1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Aramini, J.M.
Mujeeb, A.
Germann, M.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
26
5644
5654
10.1093/nar/26.24.5644
9837995
NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control.
1998
10.2210/pdb1bwt/pdb
pdb_00001bwt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3045.005
DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*C)-3')
2
syn
polymer
no
no
(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)
GCGAATTCGC
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
-6.827
1
19
A
1
B
20
-0.945
A_DG1:DC20_B
1
-7.031
-0.360
-0.036
-0.206
-7.694
1
19
A
2
B
19
0.452
A_DC2:DG19_B
2
-0.038
0.370
0.071
-0.179
-0.389
1
19
A
3
B
18
0.099
A_DG3:DC18_B
3
-9.580
-0.323
-0.204
-0.207
-5.667
1
20
A
4
B
17
4.345
A_DA4:DT17_B
4
-6.913
-0.012
-0.283
-0.087
4.400
1
20
A
5
B
16
-1.369
A_DA5:DT16_B
5
-15.287
-0.020
-0.257
-0.156
0.042
1
20
A
6
B
15
0.469
A_DT6:DA15_B
6
-16.116
0.078
-0.307
-0.184
4.189
1
20
A
7
B
14
1.642
A_DT7:DA14_B
7
-11.073
0.126
-0.285
-0.125
-0.851
1
19
A
8
B
13
-0.299
A_DC8:DG13_B
8
-11.882
0.342
-0.158
-0.217
6.111
1
19
A
9
B
12
0.140
A_DG9:DC12_B
9
-0.687
-0.412
0.110
-0.196
5.118
1
19
A
10
B
11
-0.642
A_DC10:DG11_B
10
-7.341
0.404
0.050
-0.218
3.296
39.614
A
A
1
2
2.445
B
B
20
19
3.329
1.657
-0.172
-0.805
AA_DG1DC2:DG19DC20_BB
1
-0.369
0.544
39.579
-1.384
0.210
3.183
28.776
A
A
2
3
8.895
B
B
19
18
3.206
4.403
0.347
0.021
AA_DC2DG3:DC18DG19_BB
2
1.028
-2.077
28.426
-0.927
-0.471
3.295
36.764
A
A
3
4
8.863
B
B
18
17
3.404
5.570
0.192
-0.487
AA_DG3DA4:DT17DC18_BB
3
-0.105
0.167
36.354
-1.554
-0.319
3.233
39.997
A
A
4
5
-8.328
B
B
17
16
3.260
-5.679
-0.984
0.087
AA_DA4DA5:DT16DT17_BB
4
-0.675
0.990
39.603
0.778
1.361
3.591
34.410
A
A
5
6
-12.586
B
B
16
15
3.513
-7.391
0.149
-0.738
AA_DA5DT6:DA15DT16_BB
5
0.254
-0.433
33.629
0.019
-0.209
3.338
39.737
A
A
6
7
-2.900
B
B
15
14
3.315
-1.970
0.486
-0.110
AA_DT6DT7:DA14DA15_BB
6
2.196
-3.234
39.631
0.072
-0.455
3.330
36.891
A
A
7
8
6.836
B
B
14
13
3.385
4.316
-0.050
-0.298
AA_DT7DC8:DG13DA14_BB
7
-0.047
0.075
36.647
-1.073
0.072
3.163
28.364
A
A
8
9
8.391
B
B
13
12
3.174
4.096
-0.325
0.066
AA_DC8DG9:DC12DG13_BB
8
-1.332
2.729
28.042
-0.786
0.365
3.306
40.975
A
A
9
10
1.825
B
B
12
11
3.329
1.278
0.226
-0.736
AA_DG9DC10:DG11DC12_BB
9
0.250
-0.358
40.955
-1.193
-0.295
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
1999-01-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
BNL
Y
RCSB
1998-09-28
REL
REL
MEAN STRUCTURE. THE STRUCTURE WAS DETERMINED USING DISTANCE AND TORSION ANGLE
RESTRAINTS OBTAINED FROM HOMONUCLEAR NOESY (125, 250 MS MIXING TIMES) AND DQF-
COSY EXPERIMENTS.
9
1
NOESY
DQF-COSY
50 mM NACL, 10 mM NAPHOSPHATE, 0.1 mM EDTA
6.5
1
atm
303
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE
simulated annealing
PEARLMAN ET AL., 1995
refinement
Amber
4.1
structure solution
RAMDMARDI
structure solution
Amber
4.1
600
Bruker
AMX600
G
1
n
1
DG
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
A
4
n
4
DA
4
A
A
5
n
5
DA
5
A
T
6
n
6
DT
6
A
T
7
n
7
DT
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
C
10
n
10
DC
10
A
G
11
n
1
DG
11
B
C
12
n
2
DC
12
B
G
13
n
3
DG
13
B
A
14
n
4
DA
14
B
A
15
n
5
DA
15
B
T
16
n
6
DT
16
B
T
17
n
7
DT
17
B
C
18
n
8
DC
18
B
G
19
n
9
DG
19
B
C
20
n
10
DC
20
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
2
0.069
SIDE CHAIN
1
A
DT
7
0.074
SIDE CHAIN
1
A
DC
10
0.060
SIDE CHAIN
1
B
DC
12
0.067
SIDE CHAIN
1
B
DT
17
0.072
SIDE CHAIN
1
B
DC
20
0.063
SIDE CHAIN
1
3.25
0.30
108.30
111.55
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
6.48
0.30
108.30
114.78
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
4.46
0.60
106.00
110.46
A
A
A
O4'
C4'
C3'
DA
DA
DA
4
4
4
N
1
-4.22
0.60
118.60
114.38
A
A
A
N1
C6
N6
DA
DA
DA
4
4
4
N
1
3.95
0.60
106.00
109.95
A
A
A
O4'
C4'
C3'
DA
DA
DA
5
5
5
N
1
3.80
0.30
108.30
112.10
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
4.07
0.60
106.00
110.07
A
A
A
O4'
C4'
C3'
DC
DC
DC
8
8
8
N
1
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N1
DC
DC
DC
10
10
10
N
1
3.45
0.30
108.30
111.75
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
7.19
0.30
108.30
115.49
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
4.19
0.60
106.00
110.19
B
B
B
O4'
C4'
C3'
DA
DA
DA
14
14
14
N
1
2.97
0.30
108.30
111.27
B
B
B
O4'
C1'
N9
DA
DA
DA
14
14
14
N
1
5.03
0.60
106.00
111.03
B
B
B
O4'
C4'
C3'
DA
DA
DA
15
15
15
N
1
3.78
0.30
108.30
112.08
B
B
B
O4'
C1'
N1
DT
DT
DT
16
16
16
N
1
3.98
0.60
106.00
109.98
B
B
B
O4'
C4'
C3'
DC
DC
DC
18
18
18
N
1
2.20
0.30
108.30
110.50
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
3.74
0.60
106.00
109.74
B
B
B
O4'
C4'
C3'
DG
DG
DG
19
19
19
N
NMR SOLUTION STRUCTURE OF [D(GCGAATCGC)2]
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
20
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
20
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
20
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
18
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
18
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
18
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
17
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
17
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
16
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
16
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
15
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
15
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
14
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
14
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
13
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
13
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
13
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
12
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
12
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
12
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
B
DG
11
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
B
DG
11
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
B
DG
11
B
N2
DG
1
1_555
DNA
ECORI RECOGNITION SITE, DNA
1BWT
PDB
1
1BWT
1
10
1BWT
1
10
1BWT
A
1
1
10
11
20
1BWT
11
20
1BWT
B
1
1
10
1
P 1