1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Asensio, J.L.
Brown, T.
Lane, A.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Structure Fold.Des.
FODEFH
1263
0969-2126
7
1
11
10.1016/S0969-2126(99)80004-5
10368268
Solution conformation of a parallel DNA triple helix with 5' and 3' triplex-duplex junctions.
1999
US
Biochemistry
BICHAW
0033
0006-2960
36
14502
Solution Conformation of an Intramolecular DNA Triplex Containing a Nonnucleotide Linker: Comparison with the DNA Duplex
1997
10.2210/pdb1bwg/pdb
pdb_00001bwg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4353.854
DNA (5'-D(*GP*AP*CP*TP*GP*AP*GP*AP*GP*AP*CP*GP*TP*A)-3')
1
syn
polymer
4206.740
DNA (5'-D(*TP*AP*CP*GP*TP*CP*TP*CP*TP*CP*AP*GP*TP*C)-3')
1
syn
polymer
1735.166
DNA (5'-D(*CP*TP*CP*TP*CP*T)-3')
1
syn
polymer
no
no
(DG)(DA)(DC)(DT)(DG)(DA)(DG)(DA)(DG)(DA)(DC)(DG)(DT)(DA)
GACTGAGAGACGTA
A
polydeoxyribonucleotide
no
no
(DT)(DA)(DC)(DG)(DT)(DC)(DT)(DC)(DT)(DC)(DA)(DG)(DT)(DC)
TACGTCTCTCAGTC
B
polydeoxyribonucleotide
no
no
(DC)(DT)(DC)(DT)(DC)(DT)
CTCTCT
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1.219
1
19
A
1
B
14
-1.704
A_DG1:DC14_B
1
-9.837
-1.142
0.127
-0.348
-6.484
1
20
A
2
B
13
-0.979
A_DA2:DT13_B
2
-14.938
-0.199
-0.113
-0.019
-4.128
1
19
A
3
B
12
-4.252
A_DC3:DG12_B
3
-13.421
0.980
0.482
-0.418
-2.020
1
20
A
4
B
11
-2.757
A_DT4:DA11_B
4
-20.407
0.163
0.092
-0.059
19.766
1
19
A
5
B
10
-2.265
A_DG5:DC10_B
5
-10.340
0.007
0.492
0.036
10.732
1
20
A
6
B
9
0.588
A_DA6:DT9_B
6
-18.755
-0.349
0.570
-0.190
6.146
1
19
A
7
B
8
-4.394
A_DG7:DC8_B
7
-11.429
-1.101
0.075
-0.478
4.612
1
20
A
8
B
7
-1.078
A_DA8:DT7_B
8
-16.712
-0.333
0.468
-0.130
-3.163
1
19
A
9
B
6
-1.663
A_DG9:DC6_B
9
-18.447
-0.961
0.118
-0.327
-7.146
1
20
A
10
B
5
-5.885
A_DA10:DT5_B
10
-21.081
0.039
0.103
-0.031
-12.289
1
19
A
11
B
4
-3.870
A_DC11:DG4_B
11
-12.782
1.023
0.570
-0.408
4.783
1
19
A
12
B
3
-2.684
A_DG12:DC3_B
12
-17.287
0.477
0.404
-0.019
-7.749
1
20
A
13
B
2
-2.206
A_DT13:DA2_B
13
-25.364
0.140
0.246
-0.051
11.196
1
20
A
14
B
1
3.330
A_DA14:DT1_B
14
-7.260
-0.440
0.365
-0.111
3.275
35.585
A
A
1
2
3.220
B
B
14
13
3.358
1.965
-0.146
-1.082
AA_DG1DA2:DT13DC14_BB
1
2.760
-4.522
35.429
-2.061
0.648
3.140
45.058
A
A
2
3
-0.364
B
B
13
12
3.101
-0.278
-0.473
-0.617
AA_DA2DC3:DG12DT13_BB
2
-7.201
9.433
44.508
-0.781
-0.004
2.781
29.167
A
A
3
4
6.684
B
B
12
11
2.981
3.345
-0.269
-0.916
AA_DC3DT4:DA11DG12_BB
3
4.609
-9.209
28.617
-2.468
1.428
2.919
32.707
A
A
4
5
13.892
B
B
11
10
2.887
7.730
-0.357
0.386
AA_DT4DG5:DC10DA11_BB
4
-4.361
7.837
31.512
-0.524
-0.048
3.247
33.935
A
A
5
6
-2.423
B
B
10
9
3.215
-1.414
0.855
-1.091
AA_DG5DA6:DT9DC10_BB
5
-0.398
0.683
33.904
-1.645
-1.528
2.967
33.012
A
A
6
7
9.458
B
B
9
8
3.190
5.351
-0.100
-1.126
AA_DA6DG7:DC8DT9_BB
6
1.220
-2.157
32.565
-2.841
0.373
3.089
34.181
A
A
7
8
-3.120
B
B
8
7
3.104
-1.832
0.742
-0.965
AA_DG7DA8:DT7DC8_BB
7
-2.495
4.250
34.045
-1.367
-1.636
3.216
33.424
A
A
8
9
3.587
B
B
7
6
3.306
2.062
0.083
-1.364
AA_DA8DG9:DC6DT7_BB
8
-0.669
1.164
33.355
-2.712
-0.255
3.034
35.653
A
A
9
10
9.090
B
B
6
5
3.215
5.545
0.126
-0.952
AA_DG9DA10:DT5DC6_BB
9
-0.215
0.353
35.233
-2.328
-0.237
3.305
42.647
A
A
10
11
0.071
B
B
5
4
3.248
0.052
-0.661
-0.850
AA_DA10DC11:DG4DT5_BB
10
-5.757
7.938
42.275
-1.174
0.326
2.585
31.362
A
A
11
12
9.792
B
B
4
3
2.772
5.260
-0.376
-0.584
AA_DC11DG12:DC3DG4_BB
11
3.294
-6.132
30.757
-1.899
1.208
3.191
32.636
A
A
12
13
5.747
B
B
3
2
3.315
3.223
-0.056
-1.043
AA_DG12DT13:DA2DC3_BB
12
1.883
-3.357
32.428
-2.414
0.426
2.881
37.643
A
A
13
14
-1.963
B
B
2
1
2.776
-1.264
1.535
1.122
AA_DT13DA14:DT1DA2_BB
13
4.028
-6.255
37.414
1.882
-1.925
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1999-03-23
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
ENSEMBLE OF 10 STRUCTURES
ENSEMBLE OF 10 STRUCTURES
Y
BNL
1998-09-22
REL
REL
THE STRUCTURES WERE DETERMINED FROM NOE AND J-COUPLING DATA ON TWO INTRAMOLECULAR DNA TRIPLE HELICES CONTAINING IDENTICAL CORE SEGMENTS. THE RESTRAINTS WERE GENERATED FOR THE SUPERMOLECULE CONTAINING THE CORE TRIPLEX REGION AND THE 5' AND 3' DUPLEX EXTEN SIONS.
LEAST RESTRAINT VIOLATIONS
30
10
NOESY DQF-COSY
ROESY
13C-HSQC
0.1
5
1
atm
313
K
RESTRAINED MD
RESTRAINED MOLECULAR DYNAMICS
BIOSYM
refinement
Discover
structure solution
Discover
500
Varian
UNITYPLUS
600
Varian
UNITYPLUS
G
1
n
1
DG
1
A
A
2
n
2
DA
2
A
C
3
n
3
DC
3
A
T
4
n
4
DT
4
A
G
5
n
5
DG
5
A
A
6
n
6
DA
6
A
G
7
n
7
DG
7
A
A
8
n
8
DA
8
A
G
9
n
9
DG
9
A
A
10
n
10
DA
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
T
13
n
13
DT
13
A
A
14
n
14
DA
14
A
T
1
n
1
DT
1
B
A
2
n
2
DA
2
B
C
3
n
3
DC
3
B
G
4
n
4
DG
4
B
T
5
n
5
DT
5
B
C
6
n
6
DC
6
B
T
7
n
7
DT
7
B
C
8
n
8
DC
8
B
T
9
n
9
DT
9
B
C
10
n
10
DC
10
B
A
11
n
11
DA
11
B
G
12
n
12
DG
12
B
T
13
n
13
DT
13
B
C
14
n
14
DC
14
B
C
1
n
1
DC
1
C
T
2
n
2
DT
2
C
C
3
n
3
DC
3
C
T
4
n
4
DT
4
C
C
5
n
5
DC
5
C
T
6
n
6
DT
6
C
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
1.81
0.30
108.30
110.11
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
1.95
0.30
108.30
110.25
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
3.76
0.60
118.00
121.76
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
1
3.88
0.30
108.30
112.18
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
2.10
0.30
108.30
110.40
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
5.34
0.30
108.30
113.64
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
1.85
0.30
108.30
110.15
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
3.32
0.30
108.30
111.62
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
1
8.07
0.30
108.30
116.37
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
3.85
0.30
108.30
112.15
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
3.14
0.30
108.30
111.44
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
2.97
0.30
108.30
111.27
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
2.04
0.30
108.30
110.34
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
2.15
0.30
108.30
110.45
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
6.44
0.30
108.30
114.74
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
1
8.87
0.30
108.30
117.17
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
-6.15
0.60
122.90
116.75
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
1
2.80
0.30
108.30
111.10
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
-3.66
0.60
122.90
119.24
C
C
C
C6
C5
C7
DT
DT
DT
4
4
4
N
1
2.21
0.30
108.30
110.51
C
C
C
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
3.53
0.30
108.30
111.83
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
2
1.93
0.30
108.30
110.23
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
2
3.75
0.30
108.30
112.05
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
2
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
2
5.36
0.30
108.30
113.66
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
2
2.69
0.30
108.30
110.99
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
2
1.89
0.30
108.30
110.19
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
2
3.25
0.30
108.30
111.55
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
2
8.05
0.30
108.30
116.35
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
2
4.10
0.30
108.30
112.40
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
2
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
2
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
2
2.70
0.30
108.30
111.00
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
3.47
0.30
108.30
111.77
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
2
5.92
0.30
108.30
114.22
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
2
2.95
0.30
108.30
111.25
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
2
8.58
0.30
108.30
116.88
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
-5.59
0.60
122.90
117.31
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
2
2.67
0.30
108.30
110.97
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
2
-4.06
0.60
122.90
118.84
C
C
C
C6
C5
C7
DT
DT
DT
4
4
4
N
2
2.21
0.30
108.30
110.51
C
C
C
O4'
C1'
N1
DC
DC
DC
5
5
5
N
2
3.46
0.30
108.30
111.76
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
3
1.85
0.30
108.30
110.15
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
3
3.69
0.60
118.00
121.69
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
3
3.74
0.30
108.30
112.04
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
3
1.88
0.30
108.30
110.18
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
3
2.39
0.30
108.30
110.69
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
3
5.39
0.30
108.30
113.69
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
3
2.47
0.30
108.30
110.77
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
3
1.98
0.30
108.30
110.28
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
3
3.28
0.30
108.30
111.58
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
3
7.99
0.30
108.30
116.29
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
3
3.65
0.30
108.30
111.95
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
3
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N1
DT
DT
DT
5
5
5
N
3
3.09
0.30
108.30
111.39
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
3
2.74
0.30
108.30
111.04
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
2.28
0.30
108.30
110.58
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
3
5.56
0.30
108.30
113.86
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
3
2.89
0.30
108.30
111.19
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
3
8.63
0.30
108.30
116.93
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
3
-5.30
0.60
122.90
117.60
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
3
2.88
0.30
108.30
111.18
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
3
-4.02
0.60
122.90
118.88
C
C
C
C6
C5
C7
DT
DT
DT
4
4
4
N
3
1.81
0.30
108.30
110.11
C
C
C
O4'
C1'
N1
DC
DC
DC
5
5
5
N
3
3.43
0.30
108.30
111.73
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
4
2.02
0.30
108.30
110.32
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
4
3.68
0.60
118.00
121.68
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
4
3.94
0.30
108.30
112.24
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
4
2.32
0.30
108.30
110.62
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
4
4.42
0.30
108.30
112.72
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
4
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
4
3.22
0.30
108.30
111.52
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
4
8.06
0.30
108.30
116.36
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
4
3.81
0.30
108.30
112.11
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
4
2.65
0.30
108.30
110.95
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
4
2.54
0.30
108.30
110.84
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
4
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
4
5.69
0.30
108.30
113.99
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
4
2.98
0.30
108.30
111.28
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
4
8.55
0.30
108.30
116.85
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
-5.53
0.60
122.90
117.37
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
4
3.08
0.30
108.30
111.38
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
4
-4.13
0.60
122.90
118.77
C
C
C
C6
C5
C7
DT
DT
DT
4
4
4
N
4
2.67
0.30
108.30
110.97
C
C
C
O4'
C1'
N1
DC
DC
DC
5
5
5
N
4
3.46
0.30
108.30
111.76
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
5
1.83
0.30
108.30
110.13
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
5
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
5
3.75
0.60
118.00
121.75
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
5
3.64
0.30
108.30
111.94
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
5
2.28
0.30
108.30
110.58
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
5
5.25
0.30
108.30
113.55
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
5
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
5
1.98
0.30
108.30
110.28
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
5
3.31
0.30
108.30
111.61
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
5
8.02
0.30
108.30
116.32
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
5
3.62
0.30
108.30
111.92
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
5
2.72
0.30
108.30
111.02
B
B
B
O4'
C1'
N1
DT
DT
DT
5
5
5
N
5
3.28
0.30
108.30
111.58
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
5
2.70
0.30
108.30
111.00
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
2.08
0.30
108.30
110.38
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
5
6.38
0.30
108.30
114.68
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
5
2.85
0.30
108.30
111.15
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
5
8.79
0.30
108.30
117.09
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
5
-6.03
0.60
122.90
116.87
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
5
2.78
0.30
108.30
111.08
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
5
1.83
0.30
108.30
110.13
C
C
C
O4'
C1'
N1
DC
DC
DC
5
5
5
N
5
3.45
0.30
108.30
111.75
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
6
1.95
0.30
108.30
110.25
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
6
3.64
0.60
118.00
121.64
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
6
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
6
2.63
0.30
108.30
110.93
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
6
4.94
0.30
108.30
113.24
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
6
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
6
2.00
0.30
108.30
110.30
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
6
3.32
0.30
108.30
111.62
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
6
8.00
0.30
108.30
116.30
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
6
3.57
0.30
108.30
111.87
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
6
2.70
0.30
108.30
111.00
B
B
B
O4'
C1'
N1
DT
DT
DT
5
5
5
N
6
2.05
0.30
108.30
110.35
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
6
3.02
0.30
108.30
111.32
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
6
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
6
2.46
0.30
108.30
110.76
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
6
1.93
0.30
108.30
110.23
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
6
6.54
0.30
108.30
114.84
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
6
2.92
0.30
108.30
111.22
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
6
8.59
0.30
108.30
116.89
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
-5.61
0.60
122.90
117.29
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
6
2.72
0.30
108.30
111.02
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
6
-3.89
0.60
122.90
119.01
C
C
C
C6
C5
C7
DT
DT
DT
4
4
4
N
6
3.17
0.30
108.30
111.47
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
7
1.80
0.30
108.30
110.10
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
7
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
7
4.25
0.30
108.30
112.55
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
7
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
7
4.52
0.30
108.30
112.82
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
7
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
7
3.25
0.30
108.30
111.55
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
7
8.00
0.30
108.30
116.30
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
7
3.55
0.30
108.30
111.85
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
7
2.86
0.30
108.30
111.16
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
7
-3.61
0.60
122.90
119.29
B
B
B
C6
C5
C7
DT
DT
DT
5
5
5
N
7
3.22
0.30
108.30
111.52
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
7
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
7
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
7
3.48
0.30
108.30
111.78
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
7
6.68
0.30
108.30
114.98
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
7
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
7
8.73
0.30
108.30
117.03
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
-6.18
0.60
122.90
116.72
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
7
2.78
0.30
108.30
111.08
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
7
3.06
0.30
108.30
111.36
C
C
C
O4'
C1'
N1
DC
DC
DC
5
5
5
N
7
3.52
0.30
108.30
111.82
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
8
2.35
0.30
108.30
110.65
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
8
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
8
3.74
0.60
118.00
121.74
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
8
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
8
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
8
5.21
0.30
108.30
113.51
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
8
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
8
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
8
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
8
8.02
0.30
108.30
116.32
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
8
4.00
0.30
108.30
112.30
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
8
3.11
0.30
108.30
111.41
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
8
-3.70
0.60
122.90
119.20
B
B
B
C6
C5
C7
DT
DT
DT
5
5
5
N
8
2.82
0.30
108.30
111.12
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
8
2.59
0.30
108.30
110.89
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
8
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
8
3.45
0.30
108.30
111.75
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
8
3.22
0.30
108.30
111.52
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
8
8.80
0.30
108.30
117.10
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
8
-5.56
0.60
122.90
117.34
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
8
2.78
0.30
108.30
111.08
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
8
-4.17
0.60
122.90
118.73
C
C
C
C6
C5
C7
DT
DT
DT
4
4
4
N
8
3.44
0.30
108.30
111.74
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
9
1.96
0.30
108.30
110.26
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
9
3.70
0.60
118.00
121.70
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
9
5.30
0.30
108.30
113.60
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
9
3.49
0.30
108.30
111.79
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
9
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
9
4.71
0.30
108.30
113.01
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
9
2.57
0.30
108.30
110.87
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
9
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
9
3.25
0.30
108.30
111.55
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
9
8.06
0.30
108.30
116.36
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
9
4.07
0.30
108.30
112.37
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
9
2.98
0.30
108.30
111.28
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
9
3.01
0.30
108.30
111.31
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
9
2.69
0.30
108.30
110.99
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
9
2.11
0.30
108.30
110.41
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
9
6.42
0.30
108.30
114.72
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
9
2.85
0.30
108.30
111.15
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
9
8.89
0.30
108.30
117.19
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
9
-6.05
0.60
122.90
116.85
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
9
2.95
0.30
108.30
111.25
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
9
-3.83
0.60
122.90
119.07
C
C
C
C6
C5
C7
DT
DT
DT
4
4
4
N
9
3.24
0.30
108.30
111.54
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
10
1.80
0.30
108.30
110.10
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
10
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
10
3.78
0.60
118.00
121.78
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
10
3.17
0.30
108.30
111.47
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
10
2.28
0.30
108.30
110.58
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
10
5.41
0.30
108.30
113.71
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
10
2.37
0.30
108.30
110.67
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
10
1.90
0.30
108.30
110.20
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
10
3.27
0.30
108.30
111.57
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
10
8.03
0.30
108.30
116.33
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
10
3.92
0.30
108.30
112.22
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
10
3.16
0.30
108.30
111.46
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
10
3.02
0.30
108.30
111.32
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
10
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
10
2.23
0.30
108.30
110.53
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
10
6.40
0.30
108.30
114.70
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
10
2.90
0.30
108.30
111.20
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
10
8.85
0.30
108.30
117.15
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
10
-6.13
0.60
122.90
116.77
C
C
C
C6
C5
C7
DT
DT
DT
2
2
2
N
10
2.88
0.30
108.30
111.18
C
C
C
O4'
C1'
N1
DC
DC
DC
3
3
3
N
10
2.40
0.30
108.30
110.70
C
C
C
O4'
C1'
N1
DC
DC
DC
5
5
5
N
10
3.52
0.30
108.30
111.82
C
C
C
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
C
C
N3
C4
DC
DC
3
3
0.045
0.007
1.335
1.380
N
1
C
C
N3
C4
DC
DC
5
5
0.043
0.007
1.335
1.378
N
2
C
C
N3
C4
DC
DC
1
1
0.042
0.007
1.335
1.377
N
2
C
C
N3
C4
DC
DC
3
3
0.044
0.007
1.335
1.379
N
2
C
C
N3
C4
DC
DC
5
5
0.043
0.007
1.335
1.378
N
3
C
C
N3
C4
DC
DC
1
1
0.042
0.007
1.335
1.377
N
3
C
C
N3
C4
DC
DC
3
3
0.043
0.007
1.335
1.378
N
3
C
C
N3
C4
DC
DC
5
5
0.043
0.007
1.335
1.378
N
4
C
C
N3
C4
DC
DC
1
1
0.043
0.007
1.335
1.378
N
4
C
C
N3
C4
DC
DC
3
3
0.043
0.007
1.335
1.378
N
4
C
C
N3
C4
DC
DC
5
5
0.043
0.007
1.335
1.378
N
5
C
C
N3
C4
DC
DC
3
3
0.045
0.007
1.335
1.380
N
5
C
C
N3
C4
DC
DC
5
5
0.044
0.007
1.335
1.379
N
6
C
C
N3
C4
DC
DC
1
1
0.042
0.007
1.335
1.377
N
6
C
C
N3
C4
DC
DC
3
3
0.044
0.007
1.335
1.379
N
6
C
C
N3
C4
DC
DC
5
5
0.044
0.007
1.335
1.379
N
7
C
C
N3
C4
DC
DC
3
3
0.045
0.007
1.335
1.380
N
7
C
C
N3
C4
DC
DC
5
5
0.042
0.007
1.335
1.377
N
8
C
C
N3
C4
DC
DC
1
1
0.042
0.007
1.335
1.377
N
8
C
C
N3
C4
DC
DC
3
3
0.044
0.007
1.335
1.379
N
8
C
C
N3
C4
DC
DC
5
5
0.043
0.007
1.335
1.378
N
9
C
C
N3
C4
DC
DC
3
3
0.045
0.007
1.335
1.380
N
9
C
C
N3
C4
DC
DC
5
5
0.042
0.007
1.335
1.377
N
10
C
C
N3
C4
DC
DC
3
3
0.045
0.007
1.335
1.380
N
10
C
C
N3
C4
DC
DC
5
5
0.042
0.007
1.335
1.377
N
DNA TRIPLEX WITH 5' AND 3' JUNCTIONS, NMR, 10 STRUCTURES
1
N
N
2
N
N
3
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
14
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
14
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
14
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
DT
13
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
DT
13
B
O4
DT
13
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
12
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
12
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
12
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
11
B
N1
DA
11
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
11
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
10
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
10
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
10
B
N4
DC
10
1_555
hydrog
DG-DC PAIR
A
DG
5
A
O6
DG
5
1_555
C
DC
1
C
N4
DC
1
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
9
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
9
B
O4
DT
9
1_555
hydrog
HOOGSTEEN
A
DA
6
A
N6
DA
6
1_555
C
DT
2
C
O4
DT
2
1_555
hydrog
HOOGSTEEN
A
DA
6
A
N7
DA
6
1_555
C
DT
2
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
DC
8
B
N4
DC
8
1_555
hydrog
DG-DC PAIR
A
DG
7
A
O6
DG
7
1_555
C
DC
3
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
B
DT
7
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
B
DT
7
B
O4
DT
7
1_555
hydrog
HOOGSTEEN
A
DA
8
A
N6
DA
8
1_555
C
DT
4
C
O4
DT
4
1_555
hydrog
HOOGSTEEN
A
DA
8
A
N7
DA
8
1_555
C
DT
4
C
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
6
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
6
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
6
B
N4
DC
6
1_555
hydrog
DG-DC PAIR
A
DG
9
A
O6
DG
9
1_555
C
DC
5
C
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N1
DA
10
1_555
B
DT
5
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N6
DA
10
1_555
B
DT
5
B
O4
DT
5
1_555
hydrog
HOOGSTEEN
A
DA
10
A
N6
DA
10
1_555
C
DT
6
C
O4
DT
6
1_555
hydrog
HOOGSTEEN
A
DA
10
A
N7
DA
10
1_555
C
DT
6
C
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
3
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
3
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
3
B
N4
DC
3
1_555
hydrog
DT-DT MISPAIR
A
DT
13
A
O4
DT
13
1_555
B
DT
1
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
A
DT
13
A
N3
DT
13
1_555
B
DA
2
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
13
A
O4
DT
13
1_555
B
DA
2
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
A
DA
14
A
N1
DA
14
1_555
B
DT
1
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
A
DA
14
A
N6
DA
14
1_555
B
DT
1
B
O4
DT
1
1_555
hydrog
DC-DT MISPAIR
B
DC
8
B
N4
DC
8
1_555
C
DT
2
C
O4
DT
2
1_555
hydrog
DT-DC MISPAIR
B
DT
9
B
O4
DT
9
1_555
C
DC
1
C
N4
DC
1
1_555
DNA
DEOXYRIBONUCLEIC ACID, DNA TRIPLEX, TRIPLEX-DUPLEX JUNCTIONS, DNA
1BWG
PDB
1
1BWG
1BWG
PDB
2
1BWG
1BWG
PDB
3
1BWG
1
14
1BWG
1
14
1BWG
A
1
1
14
1
14
1BWG
1
14
1BWG
B
2
1
14
1
6
1BWG
1
6
1BWG
C
3
1
6
1
P 1