0.014455 0.000000 0.000383 0.000000 0.012829 0.000000 0.000000 0.000000 0.019642 0.00000 0.00000 0.00000 Schulz, G.E. Pautsch, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 91.52 90.00 69.180 77.950 50.930 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C16 H34 O5 306.438 (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 5 1013 1017 10.1038/2983 9808047 Structure of the outer membrane protein A transmembrane domain. 1998 10.2210/pdb1bxw/pdb pdb_00001bxw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 AREA DETECTOR 1998-01-15 SIEMENS NI FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 18892.898 PROTEIN (OUTER MEMBRANE PROTEIN A) TRANSMEMBRANE DOMAIN F23L, Q34K, K107Y 1 man polymer 306.438 (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 1 syn non-polymer 18.015 water 39 nat water no no MAPKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQL TAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDN GMLSLGVSYRFG MAPKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQL TAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDN GMLSLGVSYRFG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia coli BL21DE3 Escherichia Escherichia coli sample OMPA 469008 Escherichia coli BL21(DE3) 469008 Escherichia coli BL21(DE3) BL21DE3 PET3B-171 1 3.7 66.7 5.0 10 % PEG-8000 10 % MPD 0.05 M POTASSIUM PHOSPHATE PH 5.0 pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues struct_ref_seq_dif database_2 pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Advisory Database references Advisory Database references Derived calculations 1 0 1998-10-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-11-29 1 4 2018-03-14 1 5 2023-02-15 _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y RCSB 1998-10-03 REL REL C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HOH water C8E 172 2 C8E C8E 172 A HOH 1 3 HOH HOH 173 A HOH 2 3 HOH HOH 174 A HOH 3 3 HOH HOH 175 A HOH 4 3 HOH HOH 176 A HOH 5 3 HOH HOH 177 A HOH 6 3 HOH HOH 178 A HOH 7 3 HOH HOH 179 A HOH 8 3 HOH HOH 180 A HOH 9 3 HOH HOH 181 A HOH 10 3 HOH HOH 182 A HOH 11 3 HOH HOH 183 A HOH 12 3 HOH HOH 184 A HOH 13 3 HOH HOH 185 A HOH 14 3 HOH HOH 186 A HOH 15 3 HOH HOH 187 A HOH 16 3 HOH HOH 188 A HOH 17 3 HOH HOH 189 A HOH 18 3 HOH HOH 190 A HOH 19 3 HOH HOH 191 A HOH 20 3 HOH HOH 192 A HOH 21 3 HOH HOH 193 A HOH 22 3 HOH HOH 194 A HOH 23 3 HOH HOH 195 A HOH 24 3 HOH HOH 196 A HOH 25 3 HOH HOH 197 A HOH 26 3 HOH HOH 198 A HOH 27 3 HOH HOH 199 A HOH 28 3 HOH HOH 200 A HOH 29 3 HOH HOH 201 A HOH 30 3 HOH HOH 202 A HOH 31 3 HOH HOH 203 A HOH 32 3 HOH HOH 204 A HOH 33 3 HOH HOH 205 A HOH 34 3 HOH HOH 206 A HOH 35 3 HOH HOH 207 A HOH 36 3 HOH HOH 208 A HOH 37 3 HOH HOH 209 A HOH 38 3 HOH HOH 210 A HOH 39 3 HOH HOH 211 A MET 0 n 1 MET 0 A ALA 1 n 2 ALA 1 A PRO 2 n 3 PRO 2 A LYS 3 n 4 LYS 3 A ASP 4 n 5 ASP 4 A ASN 5 n 6 ASN 5 A THR 6 n 7 THR 6 A TRP 7 n 8 TRP 7 A TYR 8 n 9 TYR 8 A THR 9 n 10 THR 9 A GLY 10 n 11 GLY 10 A ALA 11 n 12 ALA 11 A LYS 12 n 13 LYS 12 A LEU 13 n 14 LEU 13 A GLY 14 n 15 GLY 14 A TRP 15 n 16 TRP 15 A SER 16 n 17 SER 16 A GLN 17 n 18 GLN 17 A TYR 18 n 19 TYR 18 A HIS 19 n 20 HIS 19 A ASP 20 n 21 ASP 20 A THR 21 n 22 THR 21 A GLY 22 n 23 GLY 22 A LEU 23 n 24 LEU 23 A ILE 24 n 25 ILE 24 A ASN 25 n 26 ASN 25 A ASN 26 n 27 ASN 26 A ASN 27 n 28 ASN 27 A GLY 28 n 29 GLY 28 A PRO 29 n 30 PRO 29 A THR 30 n 31 THR 30 A ALA 31 n 32 HIS 31 A GLU 32 n 33 GLU 32 A ASN 33 n 34 ASN 33 A LYS 34 n 35 LYS 34 A LEU 35 n 36 LEU 35 A GLY 36 n 37 GLY 36 A ALA 37 n 38 ALA 37 A GLY 38 n 39 GLY 38 A ALA 39 n 40 ALA 39 A PHE 40 n 41 PHE 40 A GLY 41 n 42 GLY 41 A GLY 42 n 43 GLY 42 A TYR 43 n 44 TYR 43 A GLN 44 n 45 GLN 44 A VAL 45 n 46 VAL 45 A ASN 46 n 47 ASN 46 A PRO 47 n 48 PRO 47 A TYR 48 n 49 TYR 48 A VAL 49 n 50 VAL 49 A GLY 50 n 51 GLY 50 A PHE 51 n 52 PHE 51 A GLU 52 n 53 GLU 52 A MET 53 n 54 MET 53 A GLY 54 n 55 GLY 54 A TYR 55 n 56 TYR 55 A ASP 56 n 57 ASP 56 A TRP 57 n 58 TRP 57 A LEU 58 n 59 LEU 58 A GLY 59 n 60 GLY 59 A ARG 60 n 61 ARG 60 A MET 61 n 62 MET 61 A PRO 62 n 63 PRO 62 A TYR 63 n 64 TYR 63 A LYS 64 n 65 LYS 64 A GLY 65 n 66 GLY 65 A SER 66 n 67 SER 66 A VAL 67 n 68 VAL 67 A GLU 68 n 69 GLU 68 A ASN 69 n 70 ASN 69 A GLY 70 n 71 GLY 70 A ALA 71 n 72 ALA 71 A TYR 72 n 73 TYR 72 A LYS 73 n 74 LYS 73 A ALA 74 n 75 ALA 74 A GLN 75 n 76 GLN 75 A GLY 76 n 77 GLY 76 A VAL 77 n 78 VAL 77 A GLN 78 n 79 GLN 78 A LEU 79 n 80 LEU 79 A THR 80 n 81 THR 80 A ALA 81 n 82 ALA 81 A LYS 82 n 83 LYS 82 A LEU 83 n 84 LEU 83 A GLY 84 n 85 GLY 84 A TYR 85 n 86 TYR 85 A PRO 86 n 87 PRO 86 A ILE 87 n 88 ILE 87 A THR 88 n 89 THR 88 A ASP 89 n 90 ASP 89 A ASP 90 n 91 ASP 90 A LEU 91 n 92 LEU 91 A ASP 92 n 93 ASP 92 A ILE 93 n 94 ILE 93 A TYR 94 n 95 TYR 94 A THR 95 n 96 THR 95 A ARG 96 n 97 ARG 96 A LEU 97 n 98 LEU 97 A GLY 98 n 99 GLY 98 A GLY 99 n 100 GLY 99 A MET 100 n 101 MET 100 A VAL 101 n 102 VAL 101 A TRP 102 n 103 TRP 102 A ARG 103 n 104 ARG 103 A ALA 104 n 105 ALA 104 A ASP 105 n 106 ASP 105 A THR 106 n 107 THR 106 A TYR 107 n 108 TYR 107 A SER 108 n 109 SER 108 A ASN 109 n 110 ASN 109 A VAL 110 n 111 VAL 110 A TYR 111 n 112 TYR 111 A GLY 112 n 113 GLY 112 A LYS 113 n 114 LYS 113 A ASN 114 n 115 ASN 114 A HIS 115 n 116 HIS 115 A ASP 116 n 117 ASP 116 A THR 117 n 118 THR 117 A GLY 118 n 119 GLY 118 A VAL 119 n 120 VAL 119 A SER 120 n 121 SER 120 A PRO 121 n 122 PRO 121 A VAL 122 n 123 VAL 122 A PHE 123 n 124 PHE 123 A ALA 124 n 125 ALA 124 A GLY 125 n 126 GLY 125 A GLY 126 n 127 GLY 126 A VAL 127 n 128 VAL 127 A GLU 128 n 129 GLU 128 A TYR 129 n 130 TYR 129 A ALA 130 n 131 ALA 130 A ILE 131 n 132 ILE 131 A THR 132 n 133 THR 132 A PRO 133 n 134 PRO 133 A GLU 134 n 135 GLU 134 A ILE 135 n 136 ILE 135 A ALA 136 n 137 ALA 136 A THR 137 n 138 THR 137 A ARG 138 n 139 ARG 138 A LEU 139 n 140 LEU 139 A GLU 140 n 141 GLU 140 A TYR 141 n 142 TYR 141 A GLN 142 n 143 GLN 142 A TRP 143 n 144 TRP 143 A THR 144 n 145 THR 144 A ASN 145 n 146 ASN 145 A ASN 146 n 147 ASN 146 A ILE 147 n 148 ILE 147 A GLY 148 n 149 GLY 148 A ASP 149 n 150 ASP 149 A ALA 150 n 151 ALA 150 A HIS 151 n 152 HIS 151 A THR 152 n 153 THR 152 A ILE 153 n 154 ILE 153 A GLY 154 n 155 GLY 154 A THR 155 n 156 THR 155 A ARG 156 n 157 ARG 156 A PRO 157 n 158 PRO 157 A ASP 158 n 159 ASP 158 A ASN 159 n 160 ASN 159 A GLY 160 n 161 GLY 160 A MET 161 n 162 MET 161 A LEU 162 n 163 LEU 162 A SER 163 n 164 SER 163 A LEU 164 n 165 LEU 164 A GLY 165 n 166 GLY 165 A VAL 166 n 167 VAL 166 A SER 167 n 168 SER 167 A TYR 168 n 169 TYR 168 A ARG 169 n 170 ARG 169 A PHE 170 n 171 PHE 170 A GLY 171 n 172 GLY 171 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG HIS 31 A CG HIS 32 1 Y 1 A ND1 HIS 31 A ND1 HIS 32 1 Y 1 A CD2 HIS 31 A CD2 HIS 32 1 Y 1 A CE1 HIS 31 A CE1 HIS 32 1 Y 1 A NE2 HIS 31 A NE2 HIS 32 1 Y 1 A CB LYS 64 A CB LYS 65 0 Y 1 A CG LYS 64 A CG LYS 65 0 Y 1 A CD LYS 64 A CD LYS 65 0 Y 1 A CE LYS 64 A CE LYS 65 0 Y 1 A NZ LYS 64 A NZ LYS 65 0 Y 1 A GLY 22 A GLY 23 0 Y 1 A LEU 23 A LEU 24 0 Y 1 A ILE 24 A ILE 25 0 Y 1 A ASN 25 A ASN 26 0 Y 1 A ASN 26 A ASN 27 0 Y 1 A ASN 27 A ASN 28 0 Y 1 A GLY 28 A GLY 29 0 Y 1 A GLY 65 A GLY 66 0 Y 1 A SER 66 A SER 67 0 Y 1 A VAL 67 A VAL 68 0 Y 1 A GLU 68 A GLU 69 0 Y 1 A ILE 147 A ILE 148 0 Y 1 A GLY 148 A GLY 149 0 Y 1 A ASP 149 A ASP 150 0 Y 1 A ALA 150 A ALA 151 0 Y 1 A HIS 151 A HIS 152 0 Y 1 A THR 152 A THR 153 0 Y 1 A ILE 153 A ILE 154 0 Y 1 A GLY 154 A GLY 155 0 Y 1 A THR 155 A THR 156 0 Y 1 A ARG 156 A ARG 157 0 Y 1 A PRO 157 A PRO 158 0 Y 1 A ARG 156 -11.76 1 A A ARG PRO 156 157 -147.47 1 A A C N THR GLY 21 22 2.00 1 A A C N LYS GLY 64 65 3.14 1 A A C N GLU ASN 68 69 3.19 1 A A C N ASN ILE 146 147 2.10 1 A A C N PRO ASP 157 158 1.84 1 18.33 2.20 117.20 135.53 A A A CA C N ASP ASP ASN 4 4 5 Y 1 11.31 1.60 122.70 134.01 A A A O C N GLY GLY LEU 22 22 23 Y 1 -16.46 2.50 121.70 105.24 A A A C N CA ILE ASN ASN 24 25 25 Y 1 -14.24 2.20 117.20 102.96 A A A CA C N ASN ASN ASN 25 25 26 Y 1 14.77 1.60 122.70 137.47 A A A O C N ASN ASN ASN 25 25 26 Y 1 -11.61 1.90 121.10 109.49 A A A O C N GLY GLY PRO 28 28 29 Y 1 17.41 1.50 119.30 136.71 A A A C N CA GLY PRO PRO 28 29 29 Y 1 -18.11 2.10 128.40 110.29 A A A C N CD GLY PRO PRO 28 29 29 Y 1 9.77 1.40 123.60 133.37 A A A CD NE CZ ARG ARG ARG 60 60 60 N 1 3.66 0.50 120.30 123.96 A A A NE CZ NH1 ARG ARG ARG 60 60 60 N 1 -3.31 0.50 120.30 116.99 A A A NE CZ NH2 ARG ARG ARG 60 60 60 N 1 -16.34 2.50 121.70 105.36 A A A C N CA VAL GLU GLU 67 68 68 Y 1 13.09 2.00 110.40 123.49 A A A CB CA C GLN GLN GLN 75 75 75 N 1 5.72 0.90 118.30 124.02 A A A CB CG OD1 ASP ASP ASP 90 90 90 N 1 -9.20 1.50 110.50 101.30 A A A N CA CB SER SER SER 120 120 120 N 1 -12.16 1.90 111.40 99.24 A A A CB CA C VAL VAL VAL 122 122 122 N 1 15.58 2.00 110.90 126.48 A A A CA CB CG2 ILE ILE ILE 135 135 135 N 1 14.80 2.20 113.40 128.20 A A A CA CB CG ARG ARG ARG 138 138 138 N 1 10.68 1.40 123.60 134.28 A A A CD NE CZ ARG ARG ARG 138 138 138 N 1 -3.32 0.50 120.30 116.98 A A A NE CZ NH2 ARG ARG ARG 138 138 138 N 1 -16.23 2.20 117.20 100.97 A A A CA C N ALA ALA HIS 150 150 151 Y 1 17.59 1.60 122.70 140.29 A A A O C N ALA ALA HIS 150 150 151 Y 1 -38.19 2.00 110.40 72.21 A A A CB CA C HIS HIS HIS 151 151 151 N 1 -38.21 2.20 117.20 78.99 A A A CA C N HIS HIS THR 151 151 152 Y 1 43.44 1.60 122.70 166.14 A A A O C N HIS HIS THR 151 151 152 Y 1 29.96 2.50 121.70 151.66 A A A C N CA HIS THR THR 151 152 152 Y 1 -14.55 1.60 122.70 108.15 A A A O C N THR THR ARG 155 155 156 Y 1 -16.37 2.50 121.70 105.33 A A A C N CA THR ARG ARG 155 156 156 Y 1 12.40 2.00 110.40 122.80 A A A CB CA C ARG ARG ARG 156 156 156 N 1 -15.87 1.80 110.60 94.73 A A A N CA CB ARG ARG ARG 156 156 156 N 1 -6.60 1.10 119.40 112.80 A A A NH1 CZ NH2 ARG ARG ARG 156 156 156 N 1 3.71 0.50 120.30 124.01 A A A NE CZ NH2 ARG ARG ARG 156 156 156 N 1 -16.90 1.50 119.30 102.40 A A A C N CA ARG PRO PRO 156 157 157 Y 1 -16.68 2.10 128.40 111.72 A A A C N CD ARG PRO PRO 156 157 157 Y 1 -25.94 1.40 111.70 85.76 A A A CA N CD PRO PRO PRO 157 157 157 N 1 -26.10 1.20 103.30 77.20 A A A N CA CB PRO PRO PRO 157 157 157 N 1 -25.67 3.90 106.50 80.83 A A A CB CG CD PRO PRO PRO 157 157 157 N 1 -33.95 1.50 103.20 69.25 A A A N CD CG PRO PRO PRO 157 157 157 N 1 19.06 2.60 112.10 131.16 A A A N CA C PRO PRO PRO 157 157 157 N 1 -17.22 2.40 120.20 102.98 A A A CA C O PRO PRO PRO 157 157 157 N 1 A A C N GLY PRO 28 29 0.125 0.019 1.338 1.463 Y 1 A A N CA GLY GLY 148 148 0.090 0.015 1.456 1.546 N 1 A A CA C ARG ARG 156 156 0.206 0.026 1.525 1.731 N 1 A A N CA PRO PRO 157 157 -0.251 0.017 1.468 1.217 N 1 A A CD N PRO PRO 157 157 -0.368 0.014 1.474 1.106 N 1 A A CA C PRO PRO 157 157 -0.164 0.020 1.524 1.360 N 1 A A OD1 CA ASN PRO 26 29 1.44 1_555 2_556 1 A A OD1 C ASN PRO 26 29 1.68 1_555 2_556 1 A A OD1 N ASN PRO 26 29 1.72 1_555 2_556 1 A A OD1 CD1 ASN ILE 5 147 2.03 1_555 2_657 1 A A OD1 O ASN PRO 26 29 2.08 1_555 2_556 1 A A CG N ASN PRO 26 29 2.11 1_555 2_556 1 A ASN 5 -113.00 57.62 1 A TYR 18 166.90 120.18 1 A ASP 20 -156.38 -140.62 1 A LEU 23 68.74 150.39 1 A ASN 25 -9.26 -90.55 1 A ASN 26 -29.94 121.49 1 A HIS 31 173.40 175.58 1 A TYR 63 -169.58 102.76 1 A SER 66 128.49 52.30 1 A VAL 67 49.93 90.53 1 A VAL 110 -67.54 -72.06 1 A ALA 150 173.09 -164.72 1 A HIS 151 35.47 -97.21 1 A THR 152 -128.76 -139.61 1 A THR 155 -149.83 -137.22 1 A ARG 156 -178.66 -162.43 60.4 DISORDERED REGIONS ARE FROM GLY22-GLY28, GLY65-GLU68 AND ILE147-PRO147 WERE MODELED STEREOCHEMICALLY 0.2350000 0.1890000 2.5 50.0 404 8328 5 89 3.64 RANDOM 1 THROUGHOUT 0.0 MIRAS 2.5 50.0 39 1390 21 0 1330 0.015 0.03 49.2 2.50 50 1BXW 8328 0.028 1 16.8 2.1 89 2.5 2.64 6.6 0.110 1.2 53 phasing SHARP refinement REFMAC data reduction XDS data scaling CCP4 (SCALA) OUTER MEMBRANE PROTEIN A (OMPA) TRANSMEMBRANE DOMAIN 1 N N 2 N N 3 N N MEMBRANE PROTEIN OUTER MEMBRANE, TRANSMEMBRANE PROTEIN, MEMBRANE PROTEIN OMPA_ECOLI UNP 1 P0A910 21 192 1BXW 0 171 P0A910 A 1 1 172 1 ALA SEE REMARK 999 MET 0 1BXW A P0A910 UNP 21 1 1 PHE engineered mutation LEU 23 1BXW A P0A910 UNP 44 24 1 GLN engineered mutation LYS 34 1BXW A P0A910 UNP 55 35 1 LYS engineered mutation TYR 107 1BXW A P0A910 UNP 128 108 1 1 1 1 1 1 1 1 A THR 6 A THR 7 A SER 16 A SER 17 A LYS 34 A LYS 35 A VAL 45 A VAL 46 A VAL 49 A VAL 50 A ARG 60 A ARG 61 A TYR 72 A TYR 73 A PRO 86 A PRO 87 A LEU 91 A LEU 92 A THR 106 A THR 107 A ASN 114 A ASN 115 A ALA 130 A ALA 131 A ILE 135 A ILE 136 A TRP 143 A TRP 144 A MET 161 A MET 162 A PHE 170 A PHE 171 BINDING SITE FOR RESIDUE C8E A 172 A C8E 172 Software 5 A TYR 43 A TYR 44 5 1_555 A PHE 51 A PHE 52 5 1_555 A LEU 79 A LEU 80 5 1_555 A LEU 79 A LEU 80 5 2_657 A GLY 99 A GLY 100 5 2_657 5 C 1 2 1