1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Iwahara, J.
Kigawa, T.
Kitagawa, K.
Masumoto, H.
Okazaki, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
EMBO J.
EMJODG
0897
0261-4189
17
827
837
10.1093/emboj/17.3.827
9451007
A helix-turn-helix structure unit in human centromere protein B (CENP-B).
1998
10.2210/pdb1bw6/pdb
pdb_00001bw6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6546.627
PROTEIN (CENTROMERE PROTEIN B)
DNA-BINDING DOMAIN
1
man
polymer
no
no
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASE
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASE
A
my_001000013.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)/PLYSS
PRSETA
PHR1
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1998-10-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
BNL
Y
RCSB
1998-09-30
REL
ENERGY-MINIMIZED STRUCTURE. THE STRUCTRURE WAS DETERMINED USING TRIPLE-
RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED CENP-B DBD RP1.
80
1
400 mM NA2SO4
6.0
303
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
simulated annealing
BRUNGER
refinement
X-PLOR
3.1
structure solution
X-PLOR
500
Bruker
DMX-500
600
Bruker
AMX-600
MET
1
n
1
MET
1
A
GLY
2
n
2
GLY
2
A
PRO
3
n
3
PRO
3
A
LYS
4
n
4
LYS
4
A
ARG
5
n
5
ARG
5
A
ARG
6
n
6
ARG
6
A
GLN
7
n
7
GLN
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
PHE
10
n
10
PHE
10
A
ARG
11
n
11
ARG
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
SER
14
n
14
SER
14
A
ARG
15
n
15
ARG
15
A
ILE
16
n
16
ILE
16
A
ILE
17
n
17
ILE
17
A
GLN
18
n
18
GLN
18
A
GLU
19
n
19
GLU
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
GLU
22
n
22
GLU
22
A
ASN
23
n
23
ASN
23
A
PRO
24
n
24
PRO
24
A
ASP
25
n
25
ASP
25
A
LEU
26
n
26
LEU
26
A
ARG
27
n
27
ARG
27
A
LYS
28
n
28
LYS
28
A
GLY
29
n
29
GLY
29
A
GLU
30
n
30
GLU
30
A
ILE
31
n
31
ILE
31
A
ALA
32
n
32
ALA
32
A
ARG
33
n
33
ARG
33
A
ARG
34
n
34
ARG
34
A
PHE
35
n
35
PHE
35
A
ASN
36
n
36
ASN
36
A
ILE
37
n
37
ILE
37
A
PRO
38
n
38
PRO
38
A
PRO
39
n
39
PRO
39
A
SER
40
n
40
SER
40
A
THR
41
n
41
THR
41
A
LEU
42
n
42
LEU
42
A
SER
43
n
43
SER
43
A
THR
44
n
44
THR
44
A
ILE
45
n
45
ILE
45
A
LEU
46
n
46
LEU
46
A
LYS
47
n
47
LYS
47
A
ASN
48
n
48
ASN
48
A
LYS
49
n
49
LYS
49
A
ARG
50
n
50
ARG
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
LEU
53
n
53
LEU
53
A
ALA
54
n
54
ALA
54
A
SER
55
n
55
SER
55
A
GLU
56
n
56
GLU
56
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
5
0.300
SIDE CHAIN
1
A
ARG
6
0.287
SIDE CHAIN
1
A
ARG
11
0.151
SIDE CHAIN
1
A
ARG
15
0.305
SIDE CHAIN
1
A
ARG
27
0.288
SIDE CHAIN
1
A
ARG
33
0.211
SIDE CHAIN
1
A
ARG
34
0.317
SIDE CHAIN
1
A
ARG
50
0.299
SIDE CHAIN
1
A
PRO
3
-78.64
-103.33
1
A
ARG
5
-166.44
-56.85
1
A
ARG
6
-140.32
-52.84
1
A
ASN
36
-163.17
-100.13
1
A
PRO
38
-59.67
174.18
1
A
SER
40
-100.52
-60.51
HUMAN CENTROMERE PROTEIN B (CENP-B) DNA BINDIGN DOMAIN RP1
1
N
N
A
PHE
10
A
PHE
10
HELX_P
A
ASN
23
A
ASN
23
1
H1
14
A
LYS
28
A
LYS
28
HELX_P
A
PHE
35
A
PHE
35
1
H2
8
A
SER
40
A
SER
40
HELX_P
A
ASN
48
A
ASN
48
1
H3
9
A
LYS
49
A
LYS
49
HELX_P
A
ALA
54
A
ALA
54
1
H4
6
DNA BINDING PROTEIN
CENTROMERE PROTEIN, DNA-BINDING, HELIX-TURN-HELIX, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, DNA BINDING PROTEIN
CENPB_HUMAN
UNP
1
P07199
1
56
1BW6
1
56
P07199
A
1
1
56
1
P 1