0.009794 0.000000 0.000000 0.000000 0.008665 0.000000 0.000000 0.000000 0.015083 0.00000 0.00000 0.00000 Cirilli, M. Zheng, R. Scapin, G. Blanchard, J.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 102.100 115.400 66.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 37 16452 16458 10.1021/bi982138o 9843410 Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase. 1998 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 288 1 AREA DETECTOR SIEMENS GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 30295.584 PROTEIN (DIAMINOPIMELATE EPIMERASE) 5.1.1.7 1 man polymer 18.015 water 29 nat water DAP EPIMERASE E.C.5.1.1.7 ISOMERASE no no MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCF ARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHC VVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQV DLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCF ARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHC VVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQV DLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Haemophilus Escherichia Escherichia coli sample DAPF 727 Haemophilus influenzae DAPF 469008 Escherichia coli BL21(DE3) BL21(DE3) PET 23A(+) 3.2 62 6.5 pH 6.5 software repository Initial release Version format compliance Version format compliance Refinement description 1 0 1998-12-16 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 BNL Y RCSB 1998-09-29 REL REL HOH water HOH 501 2 HOH HOH 501 A HOH 502 2 HOH HOH 502 A HOH 503 2 HOH HOH 503 A HOH 504 2 HOH HOH 504 A HOH 505 2 HOH HOH 505 A HOH 506 2 HOH HOH 506 A HOH 507 2 HOH HOH 507 A HOH 508 2 HOH HOH 508 A HOH 509 2 HOH HOH 509 A HOH 510 2 HOH HOH 510 A HOH 511 2 HOH HOH 511 A HOH 512 2 HOH HOH 512 A HOH 514 2 HOH HOH 514 A HOH 515 2 HOH HOH 515 A HOH 516 2 HOH HOH 516 A HOH 517 2 HOH HOH 517 A HOH 518 2 HOH HOH 518 A HOH 519 2 HOH HOH 519 A HOH 520 2 HOH HOH 520 A HOH 521 2 HOH HOH 521 A HOH 522 2 HOH HOH 522 A HOH 523 2 HOH HOH 523 A HOH 524 2 HOH HOH 524 A HOH 525 2 HOH HOH 525 A HOH 526 2 HOH HOH 526 A HOH 527 2 HOH HOH 527 A HOH 528 2 HOH HOH 528 A HOH 530 2 HOH HOH 530 A HOH 531 2 HOH HOH 531 A MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A PHE 3 n 3 PHE 3 A SER 4 n 4 SER 4 A LYS 5 n 5 LYS 5 A MET 6 n 6 MET 6 A HIS 7 n 7 HIS 7 A GLY 8 n 8 GLY 8 A LEU 9 n 9 LEU 9 A GLY 10 n 10 GLY 10 A ASN 11 n 11 ASN 11 A ASP 12 n 12 ASP 12 A PHE 13 n 13 PHE 13 A VAL 14 n 14 VAL 14 A VAL 15 n 15 VAL 15 A VAL 16 n 16 VAL 16 A ASP 17 n 17 ASP 17 A GLY 18 n 18 GLY 18 A VAL 19 n 19 VAL 19 A THR 20 n 20 THR 20 A GLN 21 n 21 GLN 21 A ASN 22 n 22 ASN 22 A VAL 23 n 23 VAL 23 A PHE 24 n 24 PHE 24 A PHE 25 n 25 PHE 25 A THR 26 n 26 THR 26 A PRO 27 n 27 PRO 27 A GLU 28 n 28 GLU 28 A THR 29 n 29 THR 29 A ILE 30 n 30 ILE 30 A ARG 31 n 31 ARG 31 A ARG 32 n 32 ARG 32 A LEU 33 n 33 LEU 33 A ALA 34 n 34 ALA 34 A ASN 35 n 35 ASN 35 A ARG 36 n 36 ARG 36 A HIS 37 n 37 HIS 37 A CYS 38 n 38 CYS 38 A GLY 39 n 39 GLY 39 A ILE 40 n 40 ILE 40 A GLY 41 n 41 GLY 41 A PHE 42 n 42 PHE 42 A ASP 43 n 43 ASP 43 A GLN 44 n 44 GLN 44 A LEU 45 n 45 LEU 45 A LEU 46 n 46 LEU 46 A ILE 47 n 47 ILE 47 A VAL 48 n 48 VAL 48 A GLU 49 n 49 GLU 49 A ALA 50 n 50 ALA 50 A PRO 51 n 51 PRO 51 A TYR 52 n 52 TYR 52 A ASP 53 n 53 ASP 53 A PRO 54 n 54 PRO 54 A GLU 55 n 55 GLU 55 A LEU 56 n 56 LEU 56 A ASP 57 n 57 ASP 57 A PHE 58 n 58 PHE 58 A HIS 59 n 59 HIS 59 A TYR 60 n 60 TYR 60 A ARG 61 n 61 ARG 61 A ILE 62 n 62 ILE 62 A PHE 63 n 63 PHE 63 A ASN 64 n 64 ASN 64 A ALA 65 n 65 ALA 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A SER 68 n 68 SER 68 A GLU 69 n 69 GLU 69 A VAL 70 n 70 VAL 70 A SER 71 n 71 SER 71 A GLN 72 n 72 GLN 72 A CYS 73 n 73 CYS 73 A GLY 74 n 74 GLY 74 A ASN 75 n 75 ASN 75 A GLY 76 n 76 GLY 76 A ALA 77 n 77 ALA 77 A ARG 78 n 78 ARG 78 A CYS 79 n 79 CYS 79 A PHE 80 n 80 PHE 80 A ALA 81 n 81 ALA 81 A ARG 82 n 82 ARG 82 A PHE 83 n 83 PHE 83 A VAL 84 n 84 VAL 84 A THR 85 n 85 THR 85 A LEU 86 n 86 LEU 86 A LYS 87 n 87 LYS 87 A GLY 88 n 88 GLY 88 A LEU 89 n 89 LEU 89 A THR 90 n 90 THR 90 A ASN 91 n 91 ASN 91 A LYS 92 n 92 LYS 92 A LYS 93 n 93 LYS 93 A ASP 94 n 94 ASP 94 A ILE 95 n 95 ILE 95 A SER 96 n 96 SER 96 A VAL 97 n 97 VAL 97 A SER 98 n 98 SER 98 A THR 99 n 99 THR 99 A GLN 100 n 100 GLN 100 A LYS 101 n 101 LYS 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A MET 104 n 104 MET 104 A VAL 105 n 105 VAL 105 A LEU 106 n 106 LEU 106 A THR 107 n 107 THR 107 A VAL 108 n 108 VAL 108 A LYS 109 n 109 LYS 109 A ASP 110 n 110 ASP 110 A MET 111 n 111 MET 111 A ASN 112 n 112 ASN 112 A GLN 113 n 113 GLN 113 A ILE 114 n 114 ILE 114 A ARG 115 n 115 ARG 115 A VAL 116 n 116 VAL 116 A ASN 117 n 117 ASN 117 A MET 118 n 118 MET 118 A GLY 119 n 119 GLY 119 A GLU 120 n 120 GLU 120 A PRO 121 n 121 PRO 121 A ILE 122 n 122 ILE 122 A TRP 123 n 123 TRP 123 A GLU 124 n 124 GLU 124 A PRO 125 n 125 PRO 125 A ALA 126 n 126 ALA 126 A LYS 127 n 127 LYS 127 A ILE 128 n 128 ILE 128 A PRO 129 n 129 PRO 129 A PHE 130 n 130 PHE 130 A THR 131 n 131 THR 131 A ALA 132 n 132 ALA 132 A ASN 133 n 133 ASN 133 A LYS 134 n 134 LYS 134 A PHE 135 n 135 PHE 135 A GLU 136 n 136 GLU 136 A LYS 137 n 137 LYS 137 A ASN 138 n 138 ASN 138 A TYR 139 n 139 TYR 139 A ILE 140 n 140 ILE 140 A LEU 141 n 141 LEU 141 A ARG 142 n 142 ARG 142 A THR 143 n 143 THR 143 A ASP 144 n 144 ASP 144 A ILE 145 n 145 ILE 145 A GLN 146 n 146 GLN 146 A THR 147 n 147 THR 147 A VAL 148 n 148 VAL 148 A LEU 149 n 149 LEU 149 A CYS 150 n 150 CYS 150 A GLY 151 n 151 GLY 151 A ALA 152 n 152 ALA 152 A VAL 153 n 153 VAL 153 A SER 154 n 154 SER 154 A MET 155 n 155 MET 155 A GLY 156 n 156 GLY 156 A ASN 157 n 157 ASN 157 A PRO 158 n 158 PRO 158 A HIS 159 n 159 HIS 159 A CYS 160 n 160 CYS 160 A VAL 161 n 161 VAL 161 A VAL 162 n 162 VAL 162 A GLN 163 n 163 GLN 163 A VAL 164 n 164 VAL 164 A ASP 165 n 165 ASP 165 A ASP 166 n 166 ASP 166 A ILE 167 n 167 ILE 167 A GLN 168 n 168 GLN 168 A THR 169 n 169 THR 169 A ALA 170 n 170 ALA 170 A ASN 171 n 171 ASN 171 A VAL 172 n 172 VAL 172 A GLU 173 n 173 GLU 173 A GLN 174 n 174 GLN 174 A LEU 175 n 175 LEU 175 A GLY 176 n 176 GLY 176 A PRO 177 n 177 PRO 177 A LEU 178 n 178 LEU 178 A LEU 179 n 179 LEU 179 A GLU 180 n 180 GLU 180 A SER 181 n 181 SER 181 A HIS 182 n 182 HIS 182 A GLU 183 n 183 GLU 183 A ARG 184 n 184 ARG 184 A PHE 185 n 185 PHE 185 A PRO 186 n 186 PRO 186 A GLU 187 n 187 GLU 187 A ARG 188 n 188 ARG 188 A VAL 189 n 189 VAL 189 A ASN 190 n 190 ASN 190 A ALA 191 n 191 ALA 191 A GLY 192 n 192 GLY 192 A PHE 193 n 193 PHE 193 A MET 194 n 194 MET 194 A GLN 195 n 195 GLN 195 A ILE 196 n 196 ILE 196 A ILE 197 n 197 ILE 197 A ASN 198 n 198 ASN 198 A LYS 199 n 199 LYS 199 A GLU 200 n 200 GLU 200 A HIS 201 n 201 HIS 201 A ILE 202 n 202 ILE 202 A LYS 203 n 203 LYS 203 A LEU 204 n 204 LEU 204 A ARG 205 n 205 ARG 205 A VAL 206 n 206 VAL 206 A TYR 207 n 207 TYR 207 A GLU 208 n 208 GLU 208 A ARG 209 n 209 ARG 209 A GLY 210 n 210 GLY 210 A ALA 211 n 211 ALA 211 A GLY 212 n 212 GLY 212 A GLU 213 n 213 GLU 213 A THR 214 n 214 THR 214 A GLN 215 n 215 GLN 215 A ALA 216 n 216 ALA 216 A CYS 217 n 217 CYS 217 A GLY 218 n 218 GLY 218 A SER 219 n 219 SER 219 A GLY 220 n 220 GLY 220 A ALA 221 n 221 ALA 221 A CYS 222 n 222 CYS 222 A ALA 223 n 223 ALA 223 A ALA 224 n 224 ALA 224 A VAL 225 n 225 VAL 225 A ALA 226 n 226 ALA 226 A VAL 227 n 227 VAL 227 A GLY 228 n 228 GLY 228 A ILE 229 n 229 ILE 229 A MET 230 n 230 MET 230 A GLN 231 n 231 GLN 231 A GLY 232 n 232 GLY 232 A LEU 233 n 233 LEU 233 A LEU 234 n 234 LEU 234 A ASN 235 n 235 ASN 235 A ASN 236 n 236 ASN 236 A ASN 237 n 237 ASN 237 A VAL 238 n 238 VAL 238 A GLN 239 n 239 GLN 239 A VAL 240 n 240 VAL 240 A ASP 241 n 241 ASP 241 A LEU 242 n 242 LEU 242 A PRO 243 n 243 PRO 243 A GLY 244 n 244 GLY 244 A GLY 245 n 245 GLY 245 A SER 246 n 246 SER 246 A LEU 247 n 247 LEU 247 A MET 248 n 248 MET 248 A ILE 249 n 249 ILE 249 A GLU 250 n 250 GLU 250 A TRP 251 n 251 TRP 251 A ASN 252 n 252 ASN 252 A GLY 253 n 253 GLY 253 A VAL 254 n 254 VAL 254 A GLY 255 n 255 GLY 255 A HIS 256 n 256 HIS 256 A PRO 257 n 257 PRO 257 A LEU 258 n 258 LEU 258 A TYR 259 n 259 TYR 259 A MET 260 n 260 MET 260 A THR 261 n 261 THR 261 A GLY 262 n 262 GLY 262 A GLU 263 n 263 GLU 263 A ALA 264 n 264 ALA 264 A THR 265 n 265 THR 265 A HIS 266 n 266 HIS 266 A ILE 267 n 267 ILE 267 A TYR 268 n 268 TYR 268 A ASP 269 n 269 ASP 269 A GLY 270 n 270 GLY 270 A PHE 271 n 271 PHE 271 A ILE 272 n 272 ILE 272 A ALA 273 n 273 THR 273 A ALA 274 n 274 LEU 274 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O HIS 59 A O HIS 59 A N GLU 49 A N GLU 49 A O GLN 44 A O GLN 44 A N VAL 14 A N VAL 14 A O ASN 11 A O ASN 11 A N GLY 8 A N GLY 8 A O PHE 3 A O PHE 3 A N GLY 270 A N GLY 270 A O ILE 95 A O ILE 95 A N LEU 106 A N LEU 106 A O VAL 105 A O VAL 105 A N ASN 117 A N ASN 117 A O ILE 114 A O ILE 114 A N GLY 262 A N GLY 262 A O TYR 259 A O TYR 259 A N GLU 250 A N GLU 250 A O LEU 247 A O LEU 247 A N VAL 240 A N VAL 240 A O GLN 239 A O GLN 239 A N ILE 202 A N ILE 202 A O HIS 201 A O HIS 201 A N ASN 198 A N ASN 198 A O ASN 190 A O ASN 190 A N CYS 160 A N CYS 160 A O HIS 159 A O HIS 159 A N VAL 153 A N VAL 153 A O TYR 139 A O TYR 139 A N CYS 150 A N CYS 150 1 A OG1 THR 273 A OG1 THR 273 1 Y 1 A CG2 THR 273 A CG2 THR 273 1 Y 1 A CG LEU 274 A CG LEU 274 1 Y 1 A CD1 LEU 274 A CD1 LEU 274 1 Y 1 A CD2 LEU 274 A CD2 LEU 274 1 Y 1 A ASN 22 -86.87 44.67 1 A PHE 24 -166.50 115.76 1 A ASP 53 -167.34 114.44 1 A SER 71 -172.37 72.09 1 A GLN 146 175.82 157.72 1 A ASN 171 -67.60 63.67 1 A SER 181 -106.62 61.92 1 A ARG 188 60.93 -174.34 1 A ALA 211 -132.29 -47.73 1 A ASN 237 68.63 89.25 1 A ILE 267 -94.79 -60.20 PARAM19X.PR TOPH19X.PRO 37.65 0.242 0.19 0.19 2.72 23.79 9411 7 86.8 RANDOM 1 THROUGHOUT 2.0 MIR 2.72 23.79 29 2146 0 0 2117 0.004 0.825 28.59 2.72 23.79 1BWZ 9691 2 0.061 1 11.61 3.4 89.4 2.72 2.83 10.89 0.061 1.6 51.6 data scaling X-GEN data reduction X-GEN refinement X-PLOR 3.851 PROTEIN (DIAMINOPIMELATE EPIMERASE) (5.1.1.7) DIAMINOPIMELATE EPIMERASE FROM HEMOPHILUS INFLUENZAE 1 N N 2 N N A PRO 27 A PRO 27 HELX_P A ALA 34 A ALA 34 1 1 8 A ALA 77 A ALA 77 HELX_P A LEU 86 A LEU 86 1 2 10 A PRO 125 A PRO 125 HELX_P A LYS 127 A LYS 127 5 3 3 A VAL 172 A VAL 172 HELX_P A GLU 180 A GLU 180 1 4 9 A GLY 218 A GLY 218 HELX_P A MET 230 A MET 230 1 5 13 disulf 2.029 A CYS 73 A SG CYS 73 1_555 A CYS 217 A SG CYS 217 1_555 ISOMERASE METABOLIC ROLE, STRUCTURAL CLASSIFICATION, ISOMERASE A ILE 128 A ILE 128 1 A PRO 129 A PRO 129 -0.41 DAPF_HAEIN UNP 1 P44859 1 274 1BWZ 1 274 P44859 A 1 1 274 1 ASP CONFLICT MET 111 1BWZ A P44859 UNP 111 111 5 10 2 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A HIS 59 A HIS 59 A ASN 64 A ASN 64 A GLN 44 A GLN 44 A GLU 49 A GLU 49 A ASN 11 A ASN 11 A ASP 17 A ASP 17 A GLN 2 A GLN 2 A GLY 8 A GLY 8 A THR 265 A THR 265 A PHE 271 A PHE 271 A ASP 94 A ASP 94 A SER 98 A SER 98 A ASN 103 A ASN 103 A VAL 108 A VAL 108 A ILE 114 A ILE 114 A ASN 117 A ASN 117 A TYR 259 A TYR 259 A GLY 262 A GLY 262 A SER 246 A SER 246 A GLU 250 A GLU 250 A VAL 238 A VAL 238 A ASP 241 A ASP 241 A HIS 201 A HIS 201 A TYR 207 A TYR 207 A ASN 190 A ASN 190 A ASN 198 A ASN 198 A PRO 158 A PRO 158 A GLN 163 A GLN 163 A GLY 151 A GLY 151 A SER 154 A SER 154 A TYR 139 A TYR 139 A THR 143 A THR 143 A GLN 146 A GLN 146 A CYS 150 A CYS 150 20 C 2 2 21