
119
-0.04
A
THR
174
A
THR
174
1
A
PRO
175
A
PRO
175
0.00
MADCA_HUMAN
UNP
1
Q13477
23
231
1BQS
1
209
Q13477
A
1
1
209
1
ASP
conflict
ASN
94
1BQS
A
Q13477
UNP
116
94
4
4
3
4
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
4
A
LEU
4
A
GLU
7
A
GLU
7
A
ARG
21
A
ARG
21
A
LEU
27
A
LEU
27
A
SER
55
A
SER
55
A
VAL
59
A
VAL
59
A
GLY
46
A
GLY
46
A
SER
50
A
SER
50
A
VAL
12
A
VAL
12
A
ALA
16
A
ALA
16
A
ARG
79
A
ARG
79
A
TYR
90
A
TYR
90
A
GLY
68
A
GLY
68
A
CYS
76
A
CYS
76
A
SER
35
A
SER
35
A
ARG
39
A
ARG
39
A
LEU
96
A
LEU
96
A
SER
99
A
SER
99
A
GLU
109
A
GLU
109
A
ALA
114
A
ALA
114
A
VAL
163
A
VAL
163
A
ARG
168
A
ARG
168
A
ALA
102
A
ALA
102
A
VAL
104
A
VAL
104
A
LEU
191
A
LEU
191
A
LEU
202
A
LEU
202
A
ALA
179
A
ALA
179
A
LEU
188
A
LEU
188
A
SER
126
A
SER
126
A
VAL
131
A
VAL
131
A
GLN
147
A
GLN
147
A
GLU
150
A
GLU
150
A
ASP
158
A
ASP
158
A
PHE
161
A
PHE
161
20
C 2 2 21