0.015923 0.009193 0.000000 0.000000 0.018387 0.000000 0.000000 0.000000 0.011976 0.00000 0.00000 0.00000 Ala, P. Chang, C.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 62.800 62.800 83.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C41 H38 N6 O5 S2 758.908 [4R-(4ALPHA,5ALPHA,6BETA,7BETA)]-3,3'-[[TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-D IYL] BIS(METHYLENE)]BIS[N-2-THIAZOLYLBENZAMIDE] XV638 non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N O N 392 N O N 393 N O N 394 N N N 395 N N N 396 N C N 397 N C N 398 R C N 399 S C N 400 S C N 401 R C N 402 N C N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C N 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C Y 420 N C Y 421 N C Y 422 N C N 423 N C N 424 N O N 425 N N Y 426 N N Y 427 N C Y 428 N C Y 429 N S Y 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C N 437 N C N 438 N O N 439 N N Y 440 N N Y 441 N C Y 442 N C Y 443 N S Y 444 N C N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing Y 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing Y 419 N doub Y 420 N sing Y 421 N sing N 422 N sing Y 423 N doub N 424 N sing Y 425 N sing N 426 N sing Y 427 N doub N 428 N sing N 429 N sing Y 430 N doub Y 431 N sing Y 432 N sing N 433 N sing Y 434 N doub N 435 N sing Y 436 N sing N 437 N sing Y 438 N doub N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing Y 445 N doub Y 446 N sing Y 447 N sing Y 448 N doub N 449 N sing Y 450 N sing N 451 N sing Y 452 N doub Y 453 N sing Y 454 N sing N 455 N sing Y 456 N doub N 457 N sing Y 458 N sing N 459 N sing Y 460 N doub N 461 N sing N 462 N sing N 463 N doub N 464 N sing N 465 N sing N 466 N sing Y 467 N doub Y 468 N sing Y 469 N sing Y 470 N doub N 471 N sing Y 472 N sing N 473 N sing US Biochemistry BICHAW 0033 0006-2960 37 15042 15049 10.1021/bi980386e 9790666 Counteracting HIV-1 protease drug resistance: structural analysis of mutant proteases complexed with XV638 and SD146, cyclic urea amides with broad specificities. 1998 10.2210/pdb1bv9/pdb pdb_00001bv9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 278 1 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE 10775.703 PROTEIN (HIV-1 PROTEASE) 3.4.23.16 I84V 2 man polymer 758.908 [4R-(4ALPHA,5ALPHA,6BETA,7BETA)]-3,3'-[[TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-D IYL] BIS(METHYLENE)]BIS[N-2-THIAZOLYLBENZAMIDE] 1 syn non-polymer 18.015 water 90 nat water no no PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNVIGRNLLTQIGCTLNF PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNVIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus BH102 Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli 2.20 44.20 6.5 pH 6.5 struct_conf struct_conf_type chem_comp database_2 entity pdbx_entity_nonpoly struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Derived calculations Database references Derived calculations Structure summary Data collection 1 0 1998-09-30 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-11-29 1 4 2021-11-03 1 5 2024-02-07 _chem_comp.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y RCSB 1998-09-22 REL XV6 [4R-(4ALPHA,5ALPHA,6BETA,7BETA)]-3,3'-[[TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-D IYL] BIS(METHYLENE)]BIS[N-2-THIAZOLYLBENZAMIDE] HOH water XV6 638 2 XV6 XV6 638 A HOH 402 3 HOH HOH 402 A HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A HOH 412 3 HOH HOH 412 A HOH 416 3 HOH HOH 416 A HOH 418 3 HOH HOH 418 A HOH 421 3 HOH HOH 421 A HOH 423 3 HOH HOH 423 A HOH 426 3 HOH HOH 426 A HOH 429 3 HOH HOH 429 A HOH 430 3 HOH HOH 430 A HOH 431 3 HOH HOH 431 A HOH 435 3 HOH HOH 435 A HOH 437 3 HOH HOH 437 A HOH 440 3 HOH HOH 440 A HOH 441 3 HOH HOH 441 A HOH 443 3 HOH HOH 443 A HOH 446 3 HOH HOH 446 A HOH 452 3 HOH HOH 452 A HOH 456 3 HOH HOH 456 A HOH 459 3 HOH HOH 459 A HOH 461 3 HOH HOH 461 A HOH 462 3 HOH HOH 462 A HOH 463 3 HOH HOH 463 A HOH 467 3 HOH HOH 467 A HOH 468 3 HOH HOH 468 A HOH 470 3 HOH HOH 470 A HOH 471 3 HOH HOH 471 A HOH 472 3 HOH HOH 472 A HOH 476 3 HOH HOH 476 A HOH 478 3 HOH HOH 478 A HOH 487 3 HOH HOH 487 A HOH 489 3 HOH HOH 489 A HOH 490 3 HOH HOH 490 A HOH 492 3 HOH HOH 492 A HOH 494 3 HOH HOH 494 A HOH 495 3 HOH HOH 495 A HOH 497 3 HOH HOH 497 A HOH 401 3 HOH HOH 401 B HOH 405 3 HOH HOH 405 B HOH 407 3 HOH HOH 407 B HOH 408 3 HOH HOH 408 B HOH 409 3 HOH HOH 409 B HOH 413 3 HOH HOH 413 B HOH 414 3 HOH HOH 414 B HOH 415 3 HOH HOH 415 B HOH 417 3 HOH HOH 417 B HOH 419 3 HOH HOH 419 B HOH 420 3 HOH HOH 420 B HOH 422 3 HOH HOH 422 B HOH 424 3 HOH HOH 424 B HOH 425 3 HOH HOH 425 B HOH 428 3 HOH HOH 428 B HOH 432 3 HOH HOH 432 B HOH 433 3 HOH HOH 433 B HOH 434 3 HOH HOH 434 B HOH 436 3 HOH HOH 436 B HOH 438 3 HOH HOH 438 B HOH 439 3 HOH HOH 439 B HOH 444 3 HOH HOH 444 B HOH 445 3 HOH HOH 445 B HOH 447 3 HOH HOH 447 B HOH 448 3 HOH HOH 448 B HOH 450 3 HOH HOH 450 B HOH 451 3 HOH HOH 451 B HOH 453 3 HOH HOH 453 B HOH 460 3 HOH HOH 460 B HOH 464 3 HOH HOH 464 B HOH 465 3 HOH HOH 465 B HOH 466 3 HOH HOH 466 B HOH 469 3 HOH HOH 469 B HOH 474 3 HOH HOH 474 B HOH 475 3 HOH HOH 475 B HOH 477 3 HOH HOH 477 B HOH 479 3 HOH HOH 479 B HOH 480 3 HOH HOH 480 B HOH 482 3 HOH HOH 482 B HOH 483 3 HOH HOH 483 B HOH 484 3 HOH HOH 484 B HOH 485 3 HOH HOH 485 B HOH 486 3 HOH HOH 486 B HOH 488 3 HOH HOH 488 B HOH 491 3 HOH HOH 491 B HOH 493 3 HOH HOH 493 B HOH 496 3 HOH HOH 496 B HOH 498 3 HOH HOH 498 B HOH 499 3 HOH HOH 499 B HOH 500 3 HOH HOH 500 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A VAL 3 n 3 VAL 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 101 n 1 PRO 1 B GLN 102 n 2 GLN 2 B VAL 103 n 3 VAL 3 B THR 104 n 4 THR 4 B LEU 105 n 5 LEU 5 B TRP 106 n 6 TRP 6 B GLN 107 n 7 GLN 7 B ARG 108 n 8 ARG 8 B PRO 109 n 9 PRO 9 B LEU 110 n 10 LEU 10 B VAL 111 n 11 VAL 11 B THR 112 n 12 THR 12 B ILE 113 n 13 ILE 13 B LYS 114 n 14 LYS 14 B ILE 115 n 15 ILE 15 B GLY 116 n 16 GLY 16 B GLY 117 n 17 GLY 17 B GLN 118 n 18 GLN 18 B LEU 119 n 19 LEU 19 B LYS 120 n 20 LYS 20 B GLU 121 n 21 GLU 21 B ALA 122 n 22 ALA 22 B LEU 123 n 23 LEU 23 B LEU 124 n 24 LEU 24 B ASP 125 n 25 ASP 25 B THR 126 n 26 THR 26 B GLY 127 n 27 GLY 27 B ALA 128 n 28 ALA 28 B ASP 129 n 29 ASP 29 B ASP 130 n 30 ASP 30 B THR 131 n 31 THR 31 B VAL 132 n 32 VAL 32 B LEU 133 n 33 LEU 33 B GLU 134 n 34 GLU 34 B GLU 135 n 35 GLU 35 B MET 136 n 36 MET 36 B SER 137 n 37 SER 37 B LEU 138 n 38 LEU 38 B PRO 139 n 39 PRO 39 B GLY 140 n 40 GLY 40 B ARG 141 n 41 ARG 41 B TRP 142 n 42 TRP 42 B LYS 143 n 43 LYS 43 B PRO 144 n 44 PRO 44 B LYS 145 n 45 LYS 45 B MET 146 n 46 MET 46 B ILE 147 n 47 ILE 47 B GLY 148 n 48 GLY 48 B GLY 149 n 49 GLY 49 B ILE 150 n 50 ILE 50 B GLY 151 n 51 GLY 51 B GLY 152 n 52 GLY 52 B PHE 153 n 53 PHE 53 B ILE 154 n 54 ILE 54 B LYS 155 n 55 LYS 55 B VAL 156 n 56 VAL 56 B ARG 157 n 57 ARG 57 B GLN 158 n 58 GLN 58 B TYR 159 n 59 TYR 59 B ASP 160 n 60 ASP 60 B GLN 161 n 61 GLN 61 B ILE 162 n 62 ILE 62 B LEU 163 n 63 LEU 63 B ILE 164 n 64 ILE 64 B GLU 165 n 65 GLU 65 B ILE 166 n 66 ILE 66 B CYS 167 n 67 CYS 67 B GLY 168 n 68 GLY 68 B HIS 169 n 69 HIS 69 B LYS 170 n 70 LYS 70 B ALA 171 n 71 ALA 71 B ILE 172 n 72 ILE 72 B GLY 173 n 73 GLY 73 B THR 174 n 74 THR 74 B VAL 175 n 75 VAL 75 B LEU 176 n 76 LEU 76 B VAL 177 n 77 VAL 77 B GLY 178 n 78 GLY 78 B PRO 179 n 79 PRO 79 B THR 180 n 80 THR 80 B PRO 181 n 81 PRO 81 B VAL 182 n 82 VAL 82 B ASN 183 n 83 ASN 83 B VAL 184 n 84 VAL 84 B ILE 185 n 85 ILE 85 B GLY 186 n 86 GLY 86 B ARG 187 n 87 ARG 87 B ASN 188 n 88 ASN 88 B LEU 189 n 89 LEU 89 B LEU 190 n 90 LEU 90 B THR 191 n 91 THR 91 B GLN 192 n 92 GLN 92 B ILE 193 n 93 ILE 93 B GLY 194 n 94 GLY 94 B CYS 195 n 95 CYS 95 B THR 196 n 96 THR 96 B LEU 197 n 97 LEU 97 B ASN 198 n 98 ASN 98 B PHE 199 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 5160 -32 8920 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 7.30 1.10 114.20 121.50 B B B CA CB SG CYS CYS CYS 67 67 67 N 1 A A CE2 CD2 TRP TRP 6 6 0.091 0.012 1.409 1.500 N 1 A A CE2 CD2 TRP TRP 42 42 0.090 0.012 1.409 1.499 N 1 B B CE2 CD2 TRP TRP 6 6 0.082 0.012 1.409 1.491 N 1 B B CE2 CD2 TRP TRP 42 42 0.083 0.012 1.409 1.492 N 1 B CYS 67 46.84 -128.43 0.198 0.198 2.0 20.0 13817 94 1 2 MOLECULAR REPLACEMENT 2.0 20.0 90 1982 54 0 1838 0.012 3.1 1.9 20.0 1BV9 13817 2 0.09 0.105 1 4 94 refinement X-PLOR HIV-1 PROTEASE (I84V) COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A GLY 94 A GLY 94 1 1 9 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 2 6 HYDROLASE HIV-1 PROTEASE (I84V) XV638, HYDROLASE POL_HV1H2 UNP 1 P04585 57 155 1BV9 1 99 P04585 A 1 1 99 57 155 1BV9 1 99 P04585 B 1 1 99 1 ILE engineered mutation VAL 84 1BV9 A P04585 UNP 140 84 2 ILE engineered mutation VAL 84 1BV9 B P04585 UNP 140 84 8 8 4 anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A GLY 78 A GLY 78 A THR 31 A THR 31 A GLU 34 A GLU 34 A ASN 83 A ASN 83 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A ASP 25 A ASP 25 A PRO 9 A PRO 9 A ILE 15 A ILE 15 A GLU 65 A GLU 65 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B GLY 78 B GLY 78 B THR 31 B THR 31 B GLU 34 B GLU 34 B ASN 83 B ASN 83 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B ASP 25 B ASP 25 B PRO 9 B PRO 9 B ILE 15 B ILE 15 B GLU 65 B GLU 65 B ILE 66 B ILE 66 A PRO 1 A PRO 1 A THR 4 A THR 4 B THR 96 B THR 96 B PHE 99 B PHE 99 A THR 96 A THR 96 A PHE 99 A PHE 99 B PRO 1 B PRO 1 B THR 4 B THR 4 BINDING SITE FOR RESIDUE XV6 A 638 A XV6 638 Software 23 A ASP 25 A ASP 25 23 1_555 A GLY 27 A GLY 27 23 1_555 A ALA 28 A ALA 28 23 1_555 A ASP 29 A ASP 29 23 1_555 A ASP 30 A ASP 30 23 1_555 A ILE 47 A ILE 47 23 1_555 A GLY 48 A GLY 48 23 1_555 A GLY 49 A GLY 49 23 1_555 A ILE 50 A ILE 50 23 1_555 A PRO 81 A PRO 81 23 1_555 A VAL 82 A VAL 82 23 1_555 A VAL 84 A VAL 84 23 1_555 B ARG 8 B ARG 8 23 1_555 B ASP 25 B ASP 25 23 1_555 B GLY 27 B GLY 27 23 1_555 B ALA 28 B ALA 28 23 1_555 B ASP 29 B ASP 29 23 1_555 B ASP 30 B ASP 30 23 1_555 B VAL 32 B VAL 32 23 1_555 B ILE 47 B ILE 47 23 1_555 B GLY 48 B GLY 48 23 1_555 B GLY 49 B GLY 49 23 1_555 B ILE 50 B ILE 50 23 1_555 169 P 61