1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lam, S.L.
Au-Yeung, S.C.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
266
745
760
10.1006/jmbi.1996.0783
9102467
Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids.
1997
10.2210/pdb1buf/pdb
pdb_00001buf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1808.229
DNA (5'-D(*CP*AP*AP*TP*TP*G)-3')
2
syn
polymer
no
no
(DC)(DA)(DA)(DT)(DT)(DG)
CAATTG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
22.437
1
19
A
1
B
12
0.212
A_DC1:DG12_B
1
-20.156
0.312
-0.498
-0.141
13.006
1
20
A
2
B
11
-2.989
A_DA2:DT11_B
2
-8.370
0.106
-0.297
-0.142
4.407
1
20
A
3
B
10
2.676
A_DA3:DT10_B
3
-26.053
-0.482
-0.338
-0.308
-4.466
1
20
A
4
B
9
2.673
A_DT4:DA9_B
4
-26.011
0.482
-0.337
-0.308
-13.043
1
20
A
5
B
8
-3.022
A_DT5:DA8_B
5
-8.341
-0.104
-0.297
-0.143
-22.669
1
19
A
6
B
7
0.297
A_DG6:DC7_B
6
-20.334
-0.318
-0.508
-0.141
3.363
49.275
A
A
1
2
18.617
B
B
12
11
3.539
15.171
-0.213
0.381
AA_DC1DA2:DT11DG12_BB
1
11.254
-13.811
45.721
-0.791
1.182
3.274
36.241
A
A
2
3
27.830
B
B
11
10
3.331
16.647
-0.272
0.651
AA_DA2DA3:DT10DT11_BB
2
-4.800
8.025
31.954
-1.474
-0.289
3.316
34.217
A
A
3
4
0.767
B
B
10
9
3.323
0.451
-0.001
-0.540
AA_DA3DT4:DA9DT10_BB
3
-0.013
0.022
34.214
-0.990
-0.001
3.273
36.259
A
A
4
5
27.852
B
B
9
8
3.330
16.667
0.272
0.650
AA_DT4DT5:DA8DA9_BB
4
4.796
-8.014
31.966
-1.475
0.287
3.368
49.258
A
A
5
6
18.760
B
B
8
7
3.545
15.279
0.219
0.385
AA_DT5DG6:DC7DA8_BB
5
-11.210
13.764
45.678
-0.799
-1.187
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Data collection
1
0
1997-01-27
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
MINIMIZED AVERAGE STRUCTURE
MINIMIZED AVERAGE STRUCTURE
MINIMIZED AVERAGE STRUCTURE
MINIMIZED AVERAGE STRUCTURE
MINIMIZED AVERAGE STRUCTURE
MINIMIZED AVERAGE STRUCTURE
MINIMIZED AVERAGE STRUCTURE
Y
BNL
1996-06-24
REL
REL
IN 10 MM SODIUM PHOSPHATE BUFFER AT 10 DEGREES CELSIUS 6.1 MM DOUBLE STRANDED CONCENTRATION
1
283
K
PEARLMAN,CASE,CALDWELL,SEIBEL,SINGH,WEINER, KOLLMAN
refinement
Amber
4.0
C
1
n
1
DC
1
A
A
2
n
2
DA
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
T
5
n
5
DT
5
A
G
6
n
6
DG
6
A
C
7
n
1
DC
7
B
A
8
n
2
DA
8
B
A
9
n
3
DA
9
B
T
10
n
4
DT
10
B
T
11
n
5
DT
11
B
G
12
n
6
DG
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DA
2
0.082
SIDE CHAIN
1
A
DG
6
0.102
SIDE CHAIN
1
B
DA
8
0.081
SIDE CHAIN
1
B
DG
12
0.102
SIDE CHAIN
1
4.19
0.60
106.00
110.19
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
1
2.82
0.30
108.30
111.12
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
4.99
0.60
106.00
110.99
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
1
8.90
1.10
109.80
118.70
A
A
A
C5'
C4'
O4'
DT
DT
DT
4
4
4
N
1
4.77
0.30
108.30
113.07
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
4.80
0.50
106.80
111.60
A
A
A
O4'
C1'
C2'
DT
DT
DT
5
5
5
N
1
9.85
1.40
114.30
124.15
A
A
A
N1
C1'
C2'
DT
DT
DT
5
5
5
N
1
12.00
0.30
108.30
120.30
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
-3.99
0.60
122.90
118.91
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
1
3.53
0.50
106.80
110.33
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
1
4.19
0.30
108.30
112.49
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
4.31
0.60
106.00
110.31
B
B
B
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
1
2.63
0.30
108.30
110.93
B
B
B
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
5.02
0.60
106.00
111.02
B
B
B
O4'
C4'
C3'
DT
DT
DT
10
10
10
N
1
8.92
1.10
109.80
118.72
B
B
B
C5'
C4'
O4'
DT
DT
DT
10
10
10
N
1
4.71
0.30
108.30
113.01
B
B
B
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
4.74
0.50
106.80
111.54
B
B
B
O4'
C1'
C2'
DT
DT
DT
11
11
11
N
1
9.82
1.40
114.30
124.12
B
B
B
N1
C1'
C2'
DT
DT
DT
11
11
11
N
1
12.08
0.30
108.30
120.38
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
1
-3.95
0.60
122.90
118.95
B
B
B
C6
C5
C7
DT
DT
DT
11
11
11
N
1
3.54
0.50
106.80
110.34
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
1
4.19
0.30
108.30
112.49
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
refinement
AMBER
SELF-COMPLEMENTARY DNA 5'-D(CAATTG)2, NMR, MINIMIZED AVERAGE STRUCTURE
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
DT
11
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
DT
11
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
10
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
10
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
9
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
9
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
B
DA
8
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
B
DA
8
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
DEOXYRIBONUCLEIC ACID, DNA
1BUF
PDB
1
1BUF
1
6
1BUF
1
6
1BUF
A
1
1
6
7
12
1BUF
7
12
1BUF
B
1
1
6
1
P 1