1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lam, S.L. Au-Yeung, S.C.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 266 745 760 10.1006/jmbi.1996.0783 9102467 Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids. 1997 10.2210/pdb1buf/pdb pdb_00001buf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1808.229 DNA (5'-D(*CP*AP*AP*TP*TP*G)-3') 2 syn polymer no no (DC)(DA)(DA)(DT)(DT)(DG) CAATTG A,B polydeoxyribonucleotide n n n n n n 22.437 1 19 A 1 B 12 0.212 A_DC1:DG12_B 1 -20.156 0.312 -0.498 -0.141 13.006 1 20 A 2 B 11 -2.989 A_DA2:DT11_B 2 -8.370 0.106 -0.297 -0.142 4.407 1 20 A 3 B 10 2.676 A_DA3:DT10_B 3 -26.053 -0.482 -0.338 -0.308 -4.466 1 20 A 4 B 9 2.673 A_DT4:DA9_B 4 -26.011 0.482 -0.337 -0.308 -13.043 1 20 A 5 B 8 -3.022 A_DT5:DA8_B 5 -8.341 -0.104 -0.297 -0.143 -22.669 1 19 A 6 B 7 0.297 A_DG6:DC7_B 6 -20.334 -0.318 -0.508 -0.141 3.363 49.275 A A 1 2 18.617 B B 12 11 3.539 15.171 -0.213 0.381 AA_DC1DA2:DT11DG12_BB 1 11.254 -13.811 45.721 -0.791 1.182 3.274 36.241 A A 2 3 27.830 B B 11 10 3.331 16.647 -0.272 0.651 AA_DA2DA3:DT10DT11_BB 2 -4.800 8.025 31.954 -1.474 -0.289 3.316 34.217 A A 3 4 0.767 B B 10 9 3.323 0.451 -0.001 -0.540 AA_DA3DT4:DA9DT10_BB 3 -0.013 0.022 34.214 -0.990 -0.001 3.273 36.259 A A 4 5 27.852 B B 9 8 3.330 16.667 0.272 0.650 AA_DT4DT5:DA8DA9_BB 4 4.796 -8.014 31.966 -1.475 0.287 3.368 49.258 A A 5 6 18.760 B B 8 7 3.545 15.279 0.219 0.385 AA_DT5DG6:DC7DA8_BB 5 -11.210 13.764 45.678 -0.799 -1.187 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Data collection 1 0 1997-01-27 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name MINIMIZED AVERAGE STRUCTURE MINIMIZED AVERAGE STRUCTURE MINIMIZED AVERAGE STRUCTURE MINIMIZED AVERAGE STRUCTURE MINIMIZED AVERAGE STRUCTURE MINIMIZED AVERAGE STRUCTURE MINIMIZED AVERAGE STRUCTURE Y BNL 1996-06-24 REL REL IN 10 MM SODIUM PHOSPHATE BUFFER AT 10 DEGREES CELSIUS 6.1 MM DOUBLE STRANDED CONCENTRATION 1 283 K PEARLMAN,CASE,CALDWELL,SEIBEL,SINGH,WEINER, KOLLMAN refinement Amber 4.0 C 1 n 1 DC 1 A A 2 n 2 DA 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A T 5 n 5 DT 5 A G 6 n 6 DG 6 A C 7 n 1 DC 7 B A 8 n 2 DA 8 B A 9 n 3 DA 9 B T 10 n 4 DT 10 B T 11 n 5 DT 11 B G 12 n 6 DG 12 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DA 2 0.082 SIDE CHAIN 1 A DG 6 0.102 SIDE CHAIN 1 B DA 8 0.081 SIDE CHAIN 1 B DG 12 0.102 SIDE CHAIN 1 4.19 0.60 106.00 110.19 A A A O4' C4' C3' DC DC DC 1 1 1 N 1 2.82 0.30 108.30 111.12 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 4.99 0.60 106.00 110.99 A A A O4' C4' C3' DT DT DT 4 4 4 N 1 8.90 1.10 109.80 118.70 A A A C5' C4' O4' DT DT DT 4 4 4 N 1 4.77 0.30 108.30 113.07 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 4.80 0.50 106.80 111.60 A A A O4' C1' C2' DT DT DT 5 5 5 N 1 9.85 1.40 114.30 124.15 A A A N1 C1' C2' DT DT DT 5 5 5 N 1 12.00 0.30 108.30 120.30 A A A O4' C1' N1 DT DT DT 5 5 5 N 1 -3.99 0.60 122.90 118.91 A A A C6 C5 C7 DT DT DT 5 5 5 N 1 3.53 0.50 106.80 110.33 A A A O4' C1' C2' DG DG DG 6 6 6 N 1 4.19 0.30 108.30 112.49 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 4.31 0.60 106.00 110.31 B B B O4' C4' C3' DC DC DC 7 7 7 N 1 2.63 0.30 108.30 110.93 B B B O4' C1' N1 DC DC DC 7 7 7 N 1 5.02 0.60 106.00 111.02 B B B O4' C4' C3' DT DT DT 10 10 10 N 1 8.92 1.10 109.80 118.72 B B B C5' C4' O4' DT DT DT 10 10 10 N 1 4.71 0.30 108.30 113.01 B B B O4' C1' N1 DT DT DT 10 10 10 N 1 4.74 0.50 106.80 111.54 B B B O4' C1' C2' DT DT DT 11 11 11 N 1 9.82 1.40 114.30 124.12 B B B N1 C1' C2' DT DT DT 11 11 11 N 1 12.08 0.30 108.30 120.38 B B B O4' C1' N1 DT DT DT 11 11 11 N 1 -3.95 0.60 122.90 118.95 B B B C6 C5 C7 DT DT DT 11 11 11 N 1 3.54 0.50 106.80 110.34 B B B O4' C1' C2' DG DG DG 12 12 12 N 1 4.19 0.30 108.30 112.49 B B B O4' C1' N9 DG DG DG 12 12 12 N refinement AMBER SELF-COMPLEMENTARY DNA 5'-D(CAATTG)2, NMR, MINIMIZED AVERAGE STRUCTURE 1 N N 1 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 12 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 12 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 12 B N2 DG 6 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 11 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 11 B O4 DT 5 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 10 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 10 B O4 DT 4 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 9 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 9 B N6 DA 3 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 5 1_555 B DA 8 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 5 1_555 B DA 8 B N6 DA 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 7 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 7 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 7 B N4 DC 1 1_555 DNA DEOXYRIBONUCLEIC ACID, DNA 1BUF PDB 1 1BUF 1 6 1BUF 1 6 1BUF A 1 1 6 7 12 1BUF 7 12 1BUF B 1 1 6 1 P 1