0.009597
0.005541
0.000000
0.000000
0.011082
0.000000
0.000000
0.000000
0.013423
0.00000
0.00000
0.00000
DISORDERED AREAS: RESIDUES 1 - 3, 64 - 67, AND C TERMINAL PORTION (RESIDUES 175 - 182) CANNOT BE SEEN IN THE MAP.
Zanotti, G.
Monaco, H.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.00
90.00
120.00
104.200
104.200
74.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
230
613
624
10.1006/jmbi.1993.1173
8464067
Crystal structure of the trigonal form of human plasma retinol-binding protein at 2.5 A resolution.
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
178
477
Crystallization of Human Plasma Apo-Retinol-Binding Protein
1984
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
163
679
Crystallization and Preliminary X-Ray Data of Human Plasma Retinol-Binding Protein
1983
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
20984.445
RETINOL BINDING PROTEIN
1
man
polymer
18.015
water
55
nat
water
no
no
ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDT
EDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELC
LARQYRLIVHNGYCDGRSERNL
ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDT
EDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELC
LARQYRLIVHNGYCDGRSERNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
3.71
66.83
pdbx_database_status
struct_conf
struct_conf_type
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1994-01-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
SHEET
THE SHEET PRESENTED AS *S1* ON SHEET RECORDS BELOW IS
ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS
REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST
AND LAST STRANDS ARE IDENTICAL.
Y
BNL
1992-07-27
REL
HOH
water
HOH
176
2
HOH
HOH
183
A
HOH
177
2
HOH
HOH
184
A
HOH
178
2
HOH
HOH
185
A
HOH
179
2
HOH
HOH
186
A
HOH
180
2
HOH
HOH
187
A
HOH
181
2
HOH
HOH
188
A
HOH
182
2
HOH
HOH
189
A
HOH
183
2
HOH
HOH
190
A
HOH
184
2
HOH
HOH
191
A
HOH
185
2
HOH
HOH
192
A
HOH
186
2
HOH
HOH
193
A
HOH
187
2
HOH
HOH
194
A
HOH
188
2
HOH
HOH
195
A
HOH
189
2
HOH
HOH
196
A
HOH
190
2
HOH
HOH
197
A
HOH
191
2
HOH
HOH
198
A
HOH
192
2
HOH
HOH
199
A
HOH
193
2
HOH
HOH
200
A
HOH
194
2
HOH
HOH
201
A
HOH
195
2
HOH
HOH
202
A
HOH
196
2
HOH
HOH
203
A
HOH
197
2
HOH
HOH
204
A
HOH
198
2
HOH
HOH
205
A
HOH
199
2
HOH
HOH
206
A
HOH
200
2
HOH
HOH
207
A
HOH
201
2
HOH
HOH
208
A
HOH
202
2
HOH
HOH
209
A
HOH
203
2
HOH
HOH
210
A
HOH
204
2
HOH
HOH
211
A
HOH
205
2
HOH
HOH
212
A
HOH
206
2
HOH
HOH
213
A
HOH
207
2
HOH
HOH
214
A
HOH
208
2
HOH
HOH
215
A
HOH
209
2
HOH
HOH
216
A
HOH
210
2
HOH
HOH
217
A
HOH
211
2
HOH
HOH
218
A
HOH
212
2
HOH
HOH
219
A
HOH
213
2
HOH
HOH
220
A
HOH
214
2
HOH
HOH
221
A
HOH
215
2
HOH
HOH
222
A
HOH
216
2
HOH
HOH
223
A
HOH
217
2
HOH
HOH
224
A
HOH
218
2
HOH
HOH
225
A
HOH
219
2
HOH
HOH
226
A
HOH
220
2
HOH
HOH
227
A
HOH
221
2
HOH
HOH
228
A
HOH
222
2
HOH
HOH
229
A
HOH
223
2
HOH
HOH
230
A
HOH
224
2
HOH
HOH
231
A
HOH
225
2
HOH
HOH
232
A
HOH
226
2
HOH
HOH
233
A
HOH
227
2
HOH
HOH
234
A
HOH
228
2
HOH
HOH
235
A
HOH
229
2
HOH
HOH
236
A
HOH
230
2
HOH
HOH
237
A
GLU
1
n
1
GLU
1
A
ARG
2
n
2
ARG
2
A
ASP
3
n
3
ASP
3
A
CYS
4
n
4
CYS
4
A
ARG
5
n
5
ARG
5
A
VAL
6
n
6
VAL
6
A
SER
7
n
7
SER
7
A
SER
8
n
8
SER
8
A
PHE
9
n
9
PHE
9
A
ARG
10
n
10
ARG
10
A
VAL
11
n
11
VAL
11
A
LYS
12
n
12
LYS
12
A
GLU
13
n
13
GLU
13
A
ASN
14
n
14
ASN
14
A
PHE
15
n
15
PHE
15
A
ASP
16
n
16
ASP
16
A
LYS
17
n
17
LYS
17
A
ALA
18
n
18
ALA
18
A
ARG
19
n
19
ARG
19
A
PHE
20
n
20
PHE
20
A
SER
21
n
21
SER
21
A
GLY
22
n
22
GLY
22
A
THR
23
n
23
THR
23
A
TRP
24
n
24
TRP
24
A
TYR
25
n
25
TYR
25
A
ALA
26
n
26
ALA
26
A
MET
27
n
27
MET
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
LYS
30
n
30
LYS
30
A
ASP
31
n
31
ASP
31
A
PRO
32
n
32
PRO
32
A
GLU
33
n
33
GLU
33
A
GLY
34
n
34
GLY
34
A
LEU
35
n
35
LEU
35
A
PHE
36
n
36
PHE
36
A
LEU
37
n
37
LEU
37
A
GLN
38
n
38
GLN
38
A
ASP
39
n
39
ASP
39
A
ASN
40
n
40
ASN
40
A
ILE
41
n
41
ILE
41
A
VAL
42
n
42
VAL
42
A
ALA
43
n
43
ALA
43
A
GLU
44
n
44
GLU
44
A
PHE
45
n
45
PHE
45
A
SER
46
n
46
SER
46
A
VAL
47
n
47
VAL
47
A
ASP
48
n
48
ASP
48
A
GLU
49
n
49
GLU
49
A
THR
50
n
50
THR
50
A
GLY
51
n
51
GLY
51
A
GLN
52
n
52
GLN
52
A
MET
53
n
53
MET
53
A
SER
54
n
54
SER
54
A
ALA
55
n
55
ALA
55
A
THR
56
n
56
THR
56
A
ALA
57
n
57
ALA
57
A
LYS
58
n
58
LYS
58
A
GLY
59
n
59
GLY
59
A
ARG
60
n
60
ARG
60
A
VAL
61
n
61
VAL
61
A
ARG
62
n
62
ARG
62
A
LEU
63
n
63
LEU
63
A
LEU
64
n
64
LEU
64
A
ASN
65
n
65
ASN
65
A
ASN
66
n
66
ASN
66
A
TRP
67
n
67
TRP
67
A
ASP
68
n
68
ASP
68
A
VAL
69
n
69
VAL
69
A
CYS
70
n
70
CYS
70
A
ALA
71
n
71
ALA
71
A
ASP
72
n
72
ASP
72
A
MET
73
n
73
MET
73
A
VAL
74
n
74
VAL
74
A
GLY
75
n
75
GLY
75
A
THR
76
n
76
THR
76
A
PHE
77
n
77
PHE
77
A
THR
78
n
78
THR
78
A
ASP
79
n
79
ASP
79
A
THR
80
n
80
THR
80
A
GLU
81
n
81
GLU
81
A
ASP
82
n
82
ASP
82
A
PRO
83
n
83
PRO
83
A
ALA
84
n
84
ALA
84
A
LYS
85
n
85
LYS
85
A
PHE
86
n
86
PHE
86
A
LYS
87
n
87
LYS
87
A
MET
88
n
88
MET
88
A
LYS
89
n
89
LYS
89
A
TYR
90
n
90
TYR
90
A
TRP
91
n
91
TRP
91
A
GLY
92
n
92
GLY
92
A
VAL
93
n
93
VAL
93
A
ALA
94
n
94
ALA
94
A
SER
95
n
95
SER
95
A
PHE
96
n
96
PHE
96
A
LEU
97
n
97
LEU
97
A
GLN
98
n
98
GLN
98
A
LYS
99
n
99
LYS
99
A
GLY
100
n
100
GLY
100
A
ASN
101
n
101
ASN
101
A
ASP
102
n
102
ASP
102
A
ASP
103
n
103
ASP
103
A
HIS
104
n
104
HIS
104
A
TRP
105
n
105
TRP
105
A
ILE
106
n
106
ILE
106
A
VAL
107
n
107
VAL
107
A
ASP
108
n
108
ASP
108
A
THR
109
n
109
THR
109
A
ASP
110
n
110
ASP
110
A
TYR
111
n
111
TYR
111
A
ASP
112
n
112
ASP
112
A
THR
113
n
113
THR
113
A
TYR
114
n
114
TYR
114
A
ALA
115
n
115
ALA
115
A
VAL
116
n
116
VAL
116
A
GLN
117
n
117
GLN
117
A
TYR
118
n
118
TYR
118
A
SER
119
n
119
SER
119
A
CYS
120
n
120
CYS
120
A
ARG
121
n
121
ARG
121
A
LEU
122
n
122
LEU
122
A
LEU
123
n
123
LEU
123
A
ASN
124
n
124
ASN
124
A
LEU
125
n
125
LEU
125
A
ASP
126
n
126
ASP
126
A
GLY
127
n
127
GLY
127
A
THR
128
n
128
THR
128
A
CYS
129
n
129
CYS
129
A
ALA
130
n
130
ALA
130
A
ASP
131
n
131
ASP
131
A
SER
132
n
132
SER
132
A
TYR
133
n
133
TYR
133
A
SER
134
n
134
SER
134
A
PHE
135
n
135
PHE
135
A
VAL
136
n
136
VAL
136
A
PHE
137
n
137
PHE
137
A
SER
138
n
138
SER
138
A
ARG
139
n
139
ARG
139
A
ASP
140
n
140
ASP
140
A
PRO
141
n
141
PRO
141
A
ASN
142
n
142
ASN
142
A
GLY
143
n
143
GLY
143
A
LEU
144
n
144
LEU
144
A
PRO
145
n
145
PRO
145
A
PRO
146
n
146
PRO
146
A
GLU
147
n
147
GLU
147
A
ALA
148
n
148
ALA
148
A
GLN
149
n
149
GLN
149
A
LYS
150
n
150
LYS
150
A
ILE
151
n
151
ILE
151
A
VAL
152
n
152
VAL
152
A
ARG
153
n
153
ARG
153
A
GLN
154
n
154
GLN
154
A
ARG
155
n
155
ARG
155
A
GLN
156
n
156
GLN
156
A
GLU
157
n
157
GLU
157
A
GLU
158
n
158
GLU
158
A
LEU
159
n
159
LEU
159
A
CYS
160
n
160
CYS
160
A
LEU
161
n
161
LEU
161
A
ALA
162
n
162
ALA
162
A
ARG
163
n
163
ARG
163
A
GLN
164
n
164
GLN
164
A
TYR
165
n
165
TYR
165
A
ARG
166
n
166
ARG
166
A
LEU
167
n
167
LEU
167
A
ILE
168
n
168
ILE
168
A
VAL
169
n
169
VAL
169
A
HIS
170
n
170
HIS
170
A
ASN
171
n
171
ASN
171
A
GLY
172
n
172
GLY
172
A
TYR
173
n
173
TYR
173
A
CYS
174
n
174
CYS
174
A
ASP
175
n
175
ASP
175
A
n
176
176
A
n
177
177
A
n
178
178
A
n
179
179
A
n
180
180
A
n
181
181
A
n
182
182
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
26
A
N
ALA
26
A
O
ILE
41
A
O
ILE
41
A
N
ASP
48
A
N
ASP
48
A
O
GLN
52
A
O
GLN
52
A
N
LEU
63
A
N
LEU
63
A
O
TRP
67
A
O
TRP
67
A
O
THR
78
A
O
THR
78
A
N
LYS
87
A
N
LYS
87
A
O
TYR
90
A
O
TYR
90
A
N
GLY
100
A
N
GLY
100
A
O
LEU
122
A
O
LEU
122
A
N
ALA
130
A
N
ALA
130
A
O
SER
138
A
O
SER
138
A
N
TYR
25
A
N
TYR
25
1
A
CA
ASP
175
A
CA
ASP
175
1
Y
1
A
C
ASP
175
A
C
ASP
175
1
Y
1
A
O
ASP
175
A
O
ASP
175
1
Y
1
A
CB
ASP
175
A
CB
ASP
175
1
Y
1
A
CG
ASP
175
A
CG
ASP
175
1
Y
1
A
OD1
ASP
175
A
OD1
ASP
175
1
Y
1
A
OD2
ASP
175
A
OD2
ASP
175
1
Y
1
A
GLY
176
A
GLY
176
1
Y
1
A
ARG
177
A
ARG
177
1
Y
1
A
SER
178
A
SER
178
1
Y
1
A
GLU
179
A
GLU
179
1
Y
1
A
ARG
180
A
ARG
180
1
Y
1
A
ASN
181
A
ASN
181
1
Y
1
A
LEU
182
A
LEU
182
1
Y
1
A
CA
ARG
155
PLANAR
1
-5.76
0.90
118.30
112.54
A
A
A
CB
CG
OD2
ASP
ASP
ASP
3
3
3
N
1
-5.01
0.50
120.30
115.29
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
5
5
5
N
1
3.21
0.50
120.30
123.51
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
5
5
5
N
1
-5.87
0.90
118.30
112.43
A
A
A
CB
CG
OD1
ASP
ASP
ASP
31
31
31
N
1
6.25
0.90
118.30
124.55
A
A
A
CB
CG
OD2
ASP
ASP
ASP
31
31
31
N
1
-5.51
0.90
118.30
112.79
A
A
A
CB
CG
OD1
ASP
ASP
ASP
48
48
48
N
1
5.53
0.90
118.30
123.83
A
A
A
CB
CG
OD2
ASP
ASP
ASP
48
48
48
N
1
-5.92
0.90
118.30
112.38
A
A
A
CB
CG
OD2
ASP
ASP
ASP
68
68
68
N
1
-6.05
0.90
118.30
112.25
A
A
A
CB
CG
OD2
ASP
ASP
ASP
72
72
72
N
1
-5.63
0.90
118.30
112.67
A
A
A
CB
CG
OD1
ASP
ASP
ASP
79
79
79
N
1
-5.57
0.90
118.30
112.73
A
A
A
CB
CG
OD1
ASP
ASP
ASP
103
103
103
N
1
6.39
0.90
118.30
124.69
A
A
A
CB
CG
OD1
ASP
ASP
ASP
126
126
126
N
1
-6.14
0.90
118.30
112.16
A
A
A
CB
CG
OD2
ASP
ASP
ASP
126
126
126
N
1
-6.24
0.90
118.30
112.06
A
A
A
CB
CG
OD1
ASP
ASP
ASP
131
131
131
N
1
6.06
0.90
118.30
124.36
A
A
A
CB
CG
OD2
ASP
ASP
ASP
131
131
131
N
1
11.06
1.40
123.60
134.66
A
A
A
CD
NE
CZ
ARG
ARG
ARG
139
139
139
N
1
3.07
0.50
120.30
123.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
139
139
139
N
1
-3.72
0.50
120.30
116.58
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
139
139
139
N
1
10.82
1.80
110.60
121.42
A
A
A
N
CA
CB
ARG
ARG
ARG
155
155
155
N
1
A
A
CD
OE2
GLU
GLU
81
81
0.077
0.011
1.252
1.329
N
1
A
A
CD
OE2
GLU
GLU
147
147
0.078
0.011
1.252
1.330
N
1
A
SER
7
-50.34
-5.17
1
A
SER
21
-36.54
155.31
1
A
LEU
37
68.52
92.41
1
A
THR
50
-176.75
-41.81
1
A
LYS
58
-170.23
133.96
1
A
LEU
63
-65.83
-175.70
1
A
ASN
66
83.42
104.77
1
A
TRP
67
176.48
99.44
1
A
ASP
79
-48.30
178.82
1
A
SER
95
-46.21
-15.46
1
A
ASP
108
-171.22
147.97
1
A
TYR
111
72.58
-33.87
1
A
THR
113
-129.74
-52.56
1
A
ASP
131
-170.51
97.42
1
A
PRO
141
-64.96
13.82
1
A
GLN
164
-143.13
-14.67
1
A
TYR
173
-48.15
-73.16
1
A
CYS
174
-42.03
96.76
0.19
0.19
2.5
9614
1
2.5
55
1463
0
0
1408
0.007
2.7
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
RETINOL BINDING PROTEIN (APO FORM)
CRYSTAL STRUCTURE OF THE TRIGONAL FORM OF HUMAN PLASMA RETINOL-BINDING PROTEIN AT 2.5 ANGSTROMS RESOLUTION
1
N
N
2
N
N
A
VAL
6
A
VAL
6
HELX_P
ONE SHORT TURN
A
SER
8
A
SER
8
4
1
3
A
PRO
146
A
PRO
146
HELX_P
A
GLU
158
A
GLU
158
1
2
13
disulf
2.027
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
160
A
SG
CYS
160
1_555
disulf
2.038
A
CYS
70
A
SG
CYS
70
1_555
A
CYS
174
A
SG
CYS
174
1_555
disulf
1.978
A
CYS
120
A
SG
CYS
120
1_555
A
CYS
129
A
SG
CYS
129
1_555
RETINOL TRANSPORT
RETINOL TRANSPORT
RETBP_HUMAN
UNP
1
1
P02753
MKWVWALLLLAAWAAAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLL
NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGL
PPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSERNLL
17
198
1BRQ
1
182
P02753
A
1
1
182
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
22
A
GLY
22
A
LYS
30
A
LYS
30
A
ASP
39
A
ASP
39
A
ASP
48
A
ASP
48
A
GLN
52
A
GLN
52
A
LEU
63
A
LEU
63
A
TRP
67
A
TRP
67
A
THR
78
A
THR
78
A
LYS
85
A
LYS
85
A
GLY
92
A
GLY
92
A
LYS
99
A
LYS
99
A
THR
109
A
THR
109
A
TYR
114
A
TYR
114
A
ASN
124
A
ASN
124
A
CYS
129
A
CYS
129
A
ARG
139
A
ARG
139
A
GLY
22
A
GLY
22
A
LYS
30
A
LYS
30
146
H 3