1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Cheng, J.W.
Lin, I.J.
Lou, Y.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
N
N
9
N
C
N
10
N
N
N
11
N
N
N
12
N
O
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
N
N
29
S
C
N
30
N
C
N
31
N
O
N
32
N
C
N
33
N
C
N
34
N
O
N
35
N
N
N
36
N
O
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
N
N
46
S
C
N
47
N
C
N
48
N
O
N
49
N
C
N
50
N
C
N
51
N
O
N
52
N
O
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
N
N
62
S
C
N
63
N
C
N
64
N
O
N
65
N
C
N
66
N
C
N
67
N
C
N
68
N
O
N
69
N
O
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
N
N
81
S
C
N
82
N
C
N
83
N
O
N
84
S
C
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
S
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
S
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
Y
171
N
C
Y
172
N
C
Y
173
N
C
Y
174
N
N
Y
175
N
C
Y
176
N
C
Y
177
N
C
Y
178
N
C
Y
179
N
C
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
doub
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
Y
170
N
doub
Y
171
N
sing
Y
172
N
sing
N
173
N
sing
Y
174
N
doub
Y
175
N
sing
Y
176
N
sing
N
177
N
sing
Y
178
N
sing
Y
179
N
doub
N
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
US
Proteins
PSFGEY
0867
0887-3585
37
121
129
10.1002/(SICI)1097-0134(19991001)37:1<121::AID-PROT12>3.3.CO;2-K
10451556
Solution structure and RNA-binding activity of the N-terminal leucine-repeat region of hepatitis delta antigen
1999
10.2210/pdb1by0/pdb
pdb_00001by0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
N-TERMINAL LEUCINE-REPEAT REGION OF HEPATITIS DELTA ANTIGEN
3475.154
PROTEIN (HEPATITIS DELTA ANTIGEN)
RESIDUES 24-50
1
syn
polymer
no
no
RKKLEELERDLRKLKKKIKKLEEDNPW
RKKLEELERDLRKLKKKIKKLEEDNPW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
1999-12-29
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
RCSB
1998-10-22
REL
REL
THE PROTEIN WAS CHEMICALLY SYNTHESIZED FROM THE HEPATITIS D VIRUS
sample
DISTANCE RESTRAINTS WERE REQUIRED FROM NOES ASSIGNED IN A 2D NOESY SPECTRUM
WITH 75 MS MIXING TIME.
LOWEST TOTAL ENERGY
200
20
TOCSY
NOESY
DQF-COSY
6.8
1
atm
298
K
simulated annealing
BRUNGER
refinement
X-PLOR
3.851
structure solution
X-PLOR
600
Bruker
DMX600
ARG
1
n
1
ARG
1
A
LYS
2
n
2
LYS
2
A
LYS
3
n
3
LYS
3
A
LEU
4
n
4
LEU
4
A
GLU
5
n
5
GLU
5
A
GLU
6
n
6
GLU
6
A
LEU
7
n
7
LEU
7
A
GLU
8
n
8
GLU
8
A
ARG
9
n
9
ARG
9
A
ASP
10
n
10
ASP
10
A
LEU
11
n
11
LEU
11
A
ARG
12
n
12
ARG
12
A
LYS
13
n
13
LYS
13
A
LEU
14
n
14
LEU
14
A
LYS
15
n
15
LYS
15
A
LYS
16
n
16
LYS
16
A
LYS
17
n
17
LYS
17
A
ILE
18
n
18
ILE
18
A
LYS
19
n
19
LYS
19
A
LYS
20
n
20
LYS
20
A
LEU
21
n
21
LEU
21
A
GLU
22
n
22
GLU
22
A
GLU
23
n
23
GLU
23
A
ASP
24
n
24
ASP
24
A
ASN
25
n
25
ASN
25
A
PRO
26
n
26
PRO
26
A
TRP
27
n
27
TRP
27
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
8
A
A
O
H
LYS
ASP
20
24
1.49
10
A
A
O
H
LYS
ASP
20
24
1.52
1
A
ARG
1
0.301
SIDE CHAIN
1
A
ARG
9
0.163
SIDE CHAIN
1
A
ARG
12
0.313
SIDE CHAIN
2
A
ARG
1
0.291
SIDE CHAIN
2
A
ARG
9
0.290
SIDE CHAIN
2
A
ARG
12
0.297
SIDE CHAIN
3
A
ARG
1
0.172
SIDE CHAIN
3
A
ARG
9
0.286
SIDE CHAIN
3
A
ARG
12
0.310
SIDE CHAIN
4
A
ARG
1
0.224
SIDE CHAIN
4
A
ARG
9
0.103
SIDE CHAIN
4
A
ARG
12
0.288
SIDE CHAIN
5
A
ARG
1
0.308
SIDE CHAIN
5
A
ARG
9
0.317
SIDE CHAIN
5
A
ARG
12
0.256
SIDE CHAIN
6
A
ARG
1
0.198
SIDE CHAIN
6
A
ARG
9
0.298
SIDE CHAIN
6
A
ARG
12
0.281
SIDE CHAIN
7
A
ARG
1
0.220
SIDE CHAIN
7
A
ARG
9
0.310
SIDE CHAIN
7
A
ARG
12
0.247
SIDE CHAIN
8
A
ARG
1
0.187
SIDE CHAIN
8
A
ARG
9
0.212
SIDE CHAIN
8
A
ARG
12
0.309
SIDE CHAIN
9
A
ARG
1
0.291
SIDE CHAIN
9
A
ARG
9
0.231
SIDE CHAIN
9
A
ARG
12
0.171
SIDE CHAIN
10
A
ARG
1
0.313
SIDE CHAIN
10
A
ARG
9
0.314
SIDE CHAIN
10
A
ARG
12
0.278
SIDE CHAIN
11
A
ARG
1
0.306
SIDE CHAIN
11
A
ARG
9
0.224
SIDE CHAIN
11
A
ARG
12
0.163
SIDE CHAIN
12
A
ARG
1
0.182
SIDE CHAIN
12
A
ARG
9
0.315
SIDE CHAIN
12
A
ARG
12
0.254
SIDE CHAIN
13
A
ARG
1
0.259
SIDE CHAIN
13
A
ARG
9
0.265
SIDE CHAIN
13
A
ARG
12
0.316
SIDE CHAIN
14
A
ARG
1
0.189
SIDE CHAIN
14
A
ARG
9
0.284
SIDE CHAIN
14
A
ARG
12
0.288
SIDE CHAIN
15
A
ARG
1
0.314
SIDE CHAIN
15
A
ARG
9
0.295
SIDE CHAIN
15
A
ARG
12
0.318
SIDE CHAIN
16
A
ARG
1
0.296
SIDE CHAIN
16
A
ARG
9
0.207
SIDE CHAIN
16
A
ARG
12
0.223
SIDE CHAIN
17
A
ARG
1
0.214
SIDE CHAIN
17
A
ARG
9
0.285
SIDE CHAIN
17
A
ARG
12
0.120
SIDE CHAIN
18
A
ARG
1
0.299
SIDE CHAIN
18
A
ARG
9
0.212
SIDE CHAIN
18
A
ARG
12
0.132
SIDE CHAIN
19
A
ARG
1
0.224
SIDE CHAIN
19
A
ARG
9
0.239
SIDE CHAIN
19
A
ARG
12
0.304
SIDE CHAIN
20
A
ARG
1
0.318
SIDE CHAIN
20
A
ARG
9
0.315
SIDE CHAIN
20
A
ARG
12
0.301
SIDE CHAIN
1
A
LYS
2
-88.52
42.36
1
A
LEU
4
-90.07
-65.04
1
A
GLU
23
-59.17
-150.01
1
A
ASP
24
70.66
57.72
1
A
PRO
26
-78.15
-79.99
2
A
LYS
2
-82.31
46.98
2
A
LEU
4
-90.02
-70.68
2
A
GLU
23
-89.72
-96.49
2
A
PRO
26
-79.02
-80.56
3
A
LYS
2
-88.91
42.94
3
A
LEU
4
-90.05
-73.18
3
A
GLU
23
-62.16
-136.36
3
A
PRO
26
-77.97
-73.78
4
A
LEU
4
-90.03
-61.60
4
A
LEU
14
-78.31
-71.02
4
A
LYS
15
-39.01
-26.64
4
A
GLU
23
-80.28
-97.91
4
A
ASP
24
80.50
-15.92
4
A
PRO
26
-78.32
-71.63
5
A
LYS
2
-89.77
43.33
5
A
LEU
4
-90.04
-70.03
5
A
PRO
26
-77.56
-71.45
6
A
LEU
4
-90.03
-68.76
6
A
GLU
23
-64.08
-84.00
6
A
ASN
25
-42.01
156.20
6
A
PRO
26
-78.54
-75.70
7
A
LYS
2
-82.54
44.57
7
A
LEU
4
-90.01
-73.71
7
A
LYS
15
-39.32
-27.26
7
A
GLU
23
-67.73
-90.24
7
A
PRO
26
-77.80
-76.15
8
A
LEU
4
-89.99
-71.59
8
A
GLU
23
-127.49
-50.13
8
A
ASP
24
-48.53
97.19
8
A
PRO
26
-78.52
-70.11
9
A
LYS
2
-86.56
47.93
9
A
LEU
4
-90.02
-71.09
10
A
LEU
14
-75.89
-70.32
10
A
GLU
23
-135.39
-33.40
10
A
ASP
24
-96.49
57.44
10
A
PRO
26
-78.01
-84.84
11
A
LEU
4
-89.99
-71.69
11
A
PRO
26
-78.05
-82.72
12
A
LEU
4
-90.00
-73.28
12
A
GLU
6
-48.14
-70.93
12
A
LYS
15
-38.86
-27.47
12
A
ASP
24
65.40
-68.30
12
A
PRO
26
-77.68
-73.62
13
A
LYS
2
-89.99
41.25
13
A
ASN
25
-50.79
171.11
13
A
PRO
26
-77.85
-81.79
14
A
ASP
24
-62.19
77.93
15
A
LEU
4
-90.02
-64.06
15
A
LEU
14
-83.15
-71.39
15
A
LYS
15
-40.00
-25.76
15
A
GLU
23
-65.37
-168.38
15
A
ASP
24
77.37
-51.07
15
A
PRO
26
-77.91
-75.43
16
A
LYS
2
-84.83
48.52
16
A
LEU
4
-90.14
-69.81
16
A
LYS
15
-38.06
-28.35
16
A
ASP
24
-177.67
28.26
16
A
PRO
26
-77.84
-72.84
17
A
LYS
2
-81.83
48.02
17
A
LEU
4
-90.07
-71.60
17
A
LEU
14
-78.06
-72.25
17
A
PRO
26
-78.04
-74.18
18
A
LYS
2
-89.52
36.39
18
A
ASP
24
163.83
-25.85
18
A
PRO
26
-78.00
-75.48
19
A
LYS
2
-81.21
46.56
19
A
LEU
4
-90.01
-63.11
19
A
LYS
15
-38.62
-28.25
19
A
PRO
26
-77.71
-74.19
20
A
LYS
2
-87.49
43.18
20
A
LEU
14
-78.57
-70.22
20
A
PRO
26
-78.22
-72.50
N-TERMINAL LEUCINE-REPEAT REGION OF HEPATITIS DELTA ANTIGEN
1
N
N
A
LYS
2
A
LYS
2
HELX_P
A
LEU
21
A
LEU
21
1
1
20
RNA BINDING PROTEIN
HEPATITIS DELTA ANTIGEN, HELIX, SOLUTION STRUCTURE, RNA BINDING, RNA BINDING PROTEIN
AANT_HDVAM
UNP
1
P25989
24
50
1BY0
1
27
P25989
A
1
1
27
1
P 1