1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Dornberger, U. Flemming, J. Fritzsche, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 284 1453 1463 10.1006/jmbi.1998.2261 9878363 Structure determination and analysis of helix parameters in the DNA decamer d(CATGGCCATG)2 comparison of results from NMR and crystallography. 1998 10.2210/pdb1but/pdb pdb_00001but 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 IN 100 MM NACL AND 0.2 MM EDTA, PH 7.0 AT 300 K, 2 MM DUPLEX CONCENTRATION 3045.004 DNA (5'-D(CATGGCCATG)-3')2 2 syn polymer no no (DC)(DA)(DT)(DG)(DG)(DC)(DC)(DA)(DT)(DG) CATGGCCATG A,B polydeoxyribonucleotide n n n n n n n n n n 4.462 1 20 A 2 B 19 -3.591 A_DA2:DT19_B 1 -16.470 -0.254 0.114 -0.211 -3.934 1 20 A 3 B 18 -5.684 A_DT3:DA18_B 2 -20.787 0.054 0.201 -0.195 0.726 1 19 A 4 B 17 -4.189 A_DG4:DC17_B 3 -9.407 -0.086 0.369 -0.207 1.565 1 19 A 5 B 16 -3.691 A_DG5:DC16_B 4 -5.960 -0.176 0.565 -0.243 0.917 1 19 A 6 B 15 -3.592 A_DC6:DG15_B 5 -7.342 0.109 0.532 -0.222 1.315 1 19 A 7 B 14 -3.754 A_DC7:DG14_B 6 -11.847 -0.019 0.334 -0.185 5.282 1 20 A 8 B 13 -5.895 A_DA8:DT13_B 7 -19.661 -0.057 0.217 -0.193 -3.480 1 20 A 9 B 12 -4.285 A_DT9:DA12_B 8 -17.255 0.262 0.097 -0.219 3.317 34.785 A A 2 3 -3.822 B B 19 18 3.303 -2.283 -0.376 -0.116 AA_DA2DT3:DA18DT19_BB 1 -1.567 2.624 34.678 0.159 0.387 2.810 35.103 A A 3 4 22.031 B B 18 17 2.979 12.990 0.253 0.097 AA_DT3DG4:DC17DA18_BB 2 -0.618 1.048 32.676 -1.627 -0.504 2.946 36.304 A A 4 5 14.889 B B 17 16 3.123 9.158 -0.146 -0.308 AA_DG4DG5:DC16DC17_BB 3 -4.692 7.628 34.862 -1.708 -0.387 3.224 37.369 A A 5 6 2.246 B B 16 15 3.239 1.439 0.022 -0.352 AA_DG5DC6:DG15DC16_BB 4 0.344 -0.536 37.341 -0.738 0.011 2.940 36.149 A A 6 7 13.682 B B 15 14 3.103 8.392 0.185 -0.355 AA_DC6DC7:DG14DG15_BB 5 4.926 -8.032 34.857 -1.686 0.357 2.884 35.043 A A 7 8 18.301 B B 14 13 2.996 10.849 -0.349 0.093 AA_DC7DA8:DT13DG14_BB 6 0.131 -0.220 33.371 -1.349 0.597 3.335 35.219 A A 8 9 -4.691 B B 13 12 3.320 -2.834 0.360 -0.145 AA_DA8DT9:DA12DT13_BB 7 1.793 -2.968 35.064 0.191 -0.324 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Data collection 1 0 1999-05-18 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1998-09-04 REL REL LEAST RESTRAINT VIOLATIONS 250 10 NOESY COSY H-P HETCOR 100 mM NACL 7.0 300 K REDAC STRATEGY USED distance geometry 100% D2O GUNTERT,WUTHRICH refinement DIANA structure solution DIANA 500 Varian INOVA 500 600 Varian 600 C 1 n 1 DC 1 A A 2 n 2 DA 2 A T 3 n 3 DT 3 A G 4 n 4 DG 4 A G 5 n 5 DG 5 A C 6 n 6 DC 6 A C 7 n 7 DC 7 A A 8 n 8 DA 8 A T 9 n 9 DT 9 A G 10 n 10 DG 10 A C 11 n 1 DC 11 B A 12 n 2 DA 12 B T 13 n 3 DT 13 B G 14 n 4 DG 14 B G 15 n 5 DG 15 B C 16 n 6 DC 16 B C 17 n 7 DC 17 B A 18 n 8 DA 18 B T 19 n 9 DT 19 B G 20 n 10 DG 20 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DA 2 0.108 SIDE CHAIN 1 A DT 3 0.079 SIDE CHAIN 1 A DC 7 0.060 SIDE CHAIN 1 A DA 8 0.054 SIDE CHAIN 1 B DA 12 0.098 SIDE CHAIN 1 B DT 13 0.077 SIDE CHAIN 1 B DC 17 0.063 SIDE CHAIN 1 B DA 18 0.050 SIDE CHAIN 1 B DG 20 0.058 SIDE CHAIN 2 A DA 2 0.088 SIDE CHAIN 2 A DT 3 0.083 SIDE CHAIN 2 A DC 7 0.065 SIDE CHAIN 2 A DG 10 0.061 SIDE CHAIN 2 B DA 12 0.086 SIDE CHAIN 2 B DT 13 0.075 SIDE CHAIN 2 B DC 17 0.066 SIDE CHAIN 2 B DG 20 0.058 SIDE CHAIN 3 A DA 2 0.097 SIDE CHAIN 3 A DT 3 0.076 SIDE CHAIN 3 A DC 7 0.061 SIDE CHAIN 3 A DA 8 0.066 SIDE CHAIN 3 B DA 12 0.115 SIDE CHAIN 3 B DT 13 0.080 SIDE CHAIN 3 B DC 17 0.063 SIDE CHAIN 3 B DG 20 0.066 SIDE CHAIN 4 A DA 2 0.098 SIDE CHAIN 4 A DT 3 0.078 SIDE CHAIN 4 A DC 7 0.069 SIDE CHAIN 4 B DA 12 0.107 SIDE CHAIN 4 B DT 13 0.079 SIDE CHAIN 4 B DC 17 0.064 SIDE CHAIN 4 B DA 18 0.050 SIDE CHAIN 4 B DG 20 0.059 SIDE CHAIN 5 A DA 2 0.107 SIDE CHAIN 5 A DT 3 0.086 SIDE CHAIN 5 A DC 7 0.072 SIDE CHAIN 5 B DA 12 0.083 SIDE CHAIN 5 B DT 13 0.085 SIDE CHAIN 5 B DC 17 0.062 SIDE CHAIN 6 A DA 2 0.100 SIDE CHAIN 6 A DT 3 0.085 SIDE CHAIN 6 A DC 7 0.066 SIDE CHAIN 6 A DG 10 0.063 SIDE CHAIN 6 B DA 12 0.100 SIDE CHAIN 6 B DT 13 0.082 SIDE CHAIN 6 B DC 17 0.070 SIDE CHAIN 7 A DA 2 0.105 SIDE CHAIN 7 A DT 3 0.083 SIDE CHAIN 7 A DC 7 0.069 SIDE CHAIN 7 B DC 11 0.089 SIDE CHAIN 7 B DA 12 0.090 SIDE CHAIN 7 B DT 13 0.086 SIDE CHAIN 7 B DC 17 0.060 SIDE CHAIN 7 B DG 20 0.060 SIDE CHAIN 8 A DA 2 0.110 SIDE CHAIN 8 A DT 3 0.084 SIDE CHAIN 8 A DC 7 0.066 SIDE CHAIN 8 A DG 10 0.061 SIDE CHAIN 8 B DA 12 0.099 SIDE CHAIN 8 B DT 13 0.074 SIDE CHAIN 8 B DC 17 0.068 SIDE CHAIN 8 B DG 20 0.061 SIDE CHAIN 9 A DA 2 0.095 SIDE CHAIN 9 A DT 3 0.083 SIDE CHAIN 9 A DC 7 0.064 SIDE CHAIN 9 A DA 8 0.049 SIDE CHAIN 9 A DG 10 0.064 SIDE CHAIN 9 B DA 12 0.095 SIDE CHAIN 9 B DT 13 0.076 SIDE CHAIN 9 B DC 17 0.062 SIDE CHAIN 10 A DA 2 0.102 SIDE CHAIN 10 A DT 3 0.079 SIDE CHAIN 10 A DC 7 0.058 SIDE CHAIN 10 A DA 8 0.059 SIDE CHAIN 10 B DA 12 0.103 SIDE CHAIN 10 B DT 13 0.082 SIDE CHAIN 10 B DA 18 0.052 SIDE CHAIN 10 B DG 20 0.055 SIDE CHAIN 1 3.43 0.30 108.30 111.73 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 3.82 0.30 108.30 112.12 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 3.47 0.30 108.30 111.77 B B B O4' C1' N1 DC DC DC 11 11 11 N 1 -3.68 0.60 122.90 119.22 B B B C6 C5 C7 DT DT DT 19 19 19 N 1 3.63 0.30 108.30 111.93 B B B O4' C1' N9 DG DG DG 20 20 20 N 2 3.55 0.30 108.30 111.85 A A A O4' C1' N1 DC DC DC 1 1 1 N 2 3.81 0.30 108.30 112.11 A A A O4' C1' N9 DG DG DG 10 10 10 N 2 3.33 0.30 108.30 111.63 B B B O4' C1' N1 DC DC DC 11 11 11 N 2 -3.78 0.60 122.90 119.12 B B B C6 C5 C7 DT DT DT 19 19 19 N 2 3.14 0.30 108.30 111.44 B B B O4' C1' N9 DG DG DG 20 20 20 N 3 3.13 0.30 108.30 111.43 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 3.55 0.30 108.30 111.85 A A A O4' C1' N9 DG DG DG 10 10 10 N 3 3.14 0.30 108.30 111.44 B B B O4' C1' N1 DC DC DC 11 11 11 N 3 3.68 0.30 108.30 111.98 B B B O4' C1' N9 DG DG DG 20 20 20 N 4 3.18 0.30 108.30 111.48 A A A O4' C1' N1 DC DC DC 1 1 1 N 4 -3.89 0.60 122.90 119.01 A A A C6 C5 C7 DT DT DT 9 9 9 N 4 3.44 0.30 108.30 111.74 A A A O4' C1' N9 DG DG DG 10 10 10 N 4 3.31 0.30 108.30 111.61 B B B O4' C1' N1 DC DC DC 11 11 11 N 4 3.73 0.30 108.30 112.03 B B B O4' C1' N9 DG DG DG 20 20 20 N 5 3.29 0.30 108.30 111.59 A A A O4' C1' N1 DC DC DC 1 1 1 N 5 -3.73 0.60 122.90 119.17 A A A C6 C5 C7 DT DT DT 9 9 9 N 5 1.83 0.30 108.30 110.13 A A A O4' C1' N9 DG DG DG 10 10 10 N 5 2.35 0.30 108.30 110.65 B B B O4' C1' N1 DC DC DC 11 11 11 N 5 3.85 0.60 118.90 122.75 B B B N1 C2 O2 DC DC DC 11 11 11 N 5 2.62 0.30 108.30 110.92 B B B O4' C1' N9 DG DG DG 20 20 20 N 6 3.46 0.30 108.30 111.76 A A A O4' C1' N1 DC DC DC 1 1 1 N 6 -3.81 0.60 122.90 119.09 A A A C6 C5 C7 DT DT DT 9 9 9 N 6 3.85 0.30 108.30 112.15 A A A O4' C1' N9 DG DG DG 10 10 10 N 6 3.26 0.30 108.30 111.56 B B B O4' C1' N1 DC DC DC 11 11 11 N 6 -3.68 0.60 122.90 119.22 B B B C6 C5 C7 DT DT DT 19 19 19 N 6 2.62 0.30 108.30 110.92 B B B O4' C1' N9 DG DG DG 20 20 20 N 7 2.79 0.30 108.30 111.09 A A A O4' C1' N9 DG DG DG 10 10 10 N 7 2.24 0.30 108.30 110.54 B B B O4' C1' N1 DC DC DC 11 11 11 N 7 3.49 0.30 108.30 111.79 B B B O4' C1' N9 DG DG DG 20 20 20 N 8 -3.84 0.60 122.90 119.06 A A A C6 C5 C7 DT DT DT 9 9 9 N 8 3.83 0.30 108.30 112.13 A A A O4' C1' N9 DG DG DG 10 10 10 N 8 3.25 0.30 108.30 111.55 B B B O4' C1' N1 DC DC DC 11 11 11 N 8 3.77 0.30 108.30 112.07 B B B O4' C1' N9 DG DG DG 20 20 20 N 9 3.32 0.30 108.30 111.62 A A A O4' C1' N1 DC DC DC 1 1 1 N 9 3.67 0.30 108.30 111.97 A A A O4' C1' N9 DG DG DG 10 10 10 N 9 3.02 0.30 108.30 111.32 B B B O4' C1' N1 DC DC DC 11 11 11 N 9 -4.23 0.60 122.90 118.67 B B B C6 C5 C7 DT DT DT 19 19 19 N 9 2.72 0.30 108.30 111.02 B B B O4' C1' N9 DG DG DG 20 20 20 N 10 3.69 0.30 108.30 111.99 A A A O4' C1' N9 DG DG DG 10 10 10 N 10 2.74 0.30 108.30 111.04 B B B O4' C1' N1 DC DC DC 11 11 11 N 10 -3.72 0.60 122.90 119.18 B B B C6 C5 C7 DT DT DT 19 19 19 N 10 3.39 0.30 108.30 111.69 B B B O4' C1' N9 DG DG DG 20 20 20 N NMR STRUCTURE OF THE DNA DECAMER D(CATGGCCATG)2, 10 STRUCTURES 1 N N 1 N N hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 19 B N3 DT 9 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 19 B O4 DT 9 1_555 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 B DA 18 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 B DA 18 B N6 DA 8 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 17 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 17 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 17 B N4 DC 7 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 16 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 16 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 16 B N4 DC 6 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 15 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 15 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 15 B N2 DG 5 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 14 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 14 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 14 B N2 DG 4 1_555 hydrog WATSON-CRICK A DA 8 A N1 DA 8 1_555 B DT 13 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 8 A N6 DA 8 1_555 B DT 13 B O4 DT 3 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 B DA 12 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 B DA 12 B N6 DA 2 1_555 DNA DEOXYRIBONUCLEIC ACID, DNA 1BUT PDB 1 1BUT 1 10 1BUT 1 10 1BUT A 1 1 10 11 20 1BUT 11 20 1BUT B 1 1 10 1 P 1