0.013986 0.008075 0.000000 0.000000 0.016150 0.000000 0.000000 0.000000 0.006498 0.00000 0.00000 0.00000 Xu, Y. Schneider, B. Deville-Bonne, D. Veron, M. Janin, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 71.500 71.500 153.900 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C10 H15 N5 O13 P2 S 507.264 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N S N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N N N 234 S C N 235 N C N 236 N O N 237 N C Y 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N C Y 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N S N 257 N O N 258 N O N 259 N O N 260 N O N 261 S P N 262 N O N 263 N O N 264 N O N 265 N C N 266 R C N 267 N O N 268 R C Y 269 N N Y 270 N C Y 271 N N Y 272 N C Y 273 N N Y 274 N C N 275 N N Y 276 N C Y 277 N N Y 278 N C N 279 R C N 280 N O N 281 S C N 282 N O N 283 N P N 284 N O N 285 N O N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N C N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C N 324 N O N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 R C N 338 N O N 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N N Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing Y 233 N doub Y 234 N sing Y 235 N sing N 236 N sing Y 237 N doub N 238 N sing Y 239 N doub N 240 N sing Y 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing Y 266 N sing Y 267 N sing Y 268 N sing Y 269 N doub Y 270 N doub Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N sing N 276 N sing N 277 N sing Y 278 N sing Y 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N sing Y 359 N doub N 360 N sing Y 361 N doub N 362 N sing Y 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing Y 378 N doub Y 379 N sing Y 380 N sing N 381 N sing Y 382 N doub N 383 N sing Y 384 N doub N 385 N sing Y 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 273 28773 28778 10.1074/jbc.273.44.28773 9786875 3'-Phosphorylated nucleotides are tight binding inhibitors of nucleoside diphosphate kinase activity. 1998 US Biochemistry BICHAW 0033 0006-2960 34 11062 Mechanism of Phosphate Transfer by Nucleoside Diphosphate Kinase: X-Ray Structures of the Phosphohistidine Intermediate of the Enzymes from Drosophila and Dictyostelium 1995 US Biochemistry BICHAW 0033 0006-2960 33 459 Adenosine 5'-Diphosphate Binding and the Active Site of Nucleoside Diphosphate Kinase 1994 10.2210/pdb1bux/pdb pdb_00001bux 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277 1 IMAGE PLATE 1997-04 RIGAKU M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 16816.336 NUCLEOSIDE DIPHOSPHATE KINASE 2.7.4.6 3 man polymer 507.264 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE 3 syn non-polymer NDP KINASE no no MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Dictyostelium Escherichia sample 44689 Dictyostelium discoideum 562 Escherichia coli 1 2.25 38. 7.5 pH 7.5 chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1999-04-27 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-09-07 REL PPS 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE PPS 160 2 PPS PPS 160 A PPS 160 2 PPS PPS 160 B PPS 160 2 PPS PPS 160 C n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A VAL 6 n 6 VAL 6 A ASN 7 n 7 ASN 7 A LYS 8 n 8 LYS 8 A GLU 9 n 9 GLU 9 A ARG 10 n 10 ARG 10 A THR 11 n 11 THR 11 A PHE 12 n 12 PHE 12 A LEU 13 n 13 LEU 13 A ALA 14 n 14 ALA 14 A VAL 15 n 15 VAL 15 A LYS 16 n 16 LYS 16 A PRO 17 n 17 PRO 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A VAL 20 n 20 VAL 20 A ALA 21 n 21 ALA 21 A ARG 22 n 22 ARG 22 A GLY 23 n 23 GLY 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A GLY 26 n 26 GLY 26 A GLU 27 n 27 GLU 27 A ILE 28 n 28 ILE 28 A ILE 29 n 29 ILE 29 A ALA 30 n 30 ALA 30 A ARG 31 n 31 ARG 31 A TYR 32 n 32 TYR 32 A GLU 33 n 33 GLU 33 A LYS 34 n 34 LYS 34 A LYS 35 n 35 LYS 35 A GLY 36 n 36 GLY 36 A PHE 37 n 37 PHE 37 A VAL 38 n 38 VAL 38 A LEU 39 n 39 LEU 39 A VAL 40 n 40 VAL 40 A GLY 41 n 41 GLY 41 A LEU 42 n 42 LEU 42 A LYS 43 n 43 LYS 43 A GLN 44 n 44 GLN 44 A LEU 45 n 45 LEU 45 A VAL 46 n 46 VAL 46 A PRO 47 n 47 PRO 47 A THR 48 n 48 THR 48 A LYS 49 n 49 LYS 49 A ASP 50 n 50 ASP 50 A LEU 51 n 51 LEU 51 A ALA 52 n 52 ALA 52 A GLU 53 n 53 GLU 53 A SER 54 n 54 SER 54 A HIS 55 n 55 HIS 55 A TYR 56 n 56 TYR 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A HIS 59 n 59 HIS 59 A LYS 60 n 60 LYS 60 A GLU 61 n 61 GLU 61 A ARG 62 n 62 ARG 62 A PRO 63 n 63 PRO 63 A PHE 64 n 64 PHE 64 A PHE 65 n 65 PHE 65 A GLY 66 n 66 GLY 66 A GLY 67 n 67 GLY 67 A LEU 68 n 68 LEU 68 A VAL 69 n 69 VAL 69 A SER 70 n 70 SER 70 A PHE 71 n 71 PHE 71 A ILE 72 n 72 ILE 72 A THR 73 n 73 THR 73 A SER 74 n 74 SER 74 A GLY 75 n 75 GLY 75 A PRO 76 n 76 PRO 76 A VAL 77 n 77 VAL 77 A VAL 78 n 78 VAL 78 A ALA 79 n 79 ALA 79 A MET 80 n 80 MET 80 A VAL 81 n 81 VAL 81 A PHE 82 n 82 PHE 82 A GLU 83 n 83 GLU 83 A GLY 84 n 84 GLY 84 A LYS 85 n 85 LYS 85 A GLY 86 n 86 GLY 86 A VAL 87 n 87 VAL 87 A VAL 88 n 88 VAL 88 A ALA 89 n 89 ALA 89 A SER 90 n 90 SER 90 A ALA 91 n 91 ALA 91 A ARG 92 n 92 ARG 92 A LEU 93 n 93 LEU 93 A MET 94 n 94 MET 94 A ILE 95 n 95 ILE 95 A GLY 96 n 96 GLY 96 A VAL 97 n 97 VAL 97 A THR 98 n 98 THR 98 A ASN 99 n 99 ASN 99 A PRO 100 n 100 PRO 100 A LEU 101 n 101 LEU 101 A ALA 102 n 102 ALA 102 A SER 103 n 103 SER 103 A ALA 104 n 104 ALA 104 A PRO 105 n 105 PRO 105 A GLY 106 n 106 GLY 106 A SER 107 n 107 SER 107 A ILE 108 n 108 ILE 108 A ARG 109 n 109 ARG 109 A GLY 110 n 110 GLY 110 A ASP 111 n 111 ASP 111 A PHE 112 n 112 PHE 112 A GLY 113 n 113 GLY 113 A VAL 114 n 114 VAL 114 A ASP 115 n 115 ASP 115 A VAL 116 n 116 VAL 116 A GLY 117 n 117 GLY 117 A ARG 118 n 118 ARG 118 A ASN 119 n 119 ASN 119 A ILE 120 n 120 ILE 120 A ILE 121 n 121 ILE 121 A HIS 122 n 122 HIS 122 A GLY 123 n 123 GLY 123 A SER 124 n 124 SER 124 A ASP 125 n 125 ASP 125 A SER 126 n 126 SER 126 A VAL 127 n 127 VAL 127 A GLU 128 n 128 GLU 128 A SER 129 n 129 SER 129 A ALA 130 n 130 ALA 130 A ASN 131 n 131 ASN 131 A ARG 132 n 132 ARG 132 A GLU 133 n 133 GLU 133 A ILE 134 n 134 ILE 134 A ALA 135 n 135 ALA 135 A LEU 136 n 136 LEU 136 A TRP 137 n 137 TRP 137 A PHE 138 n 138 PHE 138 A LYS 139 n 139 LYS 139 A PRO 140 n 140 PRO 140 A GLU 141 n 141 GLU 141 A GLU 142 n 142 GLU 142 A LEU 143 n 143 LEU 143 A LEU 144 n 144 LEU 144 A THR 145 n 145 THR 145 A GLU 146 n 146 GLU 146 A VAL 147 n 147 VAL 147 A LYS 148 n 148 LYS 148 A PRO 149 n 149 PRO 149 A ASN 150 n 150 ASN 150 A PRO 151 n 151 PRO 151 A ASN 152 n 152 ASN 152 A LEU 153 n 153 LEU 153 A TYR 154 n 154 TYR 154 A GLU 155 n 155 GLU 155 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B VAL 6 n 6 VAL 6 B ASN 7 n 7 ASN 7 B LYS 8 n 8 LYS 8 B GLU 9 n 9 GLU 9 B ARG 10 n 10 ARG 10 B THR 11 n 11 THR 11 B PHE 12 n 12 PHE 12 B LEU 13 n 13 LEU 13 B ALA 14 n 14 ALA 14 B VAL 15 n 15 VAL 15 B LYS 16 n 16 LYS 16 B PRO 17 n 17 PRO 17 B ASP 18 n 18 ASP 18 B GLY 19 n 19 GLY 19 B VAL 20 n 20 VAL 20 B ALA 21 n 21 ALA 21 B ARG 22 n 22 ARG 22 B GLY 23 n 23 GLY 23 B LEU 24 n 24 LEU 24 B VAL 25 n 25 VAL 25 B GLY 26 n 26 GLY 26 B GLU 27 n 27 GLU 27 B ILE 28 n 28 ILE 28 B ILE 29 n 29 ILE 29 B ALA 30 n 30 ALA 30 B ARG 31 n 31 ARG 31 B TYR 32 n 32 TYR 32 B GLU 33 n 33 GLU 33 B LYS 34 n 34 LYS 34 B LYS 35 n 35 LYS 35 B GLY 36 n 36 GLY 36 B PHE 37 n 37 PHE 37 B VAL 38 n 38 VAL 38 B LEU 39 n 39 LEU 39 B VAL 40 n 40 VAL 40 B GLY 41 n 41 GLY 41 B LEU 42 n 42 LEU 42 B LYS 43 n 43 LYS 43 B GLN 44 n 44 GLN 44 B LEU 45 n 45 LEU 45 B VAL 46 n 46 VAL 46 B PRO 47 n 47 PRO 47 B THR 48 n 48 THR 48 B LYS 49 n 49 LYS 49 B ASP 50 n 50 ASP 50 B LEU 51 n 51 LEU 51 B ALA 52 n 52 ALA 52 B GLU 53 n 53 GLU 53 B SER 54 n 54 SER 54 B HIS 55 n 55 HIS 55 B TYR 56 n 56 TYR 56 B ALA 57 n 57 ALA 57 B GLU 58 n 58 GLU 58 B HIS 59 n 59 HIS 59 B LYS 60 n 60 LYS 60 B GLU 61 n 61 GLU 61 B ARG 62 n 62 ARG 62 B PRO 63 n 63 PRO 63 B PHE 64 n 64 PHE 64 B PHE 65 n 65 PHE 65 B GLY 66 n 66 GLY 66 B GLY 67 n 67 GLY 67 B LEU 68 n 68 LEU 68 B VAL 69 n 69 VAL 69 B SER 70 n 70 SER 70 B PHE 71 n 71 PHE 71 B ILE 72 n 72 ILE 72 B THR 73 n 73 THR 73 B SER 74 n 74 SER 74 B GLY 75 n 75 GLY 75 B PRO 76 n 76 PRO 76 B VAL 77 n 77 VAL 77 B VAL 78 n 78 VAL 78 B ALA 79 n 79 ALA 79 B MET 80 n 80 MET 80 B VAL 81 n 81 VAL 81 B PHE 82 n 82 PHE 82 B GLU 83 n 83 GLU 83 B GLY 84 n 84 GLY 84 B LYS 85 n 85 LYS 85 B GLY 86 n 86 GLY 86 B VAL 87 n 87 VAL 87 B VAL 88 n 88 VAL 88 B ALA 89 n 89 ALA 89 B SER 90 n 90 SER 90 B ALA 91 n 91 ALA 91 B ARG 92 n 92 ARG 92 B LEU 93 n 93 LEU 93 B MET 94 n 94 MET 94 B ILE 95 n 95 ILE 95 B GLY 96 n 96 GLY 96 B VAL 97 n 97 VAL 97 B THR 98 n 98 THR 98 B ASN 99 n 99 ASN 99 B PRO 100 n 100 PRO 100 B LEU 101 n 101 LEU 101 B ALA 102 n 102 ALA 102 B SER 103 n 103 SER 103 B ALA 104 n 104 ALA 104 B PRO 105 n 105 PRO 105 B GLY 106 n 106 GLY 106 B SER 107 n 107 SER 107 B ILE 108 n 108 ILE 108 B ARG 109 n 109 ARG 109 B GLY 110 n 110 GLY 110 B ASP 111 n 111 ASP 111 B PHE 112 n 112 PHE 112 B GLY 113 n 113 GLY 113 B VAL 114 n 114 VAL 114 B ASP 115 n 115 ASP 115 B VAL 116 n 116 VAL 116 B GLY 117 n 117 GLY 117 B ARG 118 n 118 ARG 118 B ASN 119 n 119 ASN 119 B ILE 120 n 120 ILE 120 B ILE 121 n 121 ILE 121 B HIS 122 n 122 HIS 122 B GLY 123 n 123 GLY 123 B SER 124 n 124 SER 124 B ASP 125 n 125 ASP 125 B SER 126 n 126 SER 126 B VAL 127 n 127 VAL 127 B GLU 128 n 128 GLU 128 B SER 129 n 129 SER 129 B ALA 130 n 130 ALA 130 B ASN 131 n 131 ASN 131 B ARG 132 n 132 ARG 132 B GLU 133 n 133 GLU 133 B ILE 134 n 134 ILE 134 B ALA 135 n 135 ALA 135 B LEU 136 n 136 LEU 136 B TRP 137 n 137 TRP 137 B PHE 138 n 138 PHE 138 B LYS 139 n 139 LYS 139 B PRO 140 n 140 PRO 140 B GLU 141 n 141 GLU 141 B GLU 142 n 142 GLU 142 B LEU 143 n 143 LEU 143 B LEU 144 n 144 LEU 144 B THR 145 n 145 THR 145 B GLU 146 n 146 GLU 146 B VAL 147 n 147 VAL 147 B LYS 148 n 148 LYS 148 B PRO 149 n 149 PRO 149 B ASN 150 n 150 ASN 150 B PRO 151 n 151 PRO 151 B ASN 152 n 152 ASN 152 B LEU 153 n 153 LEU 153 B TYR 154 n 154 TYR 154 B GLU 155 n 155 GLU 155 B n 1 1 C n 2 2 C n 3 3 C n 4 4 C n 5 5 C VAL 6 n 6 VAL 6 C ASN 7 n 7 ASN 7 C LYS 8 n 8 LYS 8 C GLU 9 n 9 GLU 9 C ARG 10 n 10 ARG 10 C THR 11 n 11 THR 11 C PHE 12 n 12 PHE 12 C LEU 13 n 13 LEU 13 C ALA 14 n 14 ALA 14 C VAL 15 n 15 VAL 15 C LYS 16 n 16 LYS 16 C PRO 17 n 17 PRO 17 C ASP 18 n 18 ASP 18 C GLY 19 n 19 GLY 19 C VAL 20 n 20 VAL 20 C ALA 21 n 21 ALA 21 C ARG 22 n 22 ARG 22 C GLY 23 n 23 GLY 23 C LEU 24 n 24 LEU 24 C VAL 25 n 25 VAL 25 C GLY 26 n 26 GLY 26 C GLU 27 n 27 GLU 27 C ILE 28 n 28 ILE 28 C ILE 29 n 29 ILE 29 C ALA 30 n 30 ALA 30 C ARG 31 n 31 ARG 31 C TYR 32 n 32 TYR 32 C GLU 33 n 33 GLU 33 C LYS 34 n 34 LYS 34 C LYS 35 n 35 LYS 35 C GLY 36 n 36 GLY 36 C PHE 37 n 37 PHE 37 C VAL 38 n 38 VAL 38 C LEU 39 n 39 LEU 39 C VAL 40 n 40 VAL 40 C GLY 41 n 41 GLY 41 C LEU 42 n 42 LEU 42 C LYS 43 n 43 LYS 43 C GLN 44 n 44 GLN 44 C LEU 45 n 45 LEU 45 C VAL 46 n 46 VAL 46 C PRO 47 n 47 PRO 47 C THR 48 n 48 THR 48 C LYS 49 n 49 LYS 49 C ASP 50 n 50 ASP 50 C LEU 51 n 51 LEU 51 C ALA 52 n 52 ALA 52 C GLU 53 n 53 GLU 53 C SER 54 n 54 SER 54 C HIS 55 n 55 HIS 55 C TYR 56 n 56 TYR 56 C ALA 57 n 57 ALA 57 C GLU 58 n 58 GLU 58 C HIS 59 n 59 HIS 59 C LYS 60 n 60 LYS 60 C GLU 61 n 61 GLU 61 C ARG 62 n 62 ARG 62 C PRO 63 n 63 PRO 63 C PHE 64 n 64 PHE 64 C PHE 65 n 65 PHE 65 C GLY 66 n 66 GLY 66 C GLY 67 n 67 GLY 67 C LEU 68 n 68 LEU 68 C VAL 69 n 69 VAL 69 C SER 70 n 70 SER 70 C PHE 71 n 71 PHE 71 C ILE 72 n 72 ILE 72 C THR 73 n 73 THR 73 C SER 74 n 74 SER 74 C GLY 75 n 75 GLY 75 C PRO 76 n 76 PRO 76 C VAL 77 n 77 VAL 77 C VAL 78 n 78 VAL 78 C ALA 79 n 79 ALA 79 C MET 80 n 80 MET 80 C VAL 81 n 81 VAL 81 C PHE 82 n 82 PHE 82 C GLU 83 n 83 GLU 83 C GLY 84 n 84 GLY 84 C LYS 85 n 85 LYS 85 C GLY 86 n 86 GLY 86 C VAL 87 n 87 VAL 87 C VAL 88 n 88 VAL 88 C ALA 89 n 89 ALA 89 C SER 90 n 90 SER 90 C ALA 91 n 91 ALA 91 C ARG 92 n 92 ARG 92 C LEU 93 n 93 LEU 93 C MET 94 n 94 MET 94 C ILE 95 n 95 ILE 95 C GLY 96 n 96 GLY 96 C VAL 97 n 97 VAL 97 C THR 98 n 98 THR 98 C ASN 99 n 99 ASN 99 C PRO 100 n 100 PRO 100 C LEU 101 n 101 LEU 101 C ALA 102 n 102 ALA 102 C SER 103 n 103 SER 103 C ALA 104 n 104 ALA 104 C PRO 105 n 105 PRO 105 C GLY 106 n 106 GLY 106 C SER 107 n 107 SER 107 C ILE 108 n 108 ILE 108 C ARG 109 n 109 ARG 109 C GLY 110 n 110 GLY 110 C ASP 111 n 111 ASP 111 C PHE 112 n 112 PHE 112 C GLY 113 n 113 GLY 113 C VAL 114 n 114 VAL 114 C ASP 115 n 115 ASP 115 C VAL 116 n 116 VAL 116 C GLY 117 n 117 GLY 117 C ARG 118 n 118 ARG 118 C ASN 119 n 119 ASN 119 C ILE 120 n 120 ILE 120 C ILE 121 n 121 ILE 121 C HIS 122 n 122 HIS 122 C GLY 123 n 123 GLY 123 C SER 124 n 124 SER 124 C ASP 125 n 125 ASP 125 C SER 126 n 126 SER 126 C VAL 127 n 127 VAL 127 C GLU 128 n 128 GLU 128 C SER 129 n 129 SER 129 C ALA 130 n 130 ALA 130 C ASN 131 n 131 ASN 131 C ARG 132 n 132 ARG 132 C GLU 133 n 133 GLU 133 C ILE 134 n 134 ILE 134 C ALA 135 n 135 ALA 135 C LEU 136 n 136 LEU 136 C TRP 137 n 137 TRP 137 C PHE 138 n 138 PHE 138 C LYS 139 n 139 LYS 139 C PRO 140 n 140 PRO 140 C GLU 141 n 141 GLU 141 C GLU 142 n 142 GLU 142 C LEU 143 n 143 LEU 143 C LEU 144 n 144 LEU 144 C THR 145 n 145 THR 145 C GLU 146 n 146 GLU 146 C VAL 147 n 147 VAL 147 C LYS 148 n 148 LYS 148 C PRO 149 n 149 PRO 149 C ASN 150 n 150 ASN 150 C PRO 151 n 151 PRO 151 C ASN 152 n 152 ASN 152 C LEU 153 n 153 LEU 153 C TYR 154 n 154 TYR 154 C GLU 155 n 155 GLU 155 C author_defined_assembly 6 hexameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_765 -x+2,-x+y+1,-z+1/3 crystal symmetry operation 107.2500000000 61.9208163706 51.3000000000 A O HIS 122 A O HIS 122 A N ALA 14 A N ALA 14 A O THR 11 A O THR 11 A N PHE 82 A N PHE 82 A O VAL 77 A O VAL 77 A N LEU 45 A N LEU 45 B O HIS 122 B O HIS 122 B N ALA 14 B N ALA 14 B O THR 11 B O THR 11 B N PHE 82 B N PHE 82 B O VAL 77 B O VAL 77 B N LEU 45 B N LEU 45 C O HIS 122 C O HIS 122 C N ALA 14 C N ALA 14 C O THR 11 C O THR 11 C N PHE 82 C N PHE 82 C O VAL 77 C O VAL 77 C N LEU 45 C N LEU 45 1 B S2 PPS 160 E S2 PPS 1 1 N 1 B OS1 PPS 160 E OS1 PPS 1 1 N 1 B OS2 PPS 160 E OS2 PPS 1 1 N 1 B OS3 PPS 160 E OS3 PPS 1 1 N 1 C S2 PPS 160 F S2 PPS 1 1 N 1 C OS1 PPS 160 F OS1 PPS 1 1 N 1 C OS2 PPS 160 F OS2 PPS 1 1 N 1 C OS3 PPS 160 F OS3 PPS 1 1 N 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A ASN 4 A ASN 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A THR 145 A THR 145 0 Y 1 B MET 1 B MET 1 1 Y 1 B SER 2 B SER 2 1 Y 1 B THR 3 B THR 3 1 Y 1 B ASN 4 B ASN 4 1 Y 1 B LYS 5 B LYS 5 1 Y 1 B THR 145 B THR 145 0 Y 1 C MET 1 C MET 1 1 Y 1 C SER 2 C SER 2 1 Y 1 C THR 3 C THR 3 1 Y 1 C ASN 4 C ASN 4 1 Y 1 C LYS 5 C LYS 5 1 Y 1 C THR 145 C THR 145 0 Y 1 B TYR 32 0.078 SIDE CHAIN 1 A ASN 7 -74.52 34.94 1 A THR 98 -26.98 -61.74 1 A VAL 114 -144.28 -35.37 1 A ILE 120 58.11 -50.82 1 B ASN 7 -68.81 34.80 1 B GLU 58 -58.56 -3.86 1 B GLU 61 -107.60 41.51 1 B ILE 72 -68.89 0.27 1 B VAL 114 -141.17 -22.73 1 B ASN 119 -103.48 41.55 1 B ILE 120 56.28 -49.93 1 C ASN 7 -68.74 32.11 1 C PRO 17 -37.81 -33.87 1 C LEU 42 -171.85 144.77 1 C VAL 114 -143.19 -28.43 1 C ARG 118 -118.50 75.88 1 C ILE 120 66.73 -55.93 31.6 0.3120000 0.2040000 0.2040000 2.8 10 10268 10 89.5 RANDOM 1 THROUGHOUT 2.0 MOLECULAR REPLACEMENT 4.5 0.34 2.8 10 0 3526 85 0 3441 0.013 1.8 1.53 58.5 2.8 15 1BUX 10703 0 0.0730000 1 18.0 2.8 91.5 2.8 2.9 3.3 0.3380000 95.7 model building X-PLOR refinement X-PLOR data reduction DENZO data scaling SCALEPACK phasing X-PLOR 3'-PHOSPHORYLATED NUCLEOTIDES BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N A PRO 17 A PRO 17 HELX_P A ALA 21 A ALA 21 1 1 5 A VAL 25 A VAL 25 HELX_P A LYS 35 A LYS 35 1 2 11 A LYS 49 A LYS 49 HELX_P A HIS 55 A HIS 55 1 3 7 A ALA 57 A ALA 57 HELX_P A HIS 59 A HIS 59 5 4 3 A PHE 65 A PHE 65 HELX_P A THR 73 A THR 73 1 5 9 A VAL 87 A VAL 87 HELX_P A ILE 95 A ILE 95 1 6 9 A PRO 100 A PRO 100 HELX_P A ALA 102 A ALA 102 5 7 3 A ILE 108 A ILE 108 HELX_P A PHE 112 A PHE 112 1 8 5 A VAL 116 A VAL 116 HELX_P A ARG 118 A ARG 118 5 9 3 A VAL 127 A VAL 127 HELX_P A TRP 137 A TRP 137 1 10 11 A PRO 140 A PRO 140 HELX_P A GLU 142 A GLU 142 5 11 3 B PRO 17 B PRO 17 HELX_P B ARG 22 B ARG 22 1 12 6 B VAL 25 B VAL 25 HELX_P B LYS 35 B LYS 35 1 13 11 B LYS 49 B LYS 49 HELX_P B HIS 55 B HIS 55 1 14 7 B ALA 57 B ALA 57 HELX_P B HIS 59 B HIS 59 5 15 3 B PRO 63 B PRO 63 HELX_P B THR 73 B THR 73 5 16 11 B VAL 87 B VAL 87 HELX_P B ILE 95 B ILE 95 1 17 9 B PRO 100 B PRO 100 HELX_P B ALA 102 B ALA 102 5 18 3 B ILE 108 B ILE 108 HELX_P B PHE 112 B PHE 112 1 19 5 B VAL 116 B VAL 116 HELX_P B ARG 118 B ARG 118 5 20 3 B VAL 127 B VAL 127 HELX_P B TRP 137 B TRP 137 1 21 11 B PRO 140 B PRO 140 HELX_P B GLU 142 B GLU 142 5 22 3 C PRO 17 C PRO 17 HELX_P C ALA 21 C ALA 21 1 23 5 C VAL 25 C VAL 25 HELX_P C LYS 35 C LYS 35 1 24 11 C LYS 49 C LYS 49 HELX_P C HIS 55 C HIS 55 1 25 7 C ALA 57 C ALA 57 HELX_P C HIS 59 C HIS 59 5 26 3 C PHE 65 C PHE 65 HELX_P C THR 73 C THR 73 1 27 9 C VAL 87 C VAL 87 HELX_P C ILE 95 C ILE 95 1 28 9 C PRO 100 C PRO 100 HELX_P C ALA 102 C ALA 102 5 29 3 C ILE 108 C ILE 108 HELX_P C PHE 112 C PHE 112 1 30 5 C VAL 127 C VAL 127 HELX_P C TRP 137 C TRP 137 1 31 11 C PRO 140 C PRO 140 HELX_P C GLU 142 C GLU 142 5 32 3 PHOSPHOTRANSFERASE PHOSPHOTRANSFERASE, INHIBITOR, PAPS NDKC_DICDI UNP 1 1 P22887 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 1 155 1BUX 1 155 P22887 A 1 1 155 1 155 1BUX 1 155 P22887 B 1 1 155 1 155 1BUX 1 155 P22887 C 1 1 155 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 121 A ILE 121 A GLY 123 A GLY 123 A ARG 10 A ARG 10 A VAL 15 A VAL 15 A PRO 76 A PRO 76 A GLU 83 A GLU 83 A VAL 38 A VAL 38 A VAL 46 A VAL 46 B ILE 121 B ILE 121 B GLY 123 B GLY 123 B ARG 10 B ARG 10 B VAL 15 B VAL 15 B PRO 76 B PRO 76 B GLU 83 B GLU 83 B VAL 38 B VAL 38 B VAL 46 B VAL 46 C ILE 121 C ILE 121 C GLY 123 C GLY 123 C ARG 10 C ARG 10 C VAL 15 C VAL 15 C PRO 76 C PRO 76 C GLU 83 C GLU 83 C VAL 38 C VAL 38 C VAL 46 C VAL 46 BINDING SITE FOR RESIDUE PPS A 160 A PPS 160 Software 9 BINDING SITE FOR RESIDUE PPS B 160 B PPS 160 Software 11 BINDING SITE FOR RESIDUE PPS C 160 C PPS 160 Software 8 A LYS 16 A LYS 16 9 1_555 A TYR 56 A TYR 56 9 1_555 A ARG 62 A ARG 62 9 1_555 A PHE 64 A PHE 64 9 1_555 A LEU 68 A LEU 68 9 1_555 A ARG 92 A ARG 92 9 1_555 A THR 98 A THR 98 9 1_555 A ASN 119 A ASN 119 9 1_555 A HIS 122 A HIS 122 9 1_555 A LYS 60 A LYS 60 11 4_545 B LYS 16 B LYS 16 11 1_555 B TYR 56 B TYR 56 11 1_555 B HIS 59 B HIS 59 11 1_555 B PHE 64 B PHE 64 11 1_555 B LEU 68 B LEU 68 11 1_555 B THR 98 B THR 98 11 1_555 B ARG 109 B ARG 109 11 1_555 B VAL 116 B VAL 116 11 1_555 B ASN 119 B ASN 119 11 1_555 B HIS 122 B HIS 122 11 1_555 C LYS 16 C LYS 16 8 1_555 C TYR 56 C TYR 56 8 1_555 C HIS 59 C HIS 59 8 1_555 C PHE 64 C PHE 64 8 1_555 C LEU 68 C LEU 68 8 1_555 C THR 98 C THR 98 8 1_555 C ASN 119 C ASN 119 8 1_555 C HIS 122 C HIS 122 8 1_555 152 P 31 2 1