1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Sattler, M.
Liang, H.
Nettesheim, D.
Meadows, R.P.
Harlan, J.E.
Eberstadt, M.
Yoon, H.
Shuker, S.B.
Chang, B.S.
Minn, A.J.
Thompson, C.B.
Fesik, S.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Science
SCIEAS
0038
0036-8075
275
983
986
10.1126/science.275.5302.983
9020082
Structure of Bcl-xL-Bak peptide complex: recognition between regulators of apoptosis.
1997
10.2210/pdb1bxl/pdb
pdb_00001bxl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
24879.371
BCL-XL
1
man
polymer
1726.934
BAK PEPTIDE
RESIDUES 572 - 587 OF BAK PROTEIN
1
man
polymer
no
no
MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLD
AREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVD
KEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERLEHHHHHH
MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLD
AREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVD
KEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERLEHHHHHH
A
polypeptide(L)
no
no
GQVGRQLAIIGDDINR
GQVGRQLAIIGDDINR
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
HMS174 (DE3)
Escherichia
sample
562
Escherichia coli
HUMAN BCL-XL, RESIDUES 1-44, 85-205, DELETION MUTANT LACKING A FLEXIBLE LOOP (RESIDUES 45-84) AND THE C-TERMINAL HYDROPHOBIC REGION, WITH A C-TERMINAL HIS-TAG
562
Escherichia coli
PET29B
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-10-29
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1996-10-16
REL
NMR SPECTRA WERE RECORDED ON 1-3 MM SOLUTIONS OF BCL-XL COMPLEXED WITH A BAK PEPTIDE IN 10 MM SODIUM PHOSPHATE BUFFER (PH 6.5) AT 303K.
1
303
K
BRUNGER
refinement
X-PLOR
MET
-3
n
1
MET
-3
A
SER
-2
n
2
SER
-2
A
MET
-1
n
3
MET
-1
A
ALA
0
n
4
ALA
0
A
MET
1
n
5
MET
1
A
SER
2
n
6
SER
2
A
GLN
3
n
7
GLN
3
A
SER
4
n
8
SER
4
A
ASN
5
n
9
ASN
5
A
ARG
6
n
10
ARG
6
A
GLU
7
n
11
GLU
7
A
LEU
8
n
12
LEU
8
A
VAL
9
n
13
VAL
9
A
VAL
10
n
14
VAL
10
A
ASP
11
n
15
ASP
11
A
PHE
12
n
16
PHE
12
A
LEU
13
n
17
LEU
13
A
SER
14
n
18
SER
14
A
TYR
15
n
19
TYR
15
A
LYS
16
n
20
LYS
16
A
LEU
17
n
21
LEU
17
A
SER
18
n
22
SER
18
A
GLN
19
n
23
GLN
19
A
LYS
20
n
24
LYS
20
A
GLY
21
n
25
GLY
21
A
TYR
22
n
26
TYR
22
A
SER
23
n
27
SER
23
A
TRP
24
n
28
TRP
24
A
SER
25
n
29
SER
25
A
GLN
26
n
30
GLN
26
A
PHE
27
n
31
PHE
27
A
SER
28
n
32
SER
28
A
ASP
29
n
33
ASP
29
A
VAL
30
n
34
VAL
30
A
GLU
31
n
35
GLU
31
A
GLU
32
n
36
GLU
32
A
ASN
33
n
37
ASN
33
A
ARG
34
n
38
ARG
34
A
THR
35
n
39
THR
35
A
GLU
36
n
40
GLU
36
A
ALA
37
n
41
ALA
37
A
PRO
38
n
42
PRO
38
A
GLU
39
n
43
GLU
39
A
GLY
40
n
44
GLY
40
A
THR
41
n
45
THR
41
A
GLU
42
n
46
GLU
42
A
SER
43
n
47
SER
43
A
GLU
44
n
48
GLU
44
A
n
49
45
A
n
50
46
A
n
51
47
A
n
52
48
A
n
53
49
A
n
54
50
A
n
55
51
A
n
56
52
A
n
57
53
A
n
58
54
A
n
59
55
A
n
60
56
A
n
61
57
A
n
62
58
A
n
63
59
A
n
64
60
A
n
65
61
A
n
66
62
A
n
67
63
A
n
68
64
A
n
69
65
A
n
70
66
A
n
71
67
A
n
72
68
A
n
73
69
A
n
74
70
A
n
75
71
A
n
76
72
A
n
77
73
A
n
78
74
A
n
79
75
A
n
80
76
A
n
81
77
A
n
82
78
A
n
83
79
A
n
84
80
A
n
85
81
A
n
86
82
A
n
87
83
A
n
88
84
A
ALA
85
n
89
ALA
85
A
VAL
86
n
90
VAL
86
A
LYS
87
n
91
LYS
87
A
GLN
88
n
92
GLN
88
A
ALA
89
n
93
ALA
89
A
LEU
90
n
94
LEU
90
A
ARG
91
n
95
ARG
91
A
GLU
92
n
96
GLU
92
A
ALA
93
n
97
ALA
93
A
GLY
94
n
98
GLY
94
A
ASP
95
n
99
ASP
95
A
GLU
96
n
100
GLU
96
A
PHE
97
n
101
PHE
97
A
GLU
98
n
102
GLU
98
A
LEU
99
n
103
LEU
99
A
ARG
100
n
104
ARG
100
A
TYR
101
n
105
TYR
101
A
ARG
102
n
106
ARG
102
A
ARG
103
n
107
ARG
103
A
ALA
104
n
108
ALA
104
A
PHE
105
n
109
PHE
105
A
SER
106
n
110
SER
106
A
ASP
107
n
111
ASP
107
A
LEU
108
n
112
LEU
108
A
THR
109
n
113
THR
109
A
SER
110
n
114
SER
110
A
GLN
111
n
115
GLN
111
A
LEU
112
n
116
LEU
112
A
HIS
113
n
117
HIS
113
A
ILE
114
n
118
ILE
114
A
THR
115
n
119
THR
115
A
PRO
116
n
120
PRO
116
A
GLY
117
n
121
GLY
117
A
THR
118
n
122
THR
118
A
ALA
119
n
123
ALA
119
A
TYR
120
n
124
TYR
120
A
GLN
121
n
125
GLN
121
A
SER
122
n
126
SER
122
A
PHE
123
n
127
PHE
123
A
GLU
124
n
128
GLU
124
A
GLN
125
n
129
GLN
125
A
VAL
126
n
130
VAL
126
A
VAL
127
n
131
VAL
127
A
ASN
128
n
132
ASN
128
A
GLU
129
n
133
GLU
129
A
LEU
130
n
134
LEU
130
A
PHE
131
n
135
PHE
131
A
ARG
132
n
136
ARG
132
A
ASP
133
n
137
ASP
133
A
GLY
134
n
138
GLY
134
A
VAL
135
n
139
VAL
135
A
ASN
136
n
140
ASN
136
A
TRP
137
n
141
TRP
137
A
GLY
138
n
142
GLY
138
A
ARG
139
n
143
ARG
139
A
ILE
140
n
144
ILE
140
A
VAL
141
n
145
VAL
141
A
ALA
142
n
146
ALA
142
A
PHE
143
n
147
PHE
143
A
PHE
144
n
148
PHE
144
A
SER
145
n
149
SER
145
A
PHE
146
n
150
PHE
146
A
GLY
147
n
151
GLY
147
A
GLY
148
n
152
GLY
148
A
ALA
149
n
153
ALA
149
A
LEU
150
n
154
LEU
150
A
CYS
151
n
155
CYS
151
A
VAL
152
n
156
VAL
152
A
GLU
153
n
157
GLU
153
A
SER
154
n
158
SER
154
A
VAL
155
n
159
VAL
155
A
ASP
156
n
160
ASP
156
A
LYS
157
n
161
LYS
157
A
GLU
158
n
162
GLU
158
A
MET
159
n
163
MET
159
A
GLN
160
n
164
GLN
160
A
VAL
161
n
165
VAL
161
A
LEU
162
n
166
LEU
162
A
VAL
163
n
167
VAL
163
A
SER
164
n
168
SER
164
A
ARG
165
n
169
ARG
165
A
ILE
166
n
170
ILE
166
A
ALA
167
n
171
ALA
167
A
ALA
168
n
172
ALA
168
A
TRP
169
n
173
TRP
169
A
MET
170
n
174
MET
170
A
ALA
171
n
175
ALA
171
A
THR
172
n
176
THR
172
A
TYR
173
n
177
TYR
173
A
LEU
174
n
178
LEU
174
A
ASN
175
n
179
ASN
175
A
ASP
176
n
180
ASP
176
A
HIS
177
n
181
HIS
177
A
LEU
178
n
182
LEU
178
A
GLU
179
n
183
GLU
179
A
PRO
180
n
184
PRO
180
A
TRP
181
n
185
TRP
181
A
ILE
182
n
186
ILE
182
A
GLN
183
n
187
GLN
183
A
GLU
184
n
188
GLU
184
A
ASN
185
n
189
ASN
185
A
GLY
186
n
190
GLY
186
A
GLY
187
n
191
GLY
187
A
TRP
188
n
192
TRP
188
A
ASP
189
n
193
ASP
189
A
THR
190
n
194
THR
190
A
PHE
191
n
195
PHE
191
A
VAL
192
n
196
VAL
192
A
GLU
193
n
197
GLU
193
A
LEU
194
n
198
LEU
194
A
TYR
195
n
199
TYR
195
A
GLY
196
n
200
GLY
196
A
ASN
197
n
201
ASN
197
A
ASN
198
n
202
ASN
198
A
ALA
199
n
203
ALA
199
A
ALA
200
n
204
ALA
200
A
ALA
201
n
205
ALA
201
A
GLU
202
n
206
GLU
202
A
SER
203
n
207
SER
203
A
ARG
204
n
208
ARG
204
A
LYS
205
n
209
LYS
205
A
GLY
206
n
210
GLY
206
A
GLN
207
n
211
GLN
207
A
GLU
208
n
212
GLU
208
A
ARG
209
n
213
ARG
209
A
LEU
210
n
214
LEU
210
A
GLU
211
n
215
GLU
211
A
HIS
212
n
216
HIS
212
A
HIS
213
n
217
HIS
213
A
HIS
214
n
218
HIS
214
A
HIS
215
n
219
HIS
215
A
HIS
216
n
220
HIS
216
A
HIS
217
n
221
HIS
217
A
GLY
572
n
1
GLY
572
B
GLN
573
n
2
GLN
573
B
VAL
574
n
3
VAL
574
B
GLY
575
n
4
GLY
575
B
ARG
576
n
5
ARG
576
B
GLN
577
n
6
GLN
577
B
LEU
578
n
7
LEU
578
B
ALA
579
n
8
ALA
579
B
ILE
580
n
9
ILE
580
B
ILE
581
n
10
ILE
581
B
GLY
582
n
11
GLY
582
B
ASP
583
n
12
ASP
583
B
ASP
584
n
13
ASP
584
B
ILE
585
n
14
ILE
585
B
ASN
586
n
15
ASN
586
B
ARG
587
n
16
ARG
587
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
45
A
MET
49
1
Y
1
A
GLU
46
A
GLU
50
1
Y
1
A
THR
47
A
THR
51
1
Y
1
A
PRO
48
A
PRO
52
1
Y
1
A
SER
49
A
SER
53
1
Y
1
A
ALA
50
A
ALA
54
1
Y
1
A
ILE
51
A
ILE
55
1
Y
1
A
ASN
52
A
ASN
56
1
Y
1
A
GLY
53
A
GLY
57
1
Y
1
A
ASN
54
A
ASN
58
1
Y
1
A
PRO
55
A
PRO
59
1
Y
1
A
SER
56
A
SER
60
1
Y
1
A
TRP
57
A
TRP
61
1
Y
1
A
HIS
58
A
HIS
62
1
Y
1
A
LEU
59
A
LEU
63
1
Y
1
A
ALA
60
A
ALA
64
1
Y
1
A
ASP
61
A
ASP
65
1
Y
1
A
SER
62
A
SER
66
1
Y
1
A
PRO
63
A
PRO
67
1
Y
1
A
ALA
64
A
ALA
68
1
Y
1
A
VAL
65
A
VAL
69
1
Y
1
A
ASN
66
A
ASN
70
1
Y
1
A
GLY
67
A
GLY
71
1
Y
1
A
ALA
68
A
ALA
72
1
Y
1
A
THR
69
A
THR
73
1
Y
1
A
GLY
70
A
GLY
74
1
Y
1
A
HIS
71
A
HIS
75
1
Y
1
A
SER
72
A
SER
76
1
Y
1
A
SER
73
A
SER
77
1
Y
1
A
SER
74
A
SER
78
1
Y
1
A
LEU
75
A
LEU
79
1
Y
1
A
ASP
76
A
ASP
80
1
Y
1
A
ALA
77
A
ALA
81
1
Y
1
A
ARG
78
A
ARG
82
1
Y
1
A
GLU
79
A
GLU
83
1
Y
1
A
VAL
80
A
VAL
84
1
Y
1
A
ILE
81
A
ILE
85
1
Y
1
A
PRO
82
A
PRO
86
1
Y
1
A
MET
83
A
MET
87
1
Y
1
A
ALA
84
A
ALA
88
1
Y
1
A
ARG
6
0.253
SIDE CHAIN
1
A
ARG
34
0.317
SIDE CHAIN
1
A
ARG
91
0.307
SIDE CHAIN
1
A
ARG
100
0.225
SIDE CHAIN
1
A
ARG
102
0.317
SIDE CHAIN
1
A
ARG
103
0.311
SIDE CHAIN
1
A
ARG
132
0.215
SIDE CHAIN
1
A
ARG
139
0.317
SIDE CHAIN
1
A
ARG
165
0.233
SIDE CHAIN
1
A
ARG
204
0.288
SIDE CHAIN
1
A
ARG
209
0.314
SIDE CHAIN
1
B
ARG
576
0.252
SIDE CHAIN
1
B
ARG
587
0.289
SIDE CHAIN
1
A
SER
-2
-68.64
-179.96
1
A
MET
-1
175.91
-36.93
1
A
ALA
0
-166.28
37.94
1
A
LYS
20
-55.72
-76.04
1
A
GLU
32
-62.29
-159.66
1
A
ASN
33
66.94
77.46
1
A
GLU
36
80.83
-34.74
1
A
ALA
37
67.41
162.57
1
A
GLU
39
-177.08
-38.80
1
A
GLU
44
-57.25
-78.06
1
A
PHE
105
-152.21
-73.41
1
A
SER
106
-178.08
-163.17
1
A
LEU
108
-100.45
-64.33
1
A
ILE
114
65.03
135.35
1
A
THR
115
173.93
148.17
1
A
PHE
131
-63.09
96.74
1
A
ASP
133
-160.14
-44.35
1
A
ASP
176
-122.47
-70.40
1
A
ASN
185
-142.18
54.81
1
A
GLU
208
57.88
-83.73
1
A
ARG
209
-39.36
-90.26
1
A
HIS
212
172.71
-31.36
1
A
HIS
213
4.01
109.84
1
A
HIS
215
-152.89
23.40
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
STRUCTURE OF BCL-XL/BAK PEPTIDE COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
1
N
N
2
N
N
A
GLN
3
A
GLN
7
HELX_P
A
LYS
20
A
LYS
24
1
1
18
A
SER
25
A
SER
29
HELX_P
A
PHE
27
A
PHE
31
5
2
3
A
GLU
42
A
GLU
46
HELX_P
A
ALA
104
A
ALA
108
1
3
23
A
ALA
119
A
ALA
123
HELX_P
A
LEU
130
A
LEU
134
1
4
12
A
ARG
139
A
ARG
143
HELX_P
A
LYS
157
A
LYS
161
1
5
19
A
GLN
160
A
GLN
164
HELX_P
A
ASP
176
A
ASP
180
1
6
17
A
GLU
179
A
GLU
183
HELX_P
A
ASN
185
A
ASN
189
1
7
7
A
GLY
187
A
GLY
191
HELX_P
A
LEU
194
A
LEU
198
1
8
8
A
ALA
199
A
ALA
203
HELX_P
A
ARG
204
A
ARG
208
1
9
6
B
ARG
576
B
ARG
5
HELX_P
B
ASP
584
B
ASP
13
1
10
9
COMPLEX (APOPTOSIS/PEPTIDE)
APOPTOSIS, ALTERNATIVE SPLICING, COMPLEX (APOPTOSIS-PEPTIDE), COMPLEX (APOPTOSIS-PEPTIDE) complex
BCLX_HUMAN
UNP
1
1
Q07817
BAK_HUMAN
UNP
2
72
Q16611
1
209
1BXL
1
209
Q07817
A
1
5
213
72
87
1BXL
572
587
Q16611
B
2
1
16
1
P 1