0.015923
0.009193
0.000000
0.000000
0.018387
0.000000
0.000000
0.000000
0.011976
0.00000
0.00000
0.00000
Ala, P.
Chang, C.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
62.800
62.800
83.500
C49 H44 N8 O5
824.924
[4R-(4ALPHA,5ALPHA,6ALPHA,7ALPHA)]-3,3'-{{TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-DIYL]BIS(METHYLENE)]BIS[N-1H-BENZIMIDAZOL-2-YLBENZAMIDE]
SD146
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
N
3
R
C
N
4
S
C
N
5
S
C
N
6
R
C
N
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
N
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
N
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
Y
27
N
C
Y
28
N
C
N
29
N
C
Y
30
N
C
Y
31
N
C
Y
32
N
C
Y
33
N
C
Y
34
N
C
Y
35
N
C
Y
36
N
C
Y
37
N
C
Y
38
N
C
Y
39
N
C
Y
40
N
C
Y
41
N
C
N
42
N
C
Y
43
N
C
Y
44
N
C
Y
45
N
C
Y
46
N
C
Y
47
N
C
Y
48
N
C
Y
49
N
C
N
50
N
N
N
51
N
N
N
52
N
N
Y
53
N
N
Y
54
N
N
N
55
N
N
Y
56
N
N
Y
57
N
N
N
58
N
O
N
59
N
O
N
60
N
O
N
61
N
O
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
N
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
R
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
S
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
O
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
Y
248
N
C
Y
249
N
N
Y
250
N
C
Y
251
N
C
Y
252
N
N
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
S
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
N
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
S
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
N
384
N
C
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
R
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
N
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
N
465
N
O
N
466
N
O
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
N
N
479
S
C
N
480
N
C
N
481
N
O
N
482
N
C
N
483
N
C
N
484
N
C
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
doub
Y
26
N
sing
Y
27
N
sing
N
28
N
sing
Y
29
N
doub
N
30
N
sing
Y
31
N
sing
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
Y
39
N
sing
Y
40
N
doub
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
doub
N
45
N
sing
Y
46
N
sing
N
47
N
sing
Y
48
N
doub
N
49
N
sing
Y
50
N
sing
Y
51
N
sing
Y
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
Y
56
N
doub
Y
57
N
sing
Y
58
N
sing
N
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
N
63
N
sing
Y
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
Y
70
N
doub
Y
71
N
sing
Y
72
N
sing
N
73
N
sing
Y
74
N
doub
N
75
N
sing
Y
76
N
sing
N
77
N
sing
Y
78
N
doub
N
79
N
sing
N
80
N
sing
Y
81
N
doub
Y
82
N
sing
Y
83
N
sing
N
84
N
sing
Y
85
N
doub
N
86
N
sing
Y
87
N
sing
N
88
N
sing
Y
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
Y
95
N
doub
Y
96
N
sing
Y
97
N
doub
Y
98
N
sing
N
99
N
sing
Y
100
N
sing
N
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
Y
107
N
sing
Y
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
sing
Y
255
N
doub
Y
256
N
doub
N
257
N
sing
Y
258
N
sing
N
259
N
sing
Y
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
Y
459
N
doub
Y
460
N
sing
Y
461
N
sing
N
462
N
sing
Y
463
N
doub
N
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
doub
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
37
15042
15049
10.1021/bi980386e
9790666
Counteracting HIV-1 protease drug resistance: structural analysis of mutant proteases complexed with XV638 and SD146, cyclic urea amides with broad specificities.
1998
10.2210/pdb1bwb/pdb
pdb_00001bwb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
278
1
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
10823.746
PROTEIN (HIV-1 PROTEASE)
3.4.23.16
V82F, I84V
2
man
polymer
824.924
[4R-(4ALPHA,5ALPHA,6ALPHA,7ALPHA)]-3,3'-{{TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-DIYL]BIS(METHYLENE)]BIS[N-1H-BENZIMIDAZOL-2-YLBENZAMIDE]
1
syn
non-polymer
18.015
water
70
nat
water
no
no
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PFNVIGRNLLTQIGCTLNF
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PFNVIGRNLLTQIGCTLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
BH102
Escherichia
sample
11676
Human immunodeficiency virus 1
562
Escherichia coli
2.19
43.95
6.5
pH 6.5
struct_conf
struct_conf_type
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Derived calculations
Database references
Derived calculations
Data collection
1
0
1998-09-30
1
1
2007-10-21
1
2
2011-07-13
1
3
2017-11-29
1
4
2021-11-03
1
5
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
RCSB
1998-09-22
REL
146
[4R-(4ALPHA,5ALPHA,6ALPHA,7ALPHA)]-3,3'-{{TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-DIYL]BIS(METHYLENE)]BIS[N-1H-BENZIMIDAZOL-2-YLBENZAMIDE]
HOH
water
SD1
641
2
146
146
641
B
HOH
402
3
HOH
HOH
402
A
HOH
404
3
HOH
HOH
404
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
411
3
HOH
HOH
411
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
427
3
HOH
HOH
427
A
HOH
428
3
HOH
HOH
428
A
HOH
429
3
HOH
HOH
429
A
HOH
430
3
HOH
HOH
430
A
HOH
434
3
HOH
HOH
434
A
HOH
436
3
HOH
HOH
436
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
445
3
HOH
HOH
445
A
HOH
446
3
HOH
HOH
446
A
HOH
447
3
HOH
HOH
447
A
HOH
448
3
HOH
HOH
448
A
HOH
452
3
HOH
HOH
452
A
HOH
453
3
HOH
HOH
453
A
HOH
454
3
HOH
HOH
454
A
HOH
455
3
HOH
HOH
455
A
HOH
456
3
HOH
HOH
456
A
HOH
458
3
HOH
HOH
458
A
HOH
460
3
HOH
HOH
460
A
HOH
461
3
HOH
HOH
461
A
HOH
463
3
HOH
HOH
463
A
HOH
464
3
HOH
HOH
464
A
HOH
467
3
HOH
HOH
467
A
HOH
468
3
HOH
HOH
468
A
HOH
469
3
HOH
HOH
469
A
HOH
470
3
HOH
HOH
470
A
HOH
472
3
HOH
HOH
472
A
HOH
473
3
HOH
HOH
473
A
HOH
401
3
HOH
HOH
401
B
HOH
403
3
HOH
HOH
403
B
HOH
405
3
HOH
HOH
405
B
HOH
408
3
HOH
HOH
408
B
HOH
409
3
HOH
HOH
409
B
HOH
412
3
HOH
HOH
412
B
HOH
416
3
HOH
HOH
416
B
HOH
420
3
HOH
HOH
420
B
HOH
421
3
HOH
HOH
421
B
HOH
422
3
HOH
HOH
422
B
HOH
423
3
HOH
HOH
423
B
HOH
424
3
HOH
HOH
424
B
HOH
425
3
HOH
HOH
425
B
HOH
426
3
HOH
HOH
426
B
HOH
431
3
HOH
HOH
431
B
HOH
432
3
HOH
HOH
432
B
HOH
433
3
HOH
HOH
433
B
HOH
437
3
HOH
HOH
437
B
HOH
440
3
HOH
HOH
440
B
HOH
441
3
HOH
HOH
441
B
HOH
442
3
HOH
HOH
442
B
HOH
443
3
HOH
HOH
443
B
HOH
444
3
HOH
HOH
444
B
HOH
449
3
HOH
HOH
449
B
HOH
450
3
HOH
HOH
450
B
HOH
451
3
HOH
HOH
451
B
HOH
459
3
HOH
HOH
459
B
HOH
462
3
HOH
HOH
462
B
HOH
465
3
HOH
HOH
465
B
HOH
466
3
HOH
HOH
466
B
HOH
471
3
HOH
HOH
471
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
VAL
3
n
3
VAL
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
GLN
7
n
7
GLN
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
PHE
82
n
82
PHE
82
A
ASN
83
n
83
ASN
83
A
VAL
84
n
84
VAL
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
101
n
1
PRO
1
B
GLN
102
n
2
GLN
2
B
VAL
103
n
3
VAL
3
B
THR
104
n
4
THR
4
B
LEU
105
n
5
LEU
5
B
TRP
106
n
6
TRP
6
B
GLN
107
n
7
GLN
7
B
ARG
108
n
8
ARG
8
B
PRO
109
n
9
PRO
9
B
LEU
110
n
10
LEU
10
B
VAL
111
n
11
VAL
11
B
THR
112
n
12
THR
12
B
ILE
113
n
13
ILE
13
B
LYS
114
n
14
LYS
14
B
ILE
115
n
15
ILE
15
B
GLY
116
n
16
GLY
16
B
GLY
117
n
17
GLY
17
B
GLN
118
n
18
GLN
18
B
LEU
119
n
19
LEU
19
B
LYS
120
n
20
LYS
20
B
GLU
121
n
21
GLU
21
B
ALA
122
n
22
ALA
22
B
LEU
123
n
23
LEU
23
B
LEU
124
n
24
LEU
24
B
ASP
125
n
25
ASP
25
B
THR
126
n
26
THR
26
B
GLY
127
n
27
GLY
27
B
ALA
128
n
28
ALA
28
B
ASP
129
n
29
ASP
29
B
ASP
130
n
30
ASP
30
B
THR
131
n
31
THR
31
B
VAL
132
n
32
VAL
32
B
LEU
133
n
33
LEU
33
B
GLU
134
n
34
GLU
34
B
GLU
135
n
35
GLU
35
B
MET
136
n
36
MET
36
B
SER
137
n
37
SER
37
B
LEU
138
n
38
LEU
38
B
PRO
139
n
39
PRO
39
B
GLY
140
n
40
GLY
40
B
ARG
141
n
41
ARG
41
B
TRP
142
n
42
TRP
42
B
LYS
143
n
43
LYS
43
B
PRO
144
n
44
PRO
44
B
LYS
145
n
45
LYS
45
B
MET
146
n
46
MET
46
B
ILE
147
n
47
ILE
47
B
GLY
148
n
48
GLY
48
B
GLY
149
n
49
GLY
49
B
ILE
150
n
50
ILE
50
B
GLY
151
n
51
GLY
51
B
GLY
152
n
52
GLY
52
B
PHE
153
n
53
PHE
53
B
ILE
154
n
54
ILE
54
B
LYS
155
n
55
LYS
55
B
VAL
156
n
56
VAL
56
B
ARG
157
n
57
ARG
57
B
GLN
158
n
58
GLN
58
B
TYR
159
n
59
TYR
59
B
ASP
160
n
60
ASP
60
B
GLN
161
n
61
GLN
61
B
ILE
162
n
62
ILE
62
B
LEU
163
n
63
LEU
63
B
ILE
164
n
64
ILE
64
B
GLU
165
n
65
GLU
65
B
ILE
166
n
66
ILE
66
B
CYS
167
n
67
CYS
67
B
GLY
168
n
68
GLY
68
B
HIS
169
n
69
HIS
69
B
LYS
170
n
70
LYS
70
B
ALA
171
n
71
ALA
71
B
ILE
172
n
72
ILE
72
B
GLY
173
n
73
GLY
73
B
THR
174
n
74
THR
74
B
VAL
175
n
75
VAL
75
B
LEU
176
n
76
LEU
76
B
VAL
177
n
77
VAL
77
B
GLY
178
n
78
GLY
78
B
PRO
179
n
79
PRO
79
B
THR
180
n
80
THR
80
B
PRO
181
n
81
PRO
81
B
PHE
182
n
82
PHE
82
B
ASN
183
n
83
ASN
83
B
VAL
184
n
84
VAL
84
B
ILE
185
n
85
ILE
85
B
GLY
186
n
86
GLY
86
B
ARG
187
n
87
ARG
87
B
ASN
188
n
88
ASN
88
B
LEU
189
n
89
LEU
89
B
LEU
190
n
90
LEU
90
B
THR
191
n
91
THR
91
B
GLN
192
n
92
GLN
92
B
ILE
193
n
93
ILE
93
B
GLY
194
n
94
GLY
94
B
CYS
195
n
95
CYS
95
B
THR
196
n
96
THR
96
B
LEU
197
n
97
LEU
97
B
ASN
198
n
98
ASN
98
B
PHE
199
n
99
PHE
99
B
author_and_software_defined_assembly
PISA,PQS
2
dimeric
5240
-32
9090
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
5.50
0.50
120.30
125.80
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
87
87
87
N
1
-3.95
0.50
120.30
116.35
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
87
87
87
N
1
-3.34
0.50
120.30
116.96
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
N
1
-11.82
1.90
110.30
98.48
B
B
B
N
CA
CB
THR
THR
THR
91
91
91
N
1
A
A
CE2
CD2
TRP
TRP
6
6
0.083
0.012
1.409
1.492
N
1
A
A
CE2
CD2
TRP
TRP
42
42
0.079
0.012
1.409
1.488
N
1
B
B
CE2
CD2
TRP
TRP
6
6
0.084
0.012
1.409
1.493
N
1
B
B
CE2
CD2
TRP
TRP
42
42
0.087
0.012
1.409
1.496
N
1
A
B
OE1
HE21
GLN
GLN
61
92
1.44
1_555
4_565
1
A
B
HE22
O
GLN
GLN
61
92
1.59
1_555
4_565
1
A
CYS
67
50.19
-159.16
1
B
CYS
67
48.63
-137.76
0.199
0.199
1.8
20.0
17416
99
1
2
MOLECULAR REPLACEMENT
1.8
20.0
70
1650
62
0
1518
0.012
2.9
1.8
20.0
1BWB
17416
2
0.08
0.079
1
5
99
refinement
X-PLOR
HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH SD146 OF DUPONT PHARMACEUTICALS
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
2
6
HYDROLASE
HIV-1 PROTEASE, HYDROLASE
POL_HV1H2
UNP
1
P04585
57
155
1BWB
1
99
P04585
A
1
1
99
57
155
1BWB
1
99
P04585
B
1
1
99
1
VAL
engineered mutation
PHE
82
1BWB
A
P04585
UNP
138
82
1
ILE
engineered mutation
VAL
84
1BWB
A
P04585
UNP
140
84
2
VAL
engineered mutation
PHE
82
1BWB
B
P04585
UNP
138
82
2
ILE
engineered mutation
VAL
84
1BWB
B
P04585
UNP
140
84
8
8
4
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
GLY
78
A
GLY
78
A
THR
31
A
THR
31
A
GLU
34
A
GLU
34
A
ASN
83
A
ASN
83
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
ASP
25
A
ASP
25
A
PRO
9
A
PRO
9
A
ILE
15
A
ILE
15
A
GLU
65
A
GLU
65
A
ILE
66
A
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
GLY
78
B
GLY
78
B
THR
31
B
THR
31
B
GLU
34
B
GLU
34
B
ASN
83
B
ASN
83
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
ASP
25
B
ASP
25
B
PRO
9
B
PRO
9
B
ILE
15
B
ILE
15
B
GLU
65
B
GLU
65
B
ILE
66
B
ILE
66
A
PRO
1
A
PRO
1
A
THR
4
A
THR
4
B
THR
96
B
THR
96
B
PHE
99
B
PHE
99
A
THR
96
A
THR
96
A
PHE
99
A
PHE
99
B
PRO
1
B
PRO
1
B
THR
4
B
THR
4
BINDING SITE FOR RESIDUE 146 B 641
B
146
641
Software
26
A
ASP
25
A
ASP
25
26
1_555
A
GLY
27
A
GLY
27
26
1_555
A
ALA
28
A
ALA
28
26
1_555
A
ASP
29
A
ASP
29
26
1_555
A
ASP
30
A
ASP
30
26
1_555
A
VAL
32
A
VAL
32
26
1_555
A
LYS
45
A
LYS
45
26
1_555
A
ILE
47
A
ILE
47
26
1_555
A
GLY
48
A
GLY
48
26
1_555
A
GLY
49
A
GLY
49
26
1_555
A
ILE
50
A
ILE
50
26
1_555
A
PRO
81
A
PRO
81
26
6_555
A
PRO
81
A
PRO
81
26
1_555
A
VAL
84
A
VAL
84
26
1_555
B
ASP
25
B
ASP
25
26
1_555
B
GLY
27
B
GLY
27
26
1_555
B
ALA
28
B
ALA
28
26
1_555
B
ASP
29
B
ASP
29
26
1_555
B
ASP
30
B
ASP
30
26
1_555
B
VAL
32
B
VAL
32
26
1_555
B
MET
46
B
MET
46
26
1_555
B
ILE
47
B
ILE
47
26
1_555
B
GLY
48
B
GLY
48
26
1_555
B
GLY
49
B
GLY
49
26
1_555
B
ILE
50
B
ILE
50
26
1_555
B
VAL
84
B
VAL
84
26
1_555
169
P 61