1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Aramini, J.M. Mujeeb, A. Germann, M.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 26 5644 5654 10.1093/nar/26.24.5644 9837995 NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control. 1998 10.2210/pdb1bwt/pdb pdb_00001bwt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3045.005 DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*C)-3') 2 syn polymer no no (DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC) GCGAATTCGC A,B polydeoxyribonucleotide n n n n n n n n n n -6.827 1 19 A 1 B 20 -0.945 A_DG1:DC20_B 1 -7.031 -0.360 -0.036 -0.206 -7.694 1 19 A 2 B 19 0.452 A_DC2:DG19_B 2 -0.038 0.370 0.071 -0.179 -0.389 1 19 A 3 B 18 0.099 A_DG3:DC18_B 3 -9.580 -0.323 -0.204 -0.207 -5.667 1 20 A 4 B 17 4.345 A_DA4:DT17_B 4 -6.913 -0.012 -0.283 -0.087 4.400 1 20 A 5 B 16 -1.369 A_DA5:DT16_B 5 -15.287 -0.020 -0.257 -0.156 0.042 1 20 A 6 B 15 0.469 A_DT6:DA15_B 6 -16.116 0.078 -0.307 -0.184 4.189 1 20 A 7 B 14 1.642 A_DT7:DA14_B 7 -11.073 0.126 -0.285 -0.125 -0.851 1 19 A 8 B 13 -0.299 A_DC8:DG13_B 8 -11.882 0.342 -0.158 -0.217 6.111 1 19 A 9 B 12 0.140 A_DG9:DC12_B 9 -0.687 -0.412 0.110 -0.196 5.118 1 19 A 10 B 11 -0.642 A_DC10:DG11_B 10 -7.341 0.404 0.050 -0.218 3.296 39.614 A A 1 2 2.445 B B 20 19 3.329 1.657 -0.172 -0.805 AA_DG1DC2:DG19DC20_BB 1 -0.369 0.544 39.579 -1.384 0.210 3.183 28.776 A A 2 3 8.895 B B 19 18 3.206 4.403 0.347 0.021 AA_DC2DG3:DC18DG19_BB 2 1.028 -2.077 28.426 -0.927 -0.471 3.295 36.764 A A 3 4 8.863 B B 18 17 3.404 5.570 0.192 -0.487 AA_DG3DA4:DT17DC18_BB 3 -0.105 0.167 36.354 -1.554 -0.319 3.233 39.997 A A 4 5 -8.328 B B 17 16 3.260 -5.679 -0.984 0.087 AA_DA4DA5:DT16DT17_BB 4 -0.675 0.990 39.603 0.778 1.361 3.591 34.410 A A 5 6 -12.586 B B 16 15 3.513 -7.391 0.149 -0.738 AA_DA5DT6:DA15DT16_BB 5 0.254 -0.433 33.629 0.019 -0.209 3.338 39.737 A A 6 7 -2.900 B B 15 14 3.315 -1.970 0.486 -0.110 AA_DT6DT7:DA14DA15_BB 6 2.196 -3.234 39.631 0.072 -0.455 3.330 36.891 A A 7 8 6.836 B B 14 13 3.385 4.316 -0.050 -0.298 AA_DT7DC8:DG13DA14_BB 7 -0.047 0.075 36.647 -1.073 0.072 3.163 28.364 A A 8 9 8.391 B B 13 12 3.174 4.096 -0.325 0.066 AA_DC8DG9:DC12DG13_BB 8 -1.332 2.729 28.042 -0.786 0.365 3.306 40.975 A A 9 10 1.825 B B 12 11 3.329 1.278 0.226 -0.736 AA_DG9DC10:DG11DC12_BB 9 0.250 -0.358 40.955 -1.193 -0.295 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1999-01-06 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name BNL Y RCSB 1998-09-28 REL REL MEAN STRUCTURE. THE STRUCTURE WAS DETERMINED USING DISTANCE AND TORSION ANGLE RESTRAINTS OBTAINED FROM HOMONUCLEAR NOESY (125, 250 MS MIXING TIMES) AND DQF- COSY EXPERIMENTS. 9 1 NOESY DQF-COSY 50 mM NACL, 10 mM NAPHOSPHATE, 0.1 mM EDTA 6.5 1 atm 303 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE simulated annealing PEARLMAN ET AL., 1995 refinement Amber 4.1 structure solution RAMDMARDI structure solution Amber 4.1 600 Bruker AMX600 G 1 n 1 DG 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A A 5 n 5 DA 5 A T 6 n 6 DT 6 A T 7 n 7 DT 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A G 11 n 1 DG 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B A 14 n 4 DA 14 B A 15 n 5 DA 15 B T 16 n 6 DT 16 B T 17 n 7 DT 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B C 20 n 10 DC 20 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DC 2 0.069 SIDE CHAIN 1 A DT 7 0.074 SIDE CHAIN 1 A DC 10 0.060 SIDE CHAIN 1 B DC 12 0.067 SIDE CHAIN 1 B DT 17 0.072 SIDE CHAIN 1 B DC 20 0.063 SIDE CHAIN 1 3.25 0.30 108.30 111.55 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 6.48 0.30 108.30 114.78 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 4.46 0.60 106.00 110.46 A A A O4' C4' C3' DA DA DA 4 4 4 N 1 -4.22 0.60 118.60 114.38 A A A N1 C6 N6 DA DA DA 4 4 4 N 1 3.95 0.60 106.00 109.95 A A A O4' C4' C3' DA DA DA 5 5 5 N 1 3.80 0.30 108.30 112.10 A A A O4' C1' N1 DT DT DT 6 6 6 N 1 4.07 0.60 106.00 110.07 A A A O4' C4' C3' DC DC DC 8 8 8 N 1 1.87 0.30 108.30 110.17 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 1.91 0.30 108.30 110.21 A A A O4' C1' N1 DC DC DC 10 10 10 N 1 3.45 0.30 108.30 111.75 B B B O4' C1' N9 DG DG DG 11 11 11 N 1 7.19 0.30 108.30 115.49 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 4.19 0.60 106.00 110.19 B B B O4' C4' C3' DA DA DA 14 14 14 N 1 2.97 0.30 108.30 111.27 B B B O4' C1' N9 DA DA DA 14 14 14 N 1 5.03 0.60 106.00 111.03 B B B O4' C4' C3' DA DA DA 15 15 15 N 1 3.78 0.30 108.30 112.08 B B B O4' C1' N1 DT DT DT 16 16 16 N 1 3.98 0.60 106.00 109.98 B B B O4' C4' C3' DC DC DC 18 18 18 N 1 2.20 0.30 108.30 110.50 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 3.74 0.60 106.00 109.74 B B B O4' C4' C3' DG DG DG 19 19 19 N NMR SOLUTION STRUCTURE OF [D(GCGAATCGC)2] 1 N N 1 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 20 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 20 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 20 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 17 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 17 B O4 DT 7 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 16 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 16 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 15 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 15 B N6 DA 5 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 14 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 14 B N6 DA 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 11 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 11 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 11 B N2 DG 1 1_555 DNA ECORI RECOGNITION SITE, DNA 1BWT PDB 1 1BWT 1 10 1BWT 1 10 1BWT A 1 1 10 11 20 1BWT 11 20 1BWT B 1 1 10 1 P 1