0.010084
0.005822
0.000000
0.000000
0.011644
0.000000
0.000000
0.000000
0.009029
0.00000
0.00000
0.00000
Hao, B.
Gong, W.
Rajagopalan, P.T.
Hu, Y.
Pei, D.
Chan, M.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
99.170
99.170
110.755
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C18 H28 N3 O8 P
445.404
(S)-2-(PHOSPHONOXY)CAPROYL-L-LEUCYL-P-NITROANILIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
O
N
251
N
P
N
252
N
O
N
253
N
O
N
254
N
O
N
255
S
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
N
N
270
N
O
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
N
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
P
N
332
N
O
N
333
N
O
N
334
N
O
N
335
N
O
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
R
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
Y
282
N
doub
Y
283
N
sing
Y
284
N
sing
N
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
sing
N
289
N
sing
Y
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
38
4712
4719
10.1021/bi982594c
10200158
Structural basis for the design of antibiotics targeting peptide deformylase.
1999
US
Biochemistry
BICHAW
0033
0006-2960
36
13904
13909
Crystal Structure of the Escherichia Coli Peptide Deformylase
1997
10.2210/pdb1bsk/pdb
pdb_00001bsk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
283
1
IMAGE PLATE
1998-05-15
RIGAKU RAXIS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
19226.248
PROTEIN (PEPTIDE DEFORMYLASE)
3.5.1.27
1
nat
polymer
65.409
ZINC ION
1
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
445.404
(S)-2-(PHOSPHONOXY)CAPROYL-L-LEUCYL-P-NITROANILIDE
1
syn
non-polymer
18.015
water
13
nat
water
EC 3.5.1.27
no
no
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEK
SGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK
LDRLKARA
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEK
SGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK
LDRLKARA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
BL21(DE3)
562
Escherichia coli
1
4.1
65
7.5
pH 7.5
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2000-04-15
1
1
2007-10-16
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-08-09
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
RCSB
1998-08-28
REL
ZN
ZINC ION
PO4
PHOSPHATE ION
MLN
(S)-2-(PHOSPHONOXY)CAPROYL-L-LEUCYL-P-NITROANILIDE
HOH
water
1DFF
PDB ENTRY 1DFF
PDB
experimental model
ZN
1
2
ZN
ZN
169
A
PO4
1
3
PO4
PO4
170
A
MLN
1
4
MLN
MLN
171
A
HOH
1
5
HOH
HOH
172
A
HOH
2
5
HOH
HOH
173
A
HOH
3
5
HOH
HOH
174
A
HOH
4
5
HOH
HOH
175
A
HOH
5
5
HOH
HOH
176
A
HOH
6
5
HOH
HOH
177
A
HOH
7
5
HOH
HOH
178
A
HOH
8
5
HOH
HOH
179
A
HOH
9
5
HOH
HOH
180
A
HOH
10
5
HOH
HOH
181
A
HOH
11
5
HOH
HOH
182
A
HOH
12
5
HOH
HOH
183
A
HOH
13
5
HOH
HOH
184
A
SER
1
n
1
SER
1
A
VAL
2
n
2
VAL
2
A
LEU
3
n
3
LEU
3
A
GLN
4
n
4
GLN
4
A
VAL
5
n
5
VAL
5
A
LEU
6
n
6
LEU
6
A
HIS
7
n
7
HIS
7
A
ILE
8
n
8
ILE
8
A
PRO
9
n
9
PRO
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LYS
15
n
15
LYS
15
A
VAL
16
n
16
VAL
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
PRO
19
n
19
PRO
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
GLU
22
n
22
GLU
22
A
VAL
23
n
23
VAL
23
A
ASN
24
n
24
ASN
24
A
ALA
25
n
25
ALA
25
A
GLU
26
n
26
GLU
26
A
ILE
27
n
27
ILE
27
A
GLN
28
n
28
GLN
28
A
ARG
29
n
29
ARG
29
A
ILE
30
n
30
ILE
30
A
VAL
31
n
31
VAL
31
A
ASP
32
n
32
ASP
32
A
ASP
33
n
33
ASP
33
A
MET
34
n
34
MET
34
A
PHE
35
n
35
PHE
35
A
GLU
36
n
36
GLU
36
A
THR
37
n
37
THR
37
A
MET
38
n
38
MET
38
A
TYR
39
n
39
TYR
39
A
ALA
40
n
40
ALA
40
A
GLU
41
n
41
GLU
41
A
GLU
42
n
42
GLU
42
A
GLY
43
n
43
GLY
43
A
ILE
44
n
44
ILE
44
A
GLY
45
n
45
GLY
45
A
LEU
46
n
46
LEU
46
A
ALA
47
n
47
ALA
47
A
ALA
48
n
48
ALA
48
A
THR
49
n
49
THR
49
A
GLN
50
n
50
GLN
50
A
VAL
51
n
51
VAL
51
A
ASP
52
n
52
ASP
52
A
ILE
53
n
53
ILE
53
A
HIS
54
n
54
HIS
54
A
GLN
55
n
55
GLN
55
A
ARG
56
n
56
ARG
56
A
ILE
57
n
57
ILE
57
A
ILE
58
n
58
ILE
58
A
VAL
59
n
59
VAL
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
VAL
62
n
62
VAL
62
A
SER
63
n
63
SER
63
A
GLU
64
n
64
GLU
64
A
ASN
65
n
65
ASN
65
A
ARG
66
n
66
ARG
66
A
ASP
67
n
67
ASP
67
A
GLU
68
n
68
GLU
68
A
ARG
69
n
69
ARG
69
A
LEU
70
n
70
LEU
70
A
VAL
71
n
71
VAL
71
A
LEU
72
n
72
LEU
72
A
ILE
73
n
73
ILE
73
A
ASN
74
n
74
ASN
74
A
PRO
75
n
75
PRO
75
A
GLU
76
n
76
GLU
76
A
LEU
77
n
77
LEU
77
A
LEU
78
n
78
LEU
78
A
GLU
79
n
79
GLU
79
A
LYS
80
n
80
LYS
80
A
SER
81
n
81
SER
81
A
GLY
82
n
82
GLY
82
A
GLU
83
n
83
GLU
83
A
THR
84
n
84
THR
84
A
GLY
85
n
85
GLY
85
A
ILE
86
n
86
ILE
86
A
GLU
87
n
87
GLU
87
A
GLU
88
n
88
GLU
88
A
GLY
89
n
89
GLY
89
A
CYS
90
n
90
CYS
90
A
LEU
91
n
91
LEU
91
A
SER
92
n
92
SER
92
A
ILE
93
n
93
ILE
93
A
PRO
94
n
94
PRO
94
A
GLU
95
n
95
GLU
95
A
GLN
96
n
96
GLN
96
A
ARG
97
n
97
ARG
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
VAL
100
n
100
VAL
100
A
PRO
101
n
101
PRO
101
A
ARG
102
n
102
ARG
102
A
ALA
103
n
103
ALA
103
A
GLU
104
n
104
GLU
104
A
LYS
105
n
105
LYS
105
A
VAL
106
n
106
VAL
106
A
LYS
107
n
107
LYS
107
A
ILE
108
n
108
ILE
108
A
ARG
109
n
109
ARG
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
ASP
112
n
112
ASP
112
A
ARG
113
n
113
ARG
113
A
ASP
114
n
114
ASP
114
A
GLY
115
n
115
GLY
115
A
LYS
116
n
116
LYS
116
A
PRO
117
n
117
PRO
117
A
PHE
118
n
118
PHE
118
A
GLU
119
n
119
GLU
119
A
LEU
120
n
120
LEU
120
A
GLU
121
n
121
GLU
121
A
ALA
122
n
122
ALA
122
A
ASP
123
n
123
ASP
123
A
GLY
124
n
124
GLY
124
A
LEU
125
n
125
LEU
125
A
LEU
126
n
126
LEU
126
A
ALA
127
n
127
ALA
127
A
ILE
128
n
128
ILE
128
A
CYS
129
n
129
CYS
129
A
ILE
130
n
130
ILE
130
A
GLN
131
n
131
GLN
131
A
HIS
132
n
132
HIS
132
A
GLU
133
n
133
GLU
133
A
MET
134
n
134
MET
134
A
ASP
135
n
135
ASP
135
A
HIS
136
n
136
HIS
136
A
LEU
137
n
137
LEU
137
A
VAL
138
n
138
VAL
138
A
GLY
139
n
139
GLY
139
A
LYS
140
n
140
LYS
140
A
LEU
141
n
141
LEU
141
A
PHE
142
n
142
PHE
142
A
MET
143
n
143
MET
143
A
ASP
144
n
144
ASP
144
A
TYR
145
n
145
TYR
145
A
LEU
146
n
146
LEU
146
A
SER
147
n
147
SER
147
A
PRO
148
n
148
PRO
148
A
LEU
149
n
149
LEU
149
A
LYS
150
n
150
LYS
150
A
GLN
151
n
151
GLN
151
A
GLN
152
n
152
GLN
152
A
ARG
153
n
153
ARG
153
A
ILE
154
n
154
ILE
154
A
ARG
155
n
155
ARG
155
A
GLN
156
n
156
GLN
156
A
LYS
157
n
157
LYS
157
A
VAL
158
n
158
VAL
158
A
GLU
159
n
159
GLU
159
A
LYS
160
n
160
LYS
160
A
LEU
161
n
161
LEU
161
A
ASP
162
n
162
ASP
162
A
ARG
163
n
163
ARG
163
A
LEU
164
n
164
LEU
164
A
LYS
165
n
165
LYS
165
A
ALA
166
n
166
ALA
166
A
n
167
167
A
n
168
168
A
author_defined_assembly
1
monomeric
A
CYS
90
A
SG
CYS
90
1_555
A
ZN
169
B
ZN
ZN
1_555
A
HIS
132
A
NE2
HIS
132
1_555
121.8
A
CYS
90
A
SG
CYS
90
1_555
A
ZN
169
B
ZN
ZN
1_555
A
HIS
136
A
NE2
HIS
136
1_555
98.7
A
HIS
132
A
NE2
HIS
132
1_555
A
ZN
169
B
ZN
ZN
1_555
A
HIS
136
A
NE2
HIS
136
1_555
106.3
A
CYS
90
A
SG
CYS
90
1_555
A
ZN
169
B
ZN
ZN
1_555
A
MLN
171
D
O3
MLN
1_555
124.8
A
HIS
132
A
NE2
HIS
132
1_555
A
ZN
169
B
ZN
ZN
1_555
A
MLN
171
D
O3
MLN
1_555
102.4
A
HIS
136
A
NE2
HIS
136
1_555
A
ZN
169
B
ZN
ZN
1_555
A
MLN
171
D
O3
MLN
1_555
98.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
46
A
O
LEU
46
A
N
VAL
59
A
N
VAL
59
A
O
ILE
58
A
O
ILE
58
A
N
LEU
72
A
N
LEU
72
A
O
THR
84
A
O
THR
84
A
N
ARG
102
A
N
ARG
102
A
O
PHE
118
A
O
PHE
118
A
N
ALA
110
A
N
ALA
110
A
O
LYS
105
A
O
LYS
105
A
N
SER
81
A
N
SER
81
1
A
O1
MLN
171
D
O1
MLN
1
1
N
1
A
ARG
167
A
ARG
167
1
Y
1
A
ALA
168
A
ALA
168
1
Y
1
A
ASN
24
-142.02
-158.19
1
A
ASP
67
-140.43
20.44
1
A
LYS
165
-87.16
41.12
PARHCSDX.PRO
PARAM19.SOL
0.2210000
0.1670000
0.1670000
3.0
20.0
450
5879
7.3
88.7
RANDOM
1000000
0.0
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1DFF
3.0
20.0
13
1377
35
0
1329
0.015
1.739
0.2850000
0.2330000
3.14
41
533
10
6.3
76.4
3.0
20.0
1BSK
6118
0.0
0.1000000
10.0000000
1
3.2
88.7
0.2810000
3.0
3.1
76.4
model building
X-PLOR
refinement
X-PLOR
3.851
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
ZINC DEFORMYLASE INHIBITOR COMPLEX FROM E.COLI
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
GLU
11
A
GLU
11
HELX_P
A
ARG
14
A
ARG
14
5
1
4
A
ALA
25
A
ALA
25
HELX_P
A
ALA
40
A
ALA
40
1
2
16
A
ALA
48
A
ALA
48
HELX_P
A
VAL
51
A
VAL
51
5
3
4
A
GLY
124
A
GLY
124
HELX_P
A
VAL
138
A
VAL
138
1
4
15
A
PHE
142
A
PHE
142
HELX_P
A
TYR
145
A
TYR
145
5
5
4
A
PRO
148
A
PRO
148
HELX_P
A
LEU
164
A
LEU
164
1
6
17
metalc
2.289
A
CYS
90
A
SG
CYS
90
1_555
A
ZN
169
B
ZN
ZN
1_555
metalc
2.062
A
HIS
132
A
NE2
HIS
132
1_555
A
ZN
169
B
ZN
ZN
1_555
metalc
2.077
A
HIS
136
A
NE2
HIS
136
1_555
A
ZN
169
B
ZN
ZN
1_555
metalc
2.038
A
ZN
169
B
ZN
ZN
1_555
A
MLN
171
D
O3
MLN
1_555
HYDROLASE
DEFORMYLASE, INHIBITOR, METALLOPROTEINASE, HYDROLASE
A
ILE
8
A
ILE
8
1
A
PRO
9
A
PRO
9
1.30
DEF_ECOLI
UNP
1
P0A6K3
2
169
1BSK
1
168
P0A6K3
A
1
1
168
3
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
45
A
GLY
45
A
ALA
47
A
ALA
47
A
ILE
57
A
ILE
57
A
ILE
60
A
ILE
60
A
LEU
70
A
LEU
70
A
ILE
73
A
ILE
73
A
THR
84
A
THR
84
A
GLU
88
A
GLU
88
A
ALA
98
A
ALA
98
A
ARG
102
A
ARG
102
A
PRO
117
A
PRO
117
A
ALA
122
A
ALA
122
A
LYS
105
A
LYS
105
A
LEU
111
A
LEU
111
A
GLU
76
A
GLU
76
A
SER
81
A
SER
81
BINDING SITE FOR RESIDUE ZN A 169
A
ZN
169
Software
5
BINDING SITE FOR RESIDUE PO4 A 170
A
PO4
170
Software
7
BINDING SITE FOR RESIDUE MLN A 171
A
MLN
171
Software
17
A
GLN
50
A
GLN
50
5
1_555
A
CYS
90
A
CYS
90
5
1_555
A
HIS
132
A
HIS
132
5
1_555
A
HIS
136
A
HIS
136
5
1_555
A
MLN
171
D
MLN
5
1_555
A
PRO
9
A
PRO
9
7
1_555
A
ASP
10
A
ASP
10
7
1_555
A
ARG
14
A
ARG
14
7
1_555
A
GLN
152
A
GLN
152
7
10_666
A
ARG
155
A
ARG
155
7
10_666
A
GLN
156
A
GLN
156
7
10_666
A
GLU
159
A
GLU
159
7
10_666
A
GLU
42
A
GLU
42
17
1_555
A
GLY
43
A
GLY
43
17
1_555
A
ILE
44
A
ILE
44
17
1_555
A
GLY
45
A
GLY
45
17
1_555
A
GLN
50
A
GLN
50
17
1_555
A
ILE
86
A
ILE
86
17
1_555
A
ILE
86
A
ILE
86
17
11_656
A
GLU
88
A
GLU
88
17
1_555
A
GLY
89
A
GLY
89
17
1_555
A
LEU
91
A
LEU
91
17
1_555
A
GLY
124
A
GLY
124
17
11_656
A
LEU
125
A
LEU
125
17
11_656
A
ILE
128
A
ILE
128
17
11_656
A
HIS
132
A
HIS
132
17
1_555
A
GLU
133
A
GLU
133
17
1_555
A
HIS
136
A
HIS
136
17
1_555
A
ZN
169
B
ZN
17
1_555
179
P 65 2 2