0.022080 0.000000 0.000000 0.000000 0.014832 0.000000 0.000000 0.000000 0.006110 0.00000 0.00000 0.00000 Parry, M.A.A. Bode, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 45.290 67.420 163.670 C14 H28 Cl N6 O5 1 395.862 L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 6 1195 1206 10.1016/S0969-2126(98)00119-1 9753698 The crystal structure of the novel snake venom plasminogen activator TSV-PA: a prototype structure for snake venom serine proteinases. 1998 10.2210/pdb1bqy/pdb pdb_00001bqy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293.0 1 MIRRORS IMAGE PLATE 1997-04 MARRESEARCH CU FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 25634.023 PLASMINOGEN ACTIVATOR 2 man polymer CHLOROMETHYLKETONE INHIBITOR COVALENTLY BOUND TO THE ACTIVE SITE SER 195 AND HIS 57 395.862 L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide 2 syn non-polymer 18.015 water 162 nat water TSV-PA no no VFGGDECNINEHRSLVVLFNSNGFLCGGTLINQDWVVTAAHCDSNNFQLLFGVHSKKILNEDEQTRDPKEKFFCPNRKKD DEVDKDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGSVCRIMGWGKTIPTKEIYPDVPHCANINILDHAVCRTAYSWRQVA NTTLCAGILQGGRDTCHFDSGGPLICNGIFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSIIAGNKDATCPP VFGGDECNINEHRSLVVLFNSNGFLCGGTLINQDWVVTAAHCDSNNFQLLFGVHSKKILNEDEQTRDPKEKFFCPNRKKD DEVDKDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGSVCRIMGWGKTIPTKEIYPDVPHCANINILDHAVCRTAYSWRQVA NTTLCAGILQGGRDTCHFDSGGPLICNGIFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSIIAGNKDATCPP A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Stejneger's pit viper Viridovipera Escherichia sample 39682 VENOM GLAND Viridovipera stejnegeri 562 Escherichia coli PET 1 2.60 50.0 database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Database references Derived calculations Refinement description 1 0 1999-08-20 1 1 2008-03-24 1 2 2011-07-13 1 3 2013-02-27 1 4 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-08-20 REL 0GJ L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide HOH water THE UNBOUND FORM OF THE INHIBITOR IS GLU-GLY-ARG-CMK-CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS: 1) A COVALENT BOND TO SER 195 FORMING A HEMIKETAL AR7 AND 2) A COVALENT BOND TO NE2 OF HIS 57. RESIDUE GLU OF THE INHIBITOR IS MODELED WITH ZERO OCCUPANCY. 3PTB PDB ENTRY 3PTB PDB experimental model Inhibitor GLU-GLY-ARG-CHLOROMETHYL KETONE Peptide-like GLU 1 2 0GJ 0GJ 1 A GLU 1 2 0GJ 0GJ 1 B HOH 474 3 HOH HOH 474 A HOH 475 3 HOH HOH 475 A HOH 478 3 HOH HOH 478 A HOH 479 3 HOH HOH 479 A HOH 481 3 HOH HOH 481 A HOH 488 3 HOH HOH 488 A HOH 489 3 HOH HOH 489 A HOH 491 3 HOH HOH 491 A HOH 492 3 HOH HOH 492 A HOH 496 3 HOH HOH 496 A HOH 497 3 HOH HOH 497 A HOH 498 3 HOH HOH 498 A HOH 500 3 HOH HOH 500 A HOH 501 3 HOH HOH 501 A HOH 509 3 HOH HOH 509 A HOH 522 3 HOH HOH 522 A HOH 526 3 HOH HOH 526 A HOH 527 3 HOH HOH 527 A HOH 529 3 HOH HOH 529 A HOH 532 3 HOH HOH 532 A HOH 533 3 HOH HOH 533 A HOH 537 3 HOH HOH 537 A HOH 538 3 HOH HOH 538 A HOH 539 3 HOH HOH 539 A HOH 541 3 HOH HOH 541 A HOH 543 3 HOH HOH 543 A HOH 544 3 HOH HOH 544 A HOH 545 3 HOH HOH 545 A HOH 553 3 HOH HOH 553 A HOH 555 3 HOH HOH 555 A HOH 558 3 HOH HOH 558 A HOH 562 3 HOH HOH 562 A HOH 565 3 HOH HOH 565 A HOH 568 3 HOH HOH 568 A HOH 569 3 HOH HOH 569 A HOH 572 3 HOH HOH 572 A HOH 574 3 HOH HOH 574 A HOH 576 3 HOH HOH 576 A HOH 582 3 HOH HOH 582 A HOH 585 3 HOH HOH 585 A HOH 595 3 HOH HOH 595 A HOH 598 3 HOH HOH 598 A HOH 599 3 HOH HOH 599 A HOH 600 3 HOH HOH 600 A HOH 602 3 HOH HOH 602 A HOH 603 3 HOH HOH 603 A HOH 606 3 HOH HOH 606 A HOH 608 3 HOH HOH 608 A HOH 612 3 HOH HOH 612 A HOH 617 3 HOH HOH 617 A HOH 619 3 HOH HOH 619 A HOH 626 3 HOH HOH 626 A HOH 633 3 HOH HOH 633 A HOH 635 3 HOH HOH 635 A HOH 636 3 HOH HOH 636 A HOH 647 3 HOH HOH 647 A HOH 648 3 HOH HOH 648 A HOH 649 3 HOH HOH 649 A HOH 654 3 HOH HOH 654 A HOH 655 3 HOH HOH 655 A HOH 656 3 HOH HOH 656 A HOH 657 3 HOH HOH 657 A HOH 901 3 HOH HOH 901 A HOH 902 3 HOH HOH 902 A HOH 903 3 HOH HOH 903 A HOH 904 3 HOH HOH 904 A HOH 907 3 HOH HOH 907 A HOH 908 3 HOH HOH 908 A HOH 909 3 HOH HOH 909 A HOH 911 3 HOH HOH 911 A HOH 912 3 HOH HOH 912 A HOH 913 3 HOH HOH 913 A HOH 914 3 HOH HOH 914 A HOH 915 3 HOH HOH 915 A HOH 918 3 HOH HOH 918 A HOH 920 3 HOH HOH 920 A HOH 922 3 HOH HOH 922 A HOH 924 3 HOH HOH 924 A HOH 926 3 HOH HOH 926 A HOH 927 3 HOH HOH 927 A HOH 928 3 HOH HOH 928 A HOH 931 3 HOH HOH 931 A HOH 936 3 HOH HOH 936 A HOH 952 3 HOH HOH 952 A HOH 469 3 HOH HOH 469 B HOH 470 3 HOH HOH 470 B HOH 471 3 HOH HOH 471 B HOH 472 3 HOH HOH 472 B HOH 473 3 HOH HOH 473 B HOH 476 3 HOH HOH 476 B HOH 477 3 HOH HOH 477 B HOH 480 3 HOH HOH 480 B HOH 482 3 HOH HOH 482 B HOH 483 3 HOH HOH 483 B HOH 484 3 HOH HOH 484 B HOH 485 3 HOH HOH 485 B HOH 486 3 HOH HOH 486 B HOH 490 3 HOH HOH 490 B HOH 493 3 HOH HOH 493 B HOH 495 3 HOH HOH 495 B HOH 499 3 HOH HOH 499 B HOH 503 3 HOH HOH 503 B HOH 504 3 HOH HOH 504 B HOH 505 3 HOH HOH 505 B HOH 507 3 HOH HOH 507 B HOH 508 3 HOH HOH 508 B HOH 510 3 HOH HOH 510 B HOH 511 3 HOH HOH 511 B HOH 513 3 HOH HOH 513 B HOH 514 3 HOH HOH 514 B HOH 517 3 HOH HOH 517 B HOH 520 3 HOH HOH 520 B HOH 525 3 HOH HOH 525 B HOH 530 3 HOH HOH 530 B HOH 534 3 HOH HOH 534 B HOH 535 3 HOH HOH 535 B HOH 536 3 HOH HOH 536 B HOH 540 3 HOH HOH 540 B HOH 542 3 HOH HOH 542 B HOH 548 3 HOH HOH 548 B HOH 549 3 HOH HOH 549 B HOH 550 3 HOH HOH 550 B HOH 551 3 HOH HOH 551 B HOH 552 3 HOH HOH 552 B HOH 556 3 HOH HOH 556 B HOH 559 3 HOH HOH 559 B HOH 560 3 HOH HOH 560 B HOH 561 3 HOH HOH 561 B HOH 567 3 HOH HOH 567 B HOH 570 3 HOH HOH 570 B HOH 575 3 HOH HOH 575 B HOH 580 3 HOH HOH 580 B HOH 583 3 HOH HOH 583 B HOH 584 3 HOH HOH 584 B HOH 587 3 HOH HOH 587 B HOH 588 3 HOH HOH 588 B HOH 589 3 HOH HOH 589 B HOH 594 3 HOH HOH 594 B HOH 601 3 HOH HOH 601 B HOH 605 3 HOH HOH 605 B HOH 609 3 HOH HOH 609 B HOH 611 3 HOH HOH 611 B HOH 614 3 HOH HOH 614 B HOH 615 3 HOH HOH 615 B HOH 616 3 HOH HOH 616 B HOH 627 3 HOH HOH 627 B HOH 631 3 HOH HOH 631 B HOH 632 3 HOH HOH 632 B HOH 634 3 HOH HOH 634 B HOH 637 3 HOH HOH 637 B HOH 638 3 HOH HOH 638 B HOH 643 3 HOH HOH 643 B HOH 646 3 HOH HOH 646 B HOH 653 3 HOH HOH 653 B HOH 937 3 HOH HOH 937 B HOH 940 3 HOH HOH 940 B HOH 941 3 HOH HOH 941 B HOH 944 3 HOH HOH 944 B HOH 945 3 HOH HOH 945 B HOH 946 3 HOH HOH 946 B HOH 947 3 HOH HOH 947 B HOH 953 3 HOH HOH 953 B VAL 16 n 1 VAL 16 A PHE 17 n 2 PHE 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A ASP 20 n 5 ASP 20 A GLU 21 n 6 GLU 21 A CYS 22 n 7 CYS 22 A ASN 23 n 8 ASN 23 A ILE 24 n 9 ILE 24 A ASN 25 n 10 ASN 25 A GLU 26 n 11 GLU 26 A HIS 27 n 12 HIS 27 A ARG 28 n 13 ARG 28 A SER 29 n 14 SER 29 A LEU 30 n 15 LEU 30 A VAL 31 n 16 VAL 31 A VAL 32 n 17 VAL 32 A LEU 33 n 18 LEU 33 A PHE 34 n 19 PHE 34 A ASN 35 n 20 ASN 35 A SER 36 n 21 SER 36 A ASN 38 n 22 ASN 38 A GLY 39 n 23 GLY 39 A PHE 40 n 24 PHE 40 A LEU 41 n 25 LEU 41 A CYS 42 n 26 CYS 42 A GLY 43 n 27 GLY 43 A GLY 44 n 28 GLY 44 A THR 45 n 29 THR 45 A LEU 46 n 30 LEU 46 A ILE 47 n 31 ILE 47 A ASN 48 n 32 ASN 48 A GLN 49 n 33 GLN 49 A ASP 50 n 34 ASP 50 A TRP 51 n 35 TRP 51 A VAL 52 n 36 VAL 52 A VAL 53 n 37 VAL 53 A THR 54 n 38 THR 54 A ALA 55 n 39 ALA 55 A ALA 56 n 40 ALA 56 A HIS 57 n 41 HIS 57 A CYS 58 n 42 CYS 58 A ASP 59 n 43 ASP 59 A SER 60 n 44 SER 60 A ASN 62 n 45 ASN 62 A ASN 63 n 46 ASN 63 A PHE 64 n 47 PHE 64 A GLN 65 n 48 GLN 65 A LEU 66 n 49 LEU 66 A LEU 67 n 50 LEU 67 A PHE 68 n 51 PHE 68 A GLY 69 n 52 GLY 69 A VAL 70 n 53 VAL 70 A HIS 71 n 54 HIS 71 A SER 72 n 55 SER 72 A LYS 73 n 56 LYS 73 A LYS 74 n 57 LYS 74 A ILE 75 n 58 ILE 75 A LEU 76 n 59 LEU 76 A ASN 77 n 60 ASN 77 A GLU 78 n 61 GLU 78 A ASP 79 n 62 ASP 79 A GLU 80 n 63 GLU 80 A GLN 81 n 64 GLN 81 A THR 82 n 65 THR 82 A ARG 83 n 66 ARG 83 A ASP 84 n 67 ASP 84 A PRO 85 n 68 PRO 85 A LYS 86 n 69 LYS 86 A GLU 87 n 70 GLU 87 A LYS 88 n 71 LYS 88 A PHE 89 n 72 PHE 89 A PHE 90 n 73 PHE 90 A CYS 91 n 74 CYS 91 A PRO 92 n 75 PRO 92 A ASN 93 n 76 ASN 93 A ARG 94 n 77 ARG 94 A LYS 95 n 78 LYS 95 A LYS 95 n 79 A LYS 95 A ASP 96 n 80 ASP 96 A ASP 97 n 81 ASP 97 A GLU 98 n 82 GLU 98 A VAL 99 n 83 VAL 99 A ASP 100 n 84 ASP 100 A LYS 101 n 85 LYS 101 A ASP 102 n 86 ASP 102 A ILE 103 n 87 ILE 103 A MET 104 n 88 MET 104 A LEU 105 n 89 LEU 105 A ILE 106 n 90 ILE 106 A LYS 107 n 91 LYS 107 A LEU 108 n 92 LEU 108 A ASP 109 n 93 ASP 109 A SER 110 n 94 SER 110 A SER 111 n 95 SER 111 A VAL 112 n 96 VAL 112 A SER 113 n 97 SER 113 A ASN 114 n 98 ASN 114 A SER 115 n 99 SER 115 A GLU 116 n 100 GLU 116 A HIS 117 n 101 HIS 117 A ILE 118 n 102 ILE 118 A ALA 119 n 103 ALA 119 A PRO 120 n 104 PRO 120 A LEU 121 n 105 LEU 121 A SER 122 n 106 SER 122 A LEU 123 n 107 LEU 123 A PRO 124 n 108 PRO 124 A SER 125 n 109 SER 125 A SER 127 n 110 SER 127 A PRO 128 n 111 PRO 128 A PRO 129 n 112 PRO 129 A SER 131 n 113 SER 131 A VAL 132 n 114 VAL 132 A GLY 133 n 115 GLY 133 A SER 134 n 116 SER 134 A VAL 135 n 117 VAL 135 A CYS 136 n 118 CYS 136 A ARG 137 n 119 ARG 137 A ILE 138 n 120 ILE 138 A MET 139 n 121 MET 139 A GLY 140 n 122 GLY 140 A TRP 141 n 123 TRP 141 A GLY 142 n 124 GLY 142 A LYS 143 n 125 LYS 143 A THR 144 n 126 THR 144 A ILE 145 n 127 ILE 145 A PRO 146 n 128 PRO 146 A THR 147 n 129 THR 147 A LYS 148 n 130 LYS 148 A GLU 149 n 131 GLU 149 A ILE 150 n 132 ILE 150 A TYR 151 n 133 TYR 151 A PRO 152 n 134 PRO 152 A ASP 153 n 135 ASP 153 A VAL 154 n 136 VAL 154 A PRO 155 n 137 PRO 155 A HIS 156 n 138 HIS 156 A CYS 157 n 139 CYS 157 A ALA 158 n 140 ALA 158 A ASN 159 n 141 ASN 159 A ILE 160 n 142 ILE 160 A ASN 161 n 143 ASN 161 A ILE 162 n 144 ILE 162 A LEU 163 n 145 LEU 163 A ASP 164 n 146 ASP 164 A HIS 165 n 147 HIS 165 A ALA 166 n 148 ALA 166 A VAL 167 n 149 VAL 167 A CYS 168 n 150 CYS 168 A ARG 169 n 151 ARG 169 A THR 170 n 152 THR 170 A ALA 171 n 153 ALA 171 A TYR 172 n 154 TYR 172 A SER 172 n 155 A SER 172 A TRP 173 n 156 TRP 173 A ARG 174 n 157 ARG 174 A GLN 175 n 158 GLN 175 A VAL 176 n 159 VAL 176 A ALA 177 n 160 ALA 177 A ASN 178 n 161 ASN 178 A THR 179 n 162 THR 179 A THR 180 n 163 THR 180 A LEU 181 n 164 LEU 181 A CYS 182 n 165 CYS 182 A ALA 183 n 166 ALA 183 A GLY 184 n 167 GLY 184 A ILE 185 n 168 ILE 185 A LEU 186 n 169 LEU 186 A GLN 186 n 170 A GLN 186 A GLY 186 n 171 B GLY 186 A GLY 187 n 172 GLY 187 A ARG 188 n 173 ARG 188 A ASP 189 n 174 ASP 189 A THR 190 n 175 THR 190 A CYS 191 n 176 CYS 191 A HIS 192 n 177 HIS 192 A PHE 193 n 178 PHE 193 A ASP 194 n 179 ASP 194 A SER 195 n 180 SER 195 A GLY 196 n 181 GLY 196 A GLY 197 n 182 GLY 197 A PRO 198 n 183 PRO 198 A LEU 199 n 184 LEU 199 A ILE 200 n 185 ILE 200 A CYS 201 n 186 CYS 201 A ASN 202 n 187 ASN 202 A GLY 207 n 188 GLY 207 A ILE 208 n 189 ILE 208 A PHE 209 n 190 PHE 209 A GLN 210 n 191 GLN 210 A GLY 211 n 192 GLY 211 A ILE 212 n 193 ILE 212 A VAL 213 n 194 VAL 213 A SER 214 n 195 SER 214 A TRP 215 n 196 TRP 215 A GLY 216 n 197 GLY 216 A GLY 217 n 198 GLY 217 A HIS 218 n 199 HIS 218 A PRO 219 n 200 PRO 219 A CYS 220 n 201 CYS 220 A GLY 221 n 202 GLY 221 A GLN 221 n 203 A GLN 221 A PRO 222 n 204 PRO 222 A GLY 223 n 205 GLY 223 A GLU 224 n 206 GLU 224 A PRO 225 n 207 PRO 225 A GLY 226 n 208 GLY 226 A VAL 227 n 209 VAL 227 A TYR 228 n 210 TYR 228 A THR 229 n 211 THR 229 A LYS 230 n 212 LYS 230 A VAL 231 n 213 VAL 231 A PHE 232 n 214 PHE 232 A ASP 233 n 215 ASP 233 A TYR 234 n 216 TYR 234 A LEU 235 n 217 LEU 235 A ASP 236 n 218 ASP 236 A TRP 237 n 219 TRP 237 A ILE 238 n 220 ILE 238 A LYS 239 n 221 LYS 239 A SER 240 n 222 SER 240 A ILE 241 n 223 ILE 241 A ILE 242 n 224 ILE 242 A ALA 243 n 225 ALA 243 A GLY 244 n 226 GLY 244 A ASN 245 n 227 ASN 245 A LYS 245 n 228 A LYS 245 A ASP 245 n 229 B ASP 245 A ALA 245 n 230 C ALA 245 A THR 245 n 231 D THR 245 A CYS 245 n 232 E CYS 245 A PRO 245 n 233 F PRO 245 A PRO 245 n 234 G PRO 245 A VAL 16 n 1 VAL 16 B PHE 17 n 2 PHE 17 B GLY 18 n 3 GLY 18 B GLY 19 n 4 GLY 19 B ASP 20 n 5 ASP 20 B GLU 21 n 6 GLU 21 B CYS 22 n 7 CYS 22 B ASN 23 n 8 ASN 23 B ILE 24 n 9 ILE 24 B ASN 25 n 10 ASN 25 B GLU 26 n 11 GLU 26 B HIS 27 n 12 HIS 27 B ARG 28 n 13 ARG 28 B SER 29 n 14 SER 29 B LEU 30 n 15 LEU 30 B VAL 31 n 16 VAL 31 B VAL 32 n 17 VAL 32 B LEU 33 n 18 LEU 33 B PHE 34 n 19 PHE 34 B ASN 35 n 20 ASN 35 B SER 36 n 21 SER 36 B ASN 38 n 22 ASN 38 B GLY 39 n 23 GLY 39 B PHE 40 n 24 PHE 40 B LEU 41 n 25 LEU 41 B CYS 42 n 26 CYS 42 B GLY 43 n 27 GLY 43 B GLY 44 n 28 GLY 44 B THR 45 n 29 THR 45 B LEU 46 n 30 LEU 46 B ILE 47 n 31 ILE 47 B ASN 48 n 32 ASN 48 B GLN 49 n 33 GLN 49 B ASP 50 n 34 ASP 50 B TRP 51 n 35 TRP 51 B VAL 52 n 36 VAL 52 B VAL 53 n 37 VAL 53 B THR 54 n 38 THR 54 B ALA 55 n 39 ALA 55 B ALA 56 n 40 ALA 56 B HIS 57 n 41 HIS 57 B CYS 58 n 42 CYS 58 B ASP 59 n 43 ASP 59 B SER 60 n 44 SER 60 B ASN 62 n 45 ASN 62 B ASN 63 n 46 ASN 63 B PHE 64 n 47 PHE 64 B GLN 65 n 48 GLN 65 B LEU 66 n 49 LEU 66 B LEU 67 n 50 LEU 67 B PHE 68 n 51 PHE 68 B GLY 69 n 52 GLY 69 B VAL 70 n 53 VAL 70 B HIS 71 n 54 HIS 71 B SER 72 n 55 SER 72 B LYS 73 n 56 LYS 73 B LYS 74 n 57 LYS 74 B ILE 75 n 58 ILE 75 B LEU 76 n 59 LEU 76 B ASN 77 n 60 ASN 77 B GLU 78 n 61 GLU 78 B ASP 79 n 62 ASP 79 B GLU 80 n 63 GLU 80 B GLN 81 n 64 GLN 81 B THR 82 n 65 THR 82 B ARG 83 n 66 ARG 83 B ASP 84 n 67 ASP 84 B PRO 85 n 68 PRO 85 B LYS 86 n 69 LYS 86 B GLU 87 n 70 GLU 87 B LYS 88 n 71 LYS 88 B PHE 89 n 72 PHE 89 B PHE 90 n 73 PHE 90 B CYS 91 n 74 CYS 91 B PRO 92 n 75 PRO 92 B ASN 93 n 76 ASN 93 B ARG 94 n 77 ARG 94 B LYS 95 n 78 LYS 95 B LYS 95 n 79 A LYS 95 B ASP 96 n 80 ASP 96 B ASP 97 n 81 ASP 97 B GLU 98 n 82 GLU 98 B VAL 99 n 83 VAL 99 B ASP 100 n 84 ASP 100 B LYS 101 n 85 LYS 101 B ASP 102 n 86 ASP 102 B ILE 103 n 87 ILE 103 B MET 104 n 88 MET 104 B LEU 105 n 89 LEU 105 B ILE 106 n 90 ILE 106 B LYS 107 n 91 LYS 107 B LEU 108 n 92 LEU 108 B ASP 109 n 93 ASP 109 B SER 110 n 94 SER 110 B SER 111 n 95 SER 111 B VAL 112 n 96 VAL 112 B SER 113 n 97 SER 113 B ASN 114 n 98 ASN 114 B SER 115 n 99 SER 115 B GLU 116 n 100 GLU 116 B HIS 117 n 101 HIS 117 B ILE 118 n 102 ILE 118 B ALA 119 n 103 ALA 119 B PRO 120 n 104 PRO 120 B LEU 121 n 105 LEU 121 B SER 122 n 106 SER 122 B LEU 123 n 107 LEU 123 B PRO 124 n 108 PRO 124 B SER 125 n 109 SER 125 B SER 127 n 110 SER 127 B PRO 128 n 111 PRO 128 B PRO 129 n 112 PRO 129 B SER 131 n 113 SER 131 B VAL 132 n 114 VAL 132 B GLY 133 n 115 GLY 133 B SER 134 n 116 SER 134 B VAL 135 n 117 VAL 135 B CYS 136 n 118 CYS 136 B ARG 137 n 119 ARG 137 B ILE 138 n 120 ILE 138 B MET 139 n 121 MET 139 B GLY 140 n 122 GLY 140 B TRP 141 n 123 TRP 141 B GLY 142 n 124 GLY 142 B LYS 143 n 125 LYS 143 B THR 144 n 126 THR 144 B ILE 145 n 127 ILE 145 B PRO 146 n 128 PRO 146 B THR 147 n 129 THR 147 B LYS 148 n 130 LYS 148 B GLU 149 n 131 GLU 149 B ILE 150 n 132 ILE 150 B TYR 151 n 133 TYR 151 B PRO 152 n 134 PRO 152 B ASP 153 n 135 ASP 153 B VAL 154 n 136 VAL 154 B PRO 155 n 137 PRO 155 B HIS 156 n 138 HIS 156 B CYS 157 n 139 CYS 157 B ALA 158 n 140 ALA 158 B ASN 159 n 141 ASN 159 B ILE 160 n 142 ILE 160 B ASN 161 n 143 ASN 161 B ILE 162 n 144 ILE 162 B LEU 163 n 145 LEU 163 B ASP 164 n 146 ASP 164 B HIS 165 n 147 HIS 165 B ALA 166 n 148 ALA 166 B VAL 167 n 149 VAL 167 B CYS 168 n 150 CYS 168 B ARG 169 n 151 ARG 169 B THR 170 n 152 THR 170 B ALA 171 n 153 ALA 171 B TYR 172 n 154 TYR 172 B SER 172 n 155 A SER 172 B TRP 173 n 156 TRP 173 B ARG 174 n 157 ARG 174 B GLN 175 n 158 GLN 175 B VAL 176 n 159 VAL 176 B ALA 177 n 160 ALA 177 B ASN 178 n 161 ASN 178 B THR 179 n 162 THR 179 B THR 180 n 163 THR 180 B LEU 181 n 164 LEU 181 B CYS 182 n 165 CYS 182 B ALA 183 n 166 ALA 183 B GLY 184 n 167 GLY 184 B ILE 185 n 168 ILE 185 B LEU 186 n 169 LEU 186 B GLN 186 n 170 A GLN 186 B GLY 186 n 171 B GLY 186 B GLY 187 n 172 GLY 187 B ARG 188 n 173 ARG 188 B ASP 189 n 174 ASP 189 B THR 190 n 175 THR 190 B CYS 191 n 176 CYS 191 B HIS 192 n 177 HIS 192 B PHE 193 n 178 PHE 193 B ASP 194 n 179 ASP 194 B SER 195 n 180 SER 195 B GLY 196 n 181 GLY 196 B GLY 197 n 182 GLY 197 B PRO 198 n 183 PRO 198 B LEU 199 n 184 LEU 199 B ILE 200 n 185 ILE 200 B CYS 201 n 186 CYS 201 B ASN 202 n 187 ASN 202 B GLY 207 n 188 GLY 207 B ILE 208 n 189 ILE 208 B PHE 209 n 190 PHE 209 B GLN 210 n 191 GLN 210 B GLY 211 n 192 GLY 211 B ILE 212 n 193 ILE 212 B VAL 213 n 194 VAL 213 B SER 214 n 195 SER 214 B TRP 215 n 196 TRP 215 B GLY 216 n 197 GLY 216 B GLY 217 n 198 GLY 217 B HIS 218 n 199 HIS 218 B PRO 219 n 200 PRO 219 B CYS 220 n 201 CYS 220 B GLY 221 n 202 GLY 221 B GLN 221 n 203 A GLN 221 B PRO 222 n 204 PRO 222 B GLY 223 n 205 GLY 223 B GLU 224 n 206 GLU 224 B PRO 225 n 207 PRO 225 B GLY 226 n 208 GLY 226 B VAL 227 n 209 VAL 227 B TYR 228 n 210 TYR 228 B THR 229 n 211 THR 229 B LYS 230 n 212 LYS 230 B VAL 231 n 213 VAL 231 B PHE 232 n 214 PHE 232 B ASP 233 n 215 ASP 233 B TYR 234 n 216 TYR 234 B LEU 235 n 217 LEU 235 B ASP 236 n 218 ASP 236 B TRP 237 n 219 TRP 237 B ILE 238 n 220 ILE 238 B LYS 239 n 221 LYS 239 B SER 240 n 222 SER 240 B ILE 241 n 223 ILE 241 B ILE 242 n 224 ILE 242 B ALA 243 n 225 ALA 243 B GLY 244 n 226 GLY 244 B ASN 245 n 227 ASN 245 B LYS 245 n 228 A LYS 245 B ASP 245 n 229 B ASP 245 B ALA 245 n 230 C ALA 245 B THR 245 n 231 D THR 245 B CYS 245 n 232 E CYS 245 B PRO 245 n 233 F PRO 245 B PRO 245 n 234 G PRO 245 B author_defined_assembly 2 dimeric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_646 -x+1,y-1/2,-z+3/2 crystal symmetry operation 45.2900000000 -33.7100000000 245.5050000000 A O GLN 81 A O GLN 64 A N PHE 68 A N PHE 51 A O GLN 65 A O GLN 48 A N PHE 34 A N PHE 19 A O VAL 31 A O VAL 16 A N GLY 44 A N GLY 28 A O THR 45 A O THR 29 A N VAL 53 A N VAL 37 A O VAL 52 A O VAL 36 A N ILE 106 A N ILE 90 A O LEU 105 A O LEU 89 A N PHE 89 A N PHE 72 A O HIS 156 A O HIS 138 A N GLY 140 A N GLY 122 A O ARG 137 A O ARG 119 A N ILE 200 A N ILE 185 A O LEU 199 A O LEU 184 A N GLY 211 A N GLY 192 A O ILE 212 A O ILE 193 A N THR 229 A N THR 211 A O GLY 226 A O GLY 208 A N ALA 183 A N ALA 166 A O CYS 182 A O CYS 165 A N LEU 163 A N LEU 145 B O GLN 81 B O GLN 64 B N PHE 68 B N PHE 51 B O GLN 65 B O GLN 48 B N PHE 34 B N PHE 19 B O VAL 31 B O VAL 16 B N GLY 44 B N GLY 28 B O VAL 52 B O VAL 36 B N ILE 106 B N ILE 90 B O LEU 105 B O LEU 89 B N PHE 89 B N PHE 72 B O CYS 136 B O CYS 118 B N ILE 160 B N ILE 142 B O ASN 161 B O ASN 143 B N GLY 184 B N GLY 167 B O LEU 181 B O LEU 164 B N TYR 228 B N TYR 210 B O VAL 227 B O VAL 209 B N TRP 215 B N TRP 196 B O ILE 208 B O ILE 189 B N CYS 201 B N CYS 186 1 A CD LYS 95 A CD LYS 78 0 Y 1 A CE LYS 95 A CE LYS 78 0 Y 1 A NZ LYS 95 A NZ LYS 78 0 Y A 1 A CG LYS 95 A CG LYS 79 0 Y A 1 A CD LYS 95 A CD LYS 79 0 Y A 1 A CE LYS 95 A CE LYS 79 0 Y A 1 A NZ LYS 95 A NZ LYS 79 0 Y 1 A CG GLU 98 A CG GLU 82 0 Y 1 A CD GLU 98 A CD GLU 82 0 Y 1 A OE1 GLU 98 A OE1 GLU 82 0 Y 1 A OE2 GLU 98 A OE2 GLU 82 0 Y 1 A CD LYS 148 A CD LYS 130 0 Y 1 A CE LYS 148 A CE LYS 130 0 Y 1 A NZ LYS 148 A NZ LYS 130 0 Y 1 A CD GLU 149 A CD GLU 131 0 Y 1 A OE1 GLU 149 A OE1 GLU 131 0 Y 1 A OE2 GLU 149 A OE2 GLU 131 0 Y 1 A CG GLN 175 A CG GLN 158 0 Y 1 A CD GLN 175 A CD GLN 158 0 Y 1 A OE1 GLN 175 A OE1 GLN 158 0 Y 1 A NE2 GLN 175 A NE2 GLN 158 0 Y 1 A CG HIS 218 A CG HIS 199 0 Y 1 A ND1 HIS 218 A ND1 HIS 199 0 Y 1 A CD2 HIS 218 A CD2 HIS 199 0 Y 1 A CE1 HIS 218 A CE1 HIS 199 0 Y 1 A NE2 HIS 218 A NE2 HIS 199 0 Y A 1 A CD LYS 245 A CD LYS 228 0 Y A 1 A CE LYS 245 A CE LYS 228 0 Y A 1 A NZ LYS 245 A NZ LYS 228 0 Y 1 B CD LYS 95 B CD LYS 78 0 Y 1 B CE LYS 95 B CE LYS 78 0 Y 1 B NZ LYS 95 B NZ LYS 78 0 Y A 1 B CG LYS 95 B CG LYS 79 0 Y A 1 B CD LYS 95 B CD LYS 79 0 Y A 1 B CE LYS 95 B CE LYS 79 0 Y A 1 B NZ LYS 95 B NZ LYS 79 0 Y 1 B CG GLU 98 B CG GLU 82 0 Y 1 B CD GLU 98 B CD GLU 82 0 Y 1 B OE1 GLU 98 B OE1 GLU 82 0 Y 1 B OE2 GLU 98 B OE2 GLU 82 0 Y 1 B CG LYS 148 B CG LYS 130 0 Y 1 B CD LYS 148 B CD LYS 130 0 Y 1 B CE LYS 148 B CE LYS 130 0 Y 1 B NZ LYS 148 B NZ LYS 130 0 Y 1 B CZ ARG 169 B CZ ARG 151 0 Y 1 B NH1 ARG 169 B NH1 ARG 151 0 Y 1 B NH2 ARG 169 B NH2 ARG 151 0 Y 1 B CG GLN 175 B CG GLN 158 0 Y 1 B CD GLN 175 B CD GLN 158 0 Y 1 B OE1 GLN 175 B OE1 GLN 158 0 Y 1 B NE2 GLN 175 B NE2 GLN 158 0 Y 1 B CG HIS 218 B CG HIS 199 0 Y 1 B ND1 HIS 218 B ND1 HIS 199 0 Y 1 B CD2 HIS 218 B CD2 HIS 199 0 Y 1 B CE1 HIS 218 B CE1 HIS 199 0 Y 1 B NE2 HIS 218 B NE2 HIS 199 0 Y A 1 B CG LYS 245 B CG LYS 228 0 Y A 1 B CD LYS 245 B CD LYS 228 0 Y A 1 B CE LYS 245 B CE LYS 228 0 Y A 1 B NZ LYS 245 B NZ LYS 228 0 Y 1 A N 0GJ 1 C N 0GJ 0 N 1 A CA 0GJ 1 C CA 0GJ 0 N 1 A C 0GJ 1 C C 0GJ 0 N 1 A O 0GJ 1 C O 0GJ 0 N 1 A CB 0GJ 1 C CB 0GJ 0 N 1 A CG 0GJ 1 C CG 0GJ 0 N 1 A CD 0GJ 1 C CD 0GJ 0 N 1 A OE1 0GJ 1 C OE1 0GJ 0 N 1 A OE2 0GJ 1 C OE2 0GJ 0 N 1 B N 0GJ 1 D N 0GJ 0 N 1 B CA 0GJ 1 D CA 0GJ 0 N 1 B C 0GJ 1 D C 0GJ 0 N 1 B O 0GJ 1 D O 0GJ 0 N 1 B CB 0GJ 1 D CB 0GJ 0 N 1 B CG 0GJ 1 D CG 0GJ 0 N 1 B CD 0GJ 1 D CD 0GJ 0 N 1 B OE1 0GJ 1 D OE1 0GJ 0 N 1 B OE2 0GJ 1 D OE2 0GJ 0 N 1 A ARG 28 -59.34 -4.06 1 A HIS 71 -122.05 -82.57 1 A ASP 102 -68.41 77.17 1 A ALA 119 -175.89 147.97 1 A GLU 149 -90.95 50.59 1 A THR 179 -85.34 33.64 1 A PHE 193 84.14 3.90 1 B HIS 27 -146.37 42.79 1 B LEU 41 -120.36 -58.48 1 B HIS 71 -133.91 -86.27 1 B TYR 172 -112.03 51.10 1 B THR 179 -86.95 36.89 1 B SER 214 -123.32 -66.22 A 1 B LYS 245 -68.46 6.75 0.258 0.178 0.178 2.50 30.00 861 17215 5.000 95.7 RANDOM 10000000.000 0.0010 1 2.000 MOLECULAR REPLACEMENT PDB ENTRY 3PTB 2.50 30.00 162 3806 50 0 3594 0.009 1.87 1 RESTRAINTS 1 X-RAY DIFFRACTION 2.500 30.000 1BQY 17988 2.000 0.102 1 2.000 97.7 0.444 2.50 2.59 1 82.1 data reduction MOSFLM data scaling SCALA model building X-PLOR 3.8 refinement X-PLOR 3.8 data scaling CCP4 (SCALA) phasing X-PLOR 3.8 Plasminogen activator (TSV-PA) from snake venom 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A ALA 56 A ALA 40 HELX_P A CYS 58 A CYS 42 5 1 3 A HIS 165 A HIS 147 HELX_P A ALA 171 A ALA 153 1 2 7 A VAL 231 A VAL 213 HELX_P A ALA 243 A ALA 225 5 3 13 B ALA 56 B ALA 40 HELX_P B CYS 58 B CYS 42 5 4 3 B HIS 165 B HIS 147 HELX_P B ALA 171 B ALA 153 1 5 7 B VAL 231 B VAL 213 HELX_P B ALA 243 B ALA 225 5 6 13 disulf 2.033 A CYS 22 A SG CYS 7 1_555 A CYS 157 A SG CYS 139 1_555 disulf 2.025 A CYS 42 A SG CYS 26 1_555 A CYS 58 A SG CYS 42 1_555 disulf 2.021 E A CYS 91 A SG CYS 74 1_555 A CYS 245 A SG CYS 232 1_555 disulf 2.035 A CYS 136 A SG CYS 118 1_555 A CYS 201 A SG CYS 186 1_555 disulf 2.030 A CYS 168 A SG CYS 150 1_555 A CYS 182 A SG CYS 165 1_555 disulf 2.028 A CYS 191 A SG CYS 176 1_555 A CYS 220 A SG CYS 201 1_555 disulf 2.035 B CYS 22 B SG CYS 7 1_555 B CYS 157 B SG CYS 139 1_555 disulf 2.026 B CYS 42 B SG CYS 26 1_555 B CYS 58 B SG CYS 42 1_555 disulf 2.029 E B CYS 91 B SG CYS 74 1_555 B CYS 245 B SG CYS 232 1_555 disulf 2.039 B CYS 136 B SG CYS 118 1_555 B CYS 201 B SG CYS 186 1_555 disulf 2.028 B CYS 168 B SG CYS 150 1_555 B CYS 182 B SG CYS 165 1_555 disulf 2.036 B CYS 191 B SG CYS 176 1_555 B CYS 220 B SG CYS 201 1_555 covale 1.493 one A 0GJ 1 C C3 0GJ 1_555 A HIS 57 A NE2 HIS 41 1_555 covale 1.437 none A 0GJ 1 C C2 0GJ 1_555 A SER 195 A OG SER 180 1_555 covale 1.490 one B 0GJ 1 D C3 0GJ 1_555 B HIS 57 B NE2 HIS 41 1_555 covale 1.420 none B 0GJ 1 D C2 0GJ 1_555 B SER 195 B OG SER 180 1_555 HYDROLASE/HYDROLASE INHIBITOR FIBRINOLYSIS, PLASMINOGEN ACTIVATOR, SERINE PROTEINASE, SNAKE VENOM, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, BLOOD CLOTTING A HIS 218 A HIS 199 1 A PRO 219 A PRO 200 0.02 B HIS 218 B HIS 199 1 B PRO 219 B PRO 200 -0.91 A57290 PIR 1 1 A57290 MELIRVLANLLILQLSYAQKSSELVFGGDECNINEHRSLVVLFNSNGFLCGGTLINQDWVVTAAHCDSNNFQLLFGVHSK KILNEDEQTRDPKEKFFCPNRKKDDEVDKDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGSVCRIMGWGKTIPTKEIYPDV PHCANINILDHAVCRTAYSWRQVANTTLCAGILQGGRDTCHFDSGGPLICNGIFQGIVSWGGHPCGQPGEPGVYTKVFDY LDWIKSIIAGNKDATCPP 25 258 1BQY 16 245 A57290 A 1 1 227 25 258 1BQY 16 245 A57290 B 1 1 227 7 7 4 3 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 81 A GLN 64 A ASP 84 A ASP 67 A GLN 65 A GLN 48 A PHE 68 A PHE 51 A LEU 30 A LEU 15 A ASN 35 A ASN 20 A GLY 39 A GLY 23 A ASN 48 A ASN 32 A TRP 51 A TRP 35 A THR 54 A THR 38 A MET 104 A MET 88 A LEU 108 A LEU 92 A PRO 85 A PRO 68 A PHE 89 A PHE 72 A HIS 156 A HIS 138 A ASN 161 A ASN 143 A VAL 135 A VAL 117 A GLY 140 A GLY 122 A PRO 198 A PRO 183 A CYS 201 A CYS 186 A ILE 208 A ILE 189 A TRP 215 A TRP 196 A GLY 226 A GLY 208 A LYS 230 A LYS 212 A THR 180 A THR 163 A GLY 184 A GLY 167 A ASN 161 A ASN 143 A LEU 163 A LEU 145 B GLN 81 B GLN 64 B ASP 84 B ASP 67 B GLN 65 B GLN 48 B PHE 68 B PHE 51 B LEU 30 B LEU 15 B ASN 35 B ASN 20 B GLY 39 B GLY 23 B THR 45 B THR 29 B TRP 51 B TRP 35 B THR 54 B THR 38 B MET 104 B MET 88 B LEU 108 B LEU 92 B PRO 85 B PRO 68 B PHE 89 B PHE 72 B VAL 135 B VAL 117 B GLY 140 B GLY 122 B HIS 156 B HIS 138 B LEU 163 B LEU 145 B THR 180 B THR 163 B GLY 184 B GLY 167 B GLY 226 B GLY 208 B LYS 230 B LYS 212 B ILE 208 B ILE 189 B TRP 215 B TRP 196 B PRO 198 B PRO 183 B CYS 201 B CYS 186 BINDING SITE FOR RESIDUE 0GJ A 1 A 0GJ 1 Software 9 BINDING SITE FOR RESIDUE 0GJ B 1 B 0GJ 1 Software 12 CATALYTIC SITE IN CHAIN A Author 3 CATALYTIC SITE IN CHAIN B Author 3 A HIS 57 A HIS 41 9 1_555 A ASP 189 A ASP 174 9 1_555 A THR 190 A THR 175 9 1_555 A PHE 193 A PHE 178 9 1_555 A SER 195 A SER 180 9 1_555 A SER 214 A SER 195 9 1_555 A GLY 216 A GLY 197 9 1_555 A GLY 217 A GLY 198 9 1_555 A CYS 220 A CYS 201 9 1_555 B HIS 57 B HIS 41 12 1_555 B ASP 189 B ASP 174 12 1_555 B THR 190 B THR 175 12 1_555 B PHE 193 B PHE 178 12 1_555 B ASP 194 B ASP 179 12 1_555 B SER 195 B SER 180 12 1_555 B SER 214 B SER 195 12 1_555 B GLY 216 B GLY 197 12 1_555 B GLY 217 B GLY 198 12 1_555 B CYS 220 B CYS 201 12 1_555 B HOH 482 F HOH 12 1_555 B HOH 634 F HOH 12 1_555 A HIS 57 A HIS 41 3 1_555 A ASP 102 A ASP 86 3 1_555 A SER 195 A SER 180 3 1_555 B HIS 57 B HIS 41 3 1_555 B ASP 102 B ASP 86 3 1_555 B SER 195 B SER 180 3 1_555 19 P 21 21 21