0.023202
0.000000
0.000000
0.000000
0.023202
0.000000
0.000000
0.000000
0.017575
0.00000
0.00000
0.00000
Inoue, T.
Sugawara, H.
Hamanaka, S.
Tsukui, H.
Suzuki, E.
Kohzuma, T.
Kai, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
43.100
43.100
56.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
38
6063
6069
10.1021/bi9824442
10320332
Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942.
1999
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
55
683
Crystallization and Preliminary X-Ray Analysis of Plastocyanin from Cyanobacterium Synechococcus Sp. Pcc 7942
1999
10.2210/pdb1bxu/pdb
pdb_00001bxu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
300
1
DIFFRACTOMETER
1997-12
WEISSENBERG
SI(111)
M
x-ray
1
1.0
1.0
BL-6A
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
REDUCED FORM
9861.011
PLASTOCYANIN
1
man
polymer
63.546
COPPER (II) ION
1
syn
non-polymer
18.015
water
82
nat
water
no
no
QTVAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVEGQPELSHKDLAFSPGETFEATFSEPGTYTYYCEPHR
GAGMVGKIVVQ
QTVAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVEGQPELSHKDLAFSPGETFEATFSEPGTYTYYCEPHR
GAGMVGKIVVQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Synechococcus
Synechococcus elongatus
PCC 7942
Escherichia
sample
1140
Synechococcus elongatus
562
Escherichia coli
1
2.7
54.5
5.3
pH 5.3
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Database references
Derived calculations
Other
Refinement description
1
0
1999-06-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-10-09
REL
REL
CU
COPPER (II) ION
HOH
water
1IUZ
PDB ENTRY 1IUZ
PDB
experimental model
CU
200
2
CU
CU
200
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
GLN
-2
n
1
GLN
-2
A
THR
-1
n
2
THR
-1
A
VAL
1
n
3
VAL
1
A
ALA
2
n
4
ALA
2
A
ILE
3
n
5
ILE
3
A
LYS
4
n
6
LYS
4
A
MET
5
n
7
MET
5
A
GLY
6
n
8
GLY
6
A
ALA
7
n
9
ALA
7
A
ASP
8
n
10
ASP
8
A
ASN
9
n
11
ASN
9
A
GLY
10
n
12
GLY
10
A
MET
11
n
13
MET
11
A
LEU
12
n
14
LEU
12
A
ALA
13
n
15
ALA
13
A
PHE
14
n
16
PHE
14
A
GLU
15
n
17
GLU
15
A
PRO
16
n
18
PRO
16
A
SER
17
n
19
SER
17
A
THR
18
n
20
THR
18
A
ILE
19
n
21
ILE
19
A
GLU
20
n
22
GLU
20
A
ILE
21
n
23
ILE
21
A
GLN
22
n
24
GLN
22
A
ALA
23
n
25
ALA
23
A
GLY
24
n
26
GLY
24
A
ASP
25
n
27
ASP
25
A
THR
26
n
28
THR
26
A
VAL
27
n
29
VAL
27
A
GLN
28
n
30
GLN
28
A
TRP
29
n
31
TRP
29
A
VAL
30
n
32
VAL
30
A
ASN
31
n
33
ASN
31
A
ASN
32
n
34
ASN
32
A
LYS
33
n
35
LYS
33
A
LEU
34
n
36
LEU
34
A
ALA
35
n
37
ALA
35
A
PRO
36
n
38
PRO
36
A
HIS
37
n
39
HIS
37
A
ASN
38
n
40
ASN
38
A
VAL
39
n
41
VAL
39
A
VAL
40
n
42
VAL
40
A
VAL
41
n
43
VAL
41
A
GLU
42
n
44
GLU
42
A
GLY
49
n
45
GLY
49
A
GLN
52
n
46
GLN
52
A
PRO
53
n
47
PRO
53
A
GLU
54
n
48
GLU
54
A
LEU
55
n
49
LEU
55
A
SER
56
n
50
SER
56
A
HIS
57
n
51
HIS
57
A
LYS
58
n
52
LYS
58
A
ASP
59
n
53
ASP
59
A
LEU
62
n
54
LEU
62
A
ALA
63
n
55
ALA
63
A
PHE
64
n
56
PHE
64
A
SER
65
n
57
SER
65
A
PRO
66
n
58
PRO
66
A
GLY
67
n
59
GLY
67
A
GLU
68
n
60
GLU
68
A
THR
69
n
61
THR
69
A
PHE
70
n
62
PHE
70
A
GLU
71
n
63
GLU
71
A
ALA
72
n
64
ALA
72
A
THR
73
n
65
THR
73
A
PHE
74
n
66
PHE
74
A
SER
75
n
67
SER
75
A
GLU
76
n
68
GLU
76
A
PRO
77
n
69
PRO
77
A
GLY
78
n
70
GLY
78
A
THR
79
n
71
THR
79
A
TYR
80
n
72
TYR
80
A
THR
81
n
73
THR
81
A
TYR
82
n
74
TYR
82
A
TYR
83
n
75
TYR
83
A
CYS
84
n
76
CYS
84
A
GLU
85
n
77
GLU
85
A
PRO
86
n
78
PRO
86
A
HIS
87
n
79
HIS
87
A
ARG
88
n
80
ARG
88
A
GLY
89
n
81
GLY
89
A
ALA
90
n
82
ALA
90
A
GLY
91
n
83
GLY
91
A
MET
92
n
84
MET
92
A
VAL
93
n
85
VAL
93
A
GLY
94
n
86
GLY
94
A
LYS
95
n
87
LYS
95
A
ILE
96
n
88
ILE
96
A
VAL
97
n
89
VAL
97
A
VAL
98
n
90
VAL
98
A
GLN
99
n
91
GLN
99
A
author_defined_assembly
1
monomeric
A
HIS
37
A
ND1
HIS
39
1_555
A
CU
200
B
CU
CU
1_555
A
CYS
84
A
SG
CYS
76
1_555
131.0
A
HIS
37
A
ND1
HIS
39
1_555
A
CU
200
B
CU
CU
1_555
A
HIS
87
A
ND1
HIS
79
1_555
101.4
A
CYS
84
A
SG
CYS
76
1_555
A
CU
200
B
CU
CU
1_555
A
HIS
87
A
ND1
HIS
79
1_555
121.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
1
A
O
VAL
3
A
N
THR
26
A
N
THR
28
A
O
VAL
27
A
O
VAL
29
A
N
ALA
72
A
N
ALA
64
A
O
ILE
19
A
O
ILE
21
A
N
LYS
95
A
N
LYS
87
A
O
GLY
94
A
O
GLY
86
A
N
TYR
82
A
N
TYR
74
17.7
0.1870000
0.1670000
0.1510000
1.9
10
785
7977
10
99.0
2.46
0.07
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.13
0.12
PDB ENTRY 1IUZ
1.9
10
82
776
1
0
693
0.016
0.02
0.027
0.03
0.035
0.05
0.184
0.07
0.195
0.15
0.181
0.3
0.244
0.3
3.4
2.0
16.5
15.0
15.0
1.9
30
1BXU
8058
0.0710000
1
4.4
99.1
0.1230000
1.9
1.97
1
97.3
model building
X-PLOR
refinement
REFMAC
refinement
X-PLOR
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
OXIDIZED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
1
N
N
2
N
N
3
N
N
A
PRO
53
A
PRO
47
HELX_P
A
LEU
55
A
LEU
49
5
1
3
A
ARG
88
A
ARG
80
HELX_P
A
ALA
90
A
ALA
82
5
2
3
metalc
1.973
A
HIS
37
A
ND1
HIS
39
1_555
A
CU
200
B
CU
CU
1_555
metalc
2.142
A
CYS
84
A
SG
CYS
76
1_555
A
CU
200
B
CU
CU
1_555
metalc
2.005
A
HIS
87
A
ND1
HIS
79
1_555
A
CU
200
B
CU
CU
1_555
COPPER PROTEIN
COPPER PROTEIN, ELECTRON TRANSFER
A
GLU
15
A
GLU
17
1
A
PRO
16
A
PRO
18
5.23
A
ALA
35
A
ALA
37
1
A
PRO
36
A
PRO
38
7.12
PLAS_SYNP7
UNP
1
1
P55020
MKVLASFARRLSLFAVAAVLCVGSFFLSAAPASAQTVAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVEGQ
PELSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVVQ
35
125
1BXU
-2
99
P55020
A
1
1
91
3
3
parallel
anti-parallel
parallel
anti-parallel
A
THR
-1
A
THR
2
A
MET
5
A
MET
7
A
THR
26
A
THR
28
A
ASN
31
A
ASN
33
A
THR
69
A
THR
61
A
THR
73
A
THR
65
A
THR
18
A
THR
20
A
GLN
22
A
GLN
24
A
VAL
93
A
VAL
85
A
GLN
99
A
GLN
91
A
GLY
78
A
GLY
70
A
TYR
83
A
TYR
75
COPPER BINDING SITE
Unknown
4
BINDING SITE FOR RESIDUE CU A 200
A
CU
200
Software
5
A
HIS
37
A
HIS
39
4
1_555
A
CYS
84
A
CYS
76
4
1_555
A
HIS
87
A
HIS
79
4
1_555
A
MET
92
A
MET
84
4
1_555
A
PRO
36
A
PRO
38
5
1_555
A
HIS
37
A
HIS
39
5
1_555
A
CYS
84
A
CYS
76
5
1_555
A
HIS
87
A
HIS
79
5
1_555
A
MET
92
A
MET
84
5
1_555
76
P 41