0.016932
0.000000
0.000000
0.000000
0.016932
0.000000
0.000000
0.000000
0.008985
0.00000
0.00000
0.00000
Stuckey, J.A.
Dixon, J.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
59.060
59.060
111.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
6
278
284
10.1038/6716
10074947
Crystal structure of a phospholipase D family member.
1999
10.2210/pdb1byr/pdb
pdb_00001byr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
123
1
ADSC
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
17175.416
PROTEIN (ENDONUCLEASE)
1
man
polymer
18.015
water
188
nat
water
no
no
VEPSVQVGYSPEGSARVLVLSAIDSAKTSIRMMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANS
GIPLRTDSNFPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLEHWQDRWNQGRDYRSSY
VEPSVQVGYSPEGSARVLVLSAIDSAKTSIRMMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANS
GIPLRTDSNFPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLEHWQDRWNQGRDYRSSY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Salmonella
Escherichia
Escherichia coli
sample
PERIPLASM
NUC
602
Salmonella typhimurium
PERIPLASM
NUC
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PT7-7
1
2.86
55
7.5
10 MG/ML PROTEIN + 2M NH4SO4, 100MM TRIS-HCL,PH 7.5
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
1
0
1999-10-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
RCSB
1998-10-19
REL
HOH
water
HOH
1
2
HOH
HOH
156
A
HOH
2
2
HOH
HOH
157
A
HOH
3
2
HOH
HOH
158
A
HOH
4
2
HOH
HOH
159
A
HOH
5
2
HOH
HOH
160
A
HOH
6
2
HOH
HOH
161
A
HOH
7
2
HOH
HOH
162
A
HOH
8
2
HOH
HOH
163
A
HOH
9
2
HOH
HOH
164
A
HOH
10
2
HOH
HOH
165
A
HOH
11
2
HOH
HOH
166
A
HOH
12
2
HOH
HOH
167
A
HOH
13
2
HOH
HOH
168
A
HOH
14
2
HOH
HOH
169
A
HOH
15
2
HOH
HOH
170
A
HOH
16
2
HOH
HOH
171
A
HOH
17
2
HOH
HOH
172
A
HOH
18
2
HOH
HOH
173
A
HOH
19
2
HOH
HOH
174
A
HOH
20
2
HOH
HOH
175
A
HOH
21
2
HOH
HOH
176
A
HOH
22
2
HOH
HOH
177
A
HOH
23
2
HOH
HOH
178
A
HOH
24
2
HOH
HOH
179
A
HOH
25
2
HOH
HOH
180
A
HOH
26
2
HOH
HOH
181
A
HOH
27
2
HOH
HOH
182
A
HOH
28
2
HOH
HOH
183
A
HOH
29
2
HOH
HOH
184
A
HOH
30
2
HOH
HOH
185
A
HOH
31
2
HOH
HOH
186
A
HOH
32
2
HOH
HOH
187
A
HOH
33
2
HOH
HOH
188
A
HOH
34
2
HOH
HOH
189
A
HOH
35
2
HOH
HOH
190
A
HOH
36
2
HOH
HOH
191
A
HOH
37
2
HOH
HOH
192
A
HOH
38
2
HOH
HOH
193
A
HOH
39
2
HOH
HOH
194
A
HOH
40
2
HOH
HOH
195
A
HOH
41
2
HOH
HOH
196
A
HOH
42
2
HOH
HOH
197
A
HOH
43
2
HOH
HOH
198
A
HOH
44
2
HOH
HOH
199
A
HOH
45
2
HOH
HOH
200
A
HOH
46
2
HOH
HOH
201
A
HOH
47
2
HOH
HOH
202
A
HOH
48
2
HOH
HOH
203
A
HOH
49
2
HOH
HOH
204
A
HOH
50
2
HOH
HOH
205
A
HOH
51
2
HOH
HOH
206
A
HOH
52
2
HOH
HOH
207
A
HOH
53
2
HOH
HOH
208
A
HOH
54
2
HOH
HOH
209
A
HOH
55
2
HOH
HOH
210
A
HOH
56
2
HOH
HOH
211
A
HOH
57
2
HOH
HOH
212
A
HOH
58
2
HOH
HOH
213
A
HOH
60
2
HOH
HOH
214
A
HOH
61
2
HOH
HOH
215
A
HOH
62
2
HOH
HOH
216
A
HOH
63
2
HOH
HOH
217
A
HOH
64
2
HOH
HOH
218
A
HOH
65
2
HOH
HOH
219
A
HOH
66
2
HOH
HOH
220
A
HOH
67
2
HOH
HOH
221
A
HOH
68
2
HOH
HOH
222
A
HOH
69
2
HOH
HOH
223
A
HOH
70
2
HOH
HOH
224
A
HOH
71
2
HOH
HOH
225
A
HOH
72
2
HOH
HOH
226
A
HOH
73
2
HOH
HOH
227
A
HOH
74
2
HOH
HOH
228
A
HOH
75
2
HOH
HOH
229
A
HOH
76
2
HOH
HOH
230
A
HOH
78
2
HOH
HOH
231
A
HOH
79
2
HOH
HOH
232
A
HOH
80
2
HOH
HOH
233
A
HOH
81
2
HOH
HOH
234
A
HOH
83
2
HOH
HOH
235
A
HOH
84
2
HOH
HOH
236
A
HOH
85
2
HOH
HOH
237
A
HOH
86
2
HOH
HOH
238
A
HOH
87
2
HOH
HOH
239
A
HOH
88
2
HOH
HOH
240
A
HOH
89
2
HOH
HOH
241
A
HOH
90
2
HOH
HOH
242
A
HOH
91
2
HOH
HOH
243
A
HOH
92
2
HOH
HOH
244
A
HOH
94
2
HOH
HOH
245
A
HOH
95
2
HOH
HOH
246
A
HOH
96
2
HOH
HOH
247
A
HOH
97
2
HOH
HOH
248
A
HOH
98
2
HOH
HOH
249
A
HOH
99
2
HOH
HOH
250
A
HOH
100
2
HOH
HOH
251
A
HOH
101
2
HOH
HOH
252
A
HOH
102
2
HOH
HOH
253
A
HOH
104
2
HOH
HOH
254
A
HOH
105
2
HOH
HOH
255
A
HOH
106
2
HOH
HOH
256
A
HOH
109
2
HOH
HOH
257
A
HOH
110
2
HOH
HOH
258
A
HOH
111
2
HOH
HOH
259
A
HOH
112
2
HOH
HOH
260
A
HOH
113
2
HOH
HOH
261
A
HOH
114
2
HOH
HOH
262
A
HOH
115
2
HOH
HOH
263
A
HOH
116
2
HOH
HOH
264
A
HOH
117
2
HOH
HOH
265
A
HOH
120
2
HOH
HOH
266
A
HOH
121
2
HOH
HOH
267
A
HOH
122
2
HOH
HOH
268
A
HOH
124
2
HOH
HOH
269
A
HOH
125
2
HOH
HOH
270
A
HOH
126
2
HOH
HOH
271
A
HOH
128
2
HOH
HOH
272
A
HOH
129
2
HOH
HOH
273
A
HOH
130
2
HOH
HOH
274
A
HOH
131
2
HOH
HOH
275
A
HOH
132
2
HOH
HOH
276
A
HOH
133
2
HOH
HOH
277
A
HOH
136
2
HOH
HOH
278
A
HOH
137
2
HOH
HOH
279
A
HOH
138
2
HOH
HOH
280
A
HOH
139
2
HOH
HOH
281
A
HOH
141
2
HOH
HOH
282
A
HOH
142
2
HOH
HOH
283
A
HOH
143
2
HOH
HOH
284
A
HOH
146
2
HOH
HOH
285
A
HOH
150
2
HOH
HOH
286
A
HOH
153
2
HOH
HOH
287
A
HOH
154
2
HOH
HOH
288
A
HOH
155
2
HOH
HOH
289
A
HOH
160
2
HOH
HOH
290
A
HOH
163
2
HOH
HOH
291
A
HOH
164
2
HOH
HOH
292
A
HOH
166
2
HOH
HOH
293
A
HOH
169
2
HOH
HOH
294
A
HOH
170
2
HOH
HOH
295
A
HOH
171
2
HOH
HOH
296
A
HOH
174
2
HOH
HOH
297
A
HOH
175
2
HOH
HOH
298
A
HOH
176
2
HOH
HOH
299
A
HOH
179
2
HOH
HOH
300
A
HOH
183
2
HOH
HOH
301
A
HOH
186
2
HOH
HOH
302
A
HOH
192
2
HOH
HOH
303
A
HOH
193
2
HOH
HOH
304
A
HOH
194
2
HOH
HOH
305
A
HOH
198
2
HOH
HOH
306
A
HOH
202
2
HOH
HOH
307
A
HOH
205
2
HOH
HOH
308
A
HOH
206
2
HOH
HOH
309
A
HOH
207
2
HOH
HOH
310
A
HOH
208
2
HOH
HOH
311
A
HOH
220
2
HOH
HOH
312
A
HOH
222
2
HOH
HOH
313
A
HOH
223
2
HOH
HOH
314
A
HOH
224
2
HOH
HOH
315
A
HOH
225
2
HOH
HOH
316
A
HOH
228
2
HOH
HOH
317
A
HOH
237
2
HOH
HOH
318
A
HOH
246
2
HOH
HOH
319
A
HOH
247
2
HOH
HOH
320
A
HOH
248
2
HOH
HOH
321
A
HOH
252
2
HOH
HOH
322
A
HOH
253
2
HOH
HOH
323
A
HOH
257
2
HOH
HOH
324
A
HOH
259
2
HOH
HOH
325
A
HOH
260
2
HOH
HOH
326
A
HOH
267
2
HOH
HOH
327
A
HOH
275
2
HOH
HOH
328
A
HOH
279
2
HOH
HOH
329
A
HOH
282
2
HOH
HOH
330
A
HOH
285
2
HOH
HOH
331
A
HOH
289
2
HOH
HOH
332
A
HOH
290
2
HOH
HOH
333
A
HOH
298
2
HOH
HOH
334
A
HOH
301
2
HOH
HOH
335
A
HOH
307
2
HOH
HOH
336
A
HOH
308
2
HOH
HOH
337
A
HOH
309
2
HOH
HOH
338
A
HOH
313
2
HOH
HOH
339
A
HOH
317
2
HOH
HOH
340
A
HOH
318
2
HOH
HOH
341
A
HOH
319
2
HOH
HOH
342
A
HOH
320
2
HOH
HOH
343
A
n
1
1
A
GLU
2
n
2
GLU
2
A
PRO
3
n
3
PRO
3
A
SER
4
n
4
SER
4
A
VAL
5
n
5
VAL
5
A
GLN
6
n
6
GLN
6
A
VAL
7
n
7
VAL
7
A
GLY
8
n
8
GLY
8
A
TYR
9
n
9
TYR
9
A
SER
10
n
10
SER
10
A
PRO
11
n
11
PRO
11
A
GLU
12
n
12
GLU
12
A
GLY
13
n
13
GLY
13
A
SER
14
n
14
SER
14
A
ALA
15
n
15
ALA
15
A
ARG
16
n
16
ARG
16
A
VAL
17
n
17
VAL
17
A
LEU
18
n
18
LEU
18
A
VAL
19
n
19
VAL
19
A
LEU
20
n
20
LEU
20
A
SER
21
n
21
SER
21
A
ALA
22
n
22
ALA
22
A
ILE
23
n
23
ILE
23
A
ASP
24
n
24
ASP
24
A
SER
25
n
25
SER
25
A
ALA
26
n
26
ALA
26
A
LYS
27
n
27
LYS
27
A
THR
28
n
28
THR
28
A
SER
29
n
29
SER
29
A
ILE
30
n
30
ILE
30
A
ARG
31
n
31
ARG
31
A
MET
32
n
32
MET
32
A
MET
33
n
33
MET
33
A
ALA
34
n
34
ALA
34
A
TYR
35
n
35
TYR
35
A
SER
36
n
36
SER
36
A
PHE
37
n
37
PHE
37
A
THR
38
n
38
THR
38
A
ALA
39
n
39
ALA
39
A
PRO
40
n
40
PRO
40
A
ASP
41
n
41
ASP
41
A
ILE
42
n
42
ILE
42
A
MET
43
n
43
MET
43
A
LYS
44
n
44
LYS
44
A
ALA
45
n
45
ALA
45
A
LEU
46
n
46
LEU
46
A
VAL
47
n
47
VAL
47
A
ALA
48
n
48
ALA
48
A
ALA
49
n
49
ALA
49
A
LYS
50
n
50
LYS
50
A
LYS
51
n
51
LYS
51
A
ARG
52
n
52
ARG
52
A
GLY
53
n
53
GLY
53
A
VAL
54
n
54
VAL
54
A
ASP
55
n
55
ASP
55
A
VAL
56
n
56
VAL
56
A
LYS
57
n
57
LYS
57
A
ILE
58
n
58
ILE
58
A
VAL
59
n
59
VAL
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ARG
63
n
63
ARG
63
A
GLY
64
n
64
GLY
64
A
ASN
65
n
65
ASN
65
A
THR
66
n
66
THR
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
ALA
69
n
69
ALA
69
A
SER
70
n
70
SER
70
A
ILE
71
n
71
ILE
71
A
ALA
72
n
72
ALA
72
A
ALA
73
n
73
ALA
73
A
MET
74
n
74
MET
74
A
ASN
75
n
75
ASN
75
A
TYR
76
n
76
TYR
76
A
ILE
77
n
77
ILE
77
A
ALA
78
n
78
ALA
78
A
ASN
79
n
79
ASN
79
A
SER
80
n
80
SER
80
A
GLY
81
n
81
GLY
81
A
ILE
82
n
82
ILE
82
A
PRO
83
n
83
PRO
83
A
LEU
84
n
84
LEU
84
A
ARG
85
n
85
ARG
85
A
THR
86
n
86
THR
86
A
ASP
87
n
87
ASP
87
A
SER
88
n
88
SER
88
A
ASN
89
n
89
ASN
89
A
PHE
90
n
90
PHE
90
A
PRO
91
n
91
PRO
91
A
ILE
92
n
92
ILE
92
A
GLN
93
n
93
GLN
93
A
HIS
94
n
94
HIS
94
A
ASP
95
n
95
ASP
95
A
LYS
96
n
96
LYS
96
A
VAL
97
n
97
VAL
97
A
ILE
98
n
98
ILE
98
A
ILE
99
n
99
ILE
99
A
VAL
100
n
100
VAL
100
A
ASP
101
n
101
ASP
101
A
ASN
102
n
102
ASN
102
A
VAL
103
n
103
VAL
103
A
THR
104
n
104
THR
104
A
VAL
105
n
105
VAL
105
A
GLU
106
n
106
GLU
106
A
THR
107
n
107
THR
107
A
GLY
108
n
108
GLY
108
A
SER
109
n
109
SER
109
A
PHE
110
n
110
PHE
110
A
ASN
111
n
111
ASN
111
A
PHE
112
n
112
PHE
112
A
THR
113
n
113
THR
113
A
LYS
114
n
114
LYS
114
A
ALA
115
n
115
ALA
115
A
ALA
116
n
116
ALA
116
A
GLU
117
n
117
GLU
117
A
THR
118
n
118
THR
118
A
LYS
119
n
119
LYS
119
A
ASN
120
n
120
ASN
120
A
SER
121
n
121
SER
121
A
GLU
122
n
122
GLU
122
A
ASN
123
n
123
ASN
123
A
ALA
124
n
124
ALA
124
A
VAL
125
n
125
VAL
125
A
VAL
126
n
126
VAL
126
A
ILE
127
n
127
ILE
127
A
TRP
128
n
128
TRP
128
A
ASN
129
n
129
ASN
129
A
MET
130
n
130
MET
130
A
PRO
131
n
131
PRO
131
A
LYS
132
n
132
LYS
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
GLU
135
n
135
GLU
135
A
SER
136
n
136
SER
136
A
PHE
137
n
137
PHE
137
A
LEU
138
n
138
LEU
138
A
GLU
139
n
139
GLU
139
A
HIS
140
n
140
HIS
140
A
TRP
141
n
141
TRP
141
A
GLN
142
n
142
GLN
142
A
ASP
143
n
143
ASP
143
A
ARG
144
n
144
ARG
144
A
TRP
145
n
145
TRP
145
A
ASN
146
n
146
ASN
146
A
GLN
147
n
147
GLN
147
A
GLY
148
n
148
GLY
148
A
ARG
149
n
149
ARG
149
A
ASP
150
n
150
ASP
150
A
TYR
151
n
151
TYR
151
A
ARG
152
n
152
ARG
152
A
SER
153
n
153
SER
153
A
n
154
154
A
n
155
155
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
2400
-10
11690
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
4
A
O
SER
4
A
N
TRP
128
A
N
TRP
128
A
O
VAL
125
A
O
VAL
125
A
N
THR
107
A
N
THR
107
A
O
THR
104
A
O
THR
104
A
N
VAL
100
A
N
VAL
100
A
O
VAL
97
A
O
VAL
97
A
N
MET
33
A
N
MET
33
A
O
ILE
30
A
O
ILE
30
A
N
ASP
55
A
N
ASP
55
A
O
ILE
58
A
O
ILE
58
A
N
PRO
83
A
N
PRO
83
1
A
VAL
1
A
VAL
1
1
Y
1
A
SER
154
A
SER
154
1
Y
1
A
TYR
155
A
TYR
155
1
Y
1
A
THR
28
-130.48
-44.51
1
A
TYR
35
-97.83
-112.41
1
A
ASN
102
56.49
12.92
1
A
VAL
103
-140.80
-9.01
PROTEIN_REP.PARAM
TOPHCSDX.PRO
PARAM11.WAT
TOPH19.PEP
TOPH11.WAT
0.2500000
0.1930000
0.1930000
2.0
8.0
1320
13112
10.06
95.8
RANDOM
1
THROUGHOUT
0.0
MAD
2.0
8.0
188
1369
0
0
1181
0.009
1.61
25.72
0.757
0.2344000
0.2179000
2.15
136
1390
8
10.3
91.48
2.0
16.4
1BYR
13546
0
0.390
1
15
3.1
97
2.0
2.15
5.8
0.082
1
3
96
model building
CCP4
refinement
X-PLOR
3.851
phasing
CCP4
CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM
1
N
N
2
N
N
A
SER
14
A
SER
14
HELX_P
A
SER
25
A
SER
25
1
1
12
A
PRO
40
A
PRO
40
HELX_P
A
LYS
51
A
LYS
51
1
2
12
A
ARG
68
A
ARG
68
HELX_P
A
SER
80
A
SER
80
1
3
13
A
LYS
114
A
LYS
114
HELX_P
A
THR
118
A
THR
118
1
4
5
A
PRO
131
A
PRO
131
HELX_P
A
GLN
147
A
GLN
147
1
5
17
ENDONUCLEASE
ENDONUCLEASE, PHOSPHODIESTERASE
A
SER
10
A
SER
10
1
A
PRO
11
A
PRO
11
-1.18
Q46707_ECOLI
UNP
1
Q46707
23
177
1BYR
1
155
Q46707
A
1
1
155
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
SER
4
A
SER
4
A
SER
10
A
SER
10
A
GLU
122
A
GLU
122
A
TRP
128
A
TRP
128
A
THR
104
A
THR
104
A
GLY
108
A
GLY
108
A
VAL
97
A
VAL
97
A
VAL
100
A
VAL
100
A
SER
29
A
SER
29
A
ALA
34
A
ALA
34
A
ASP
55
A
ASP
55
A
ASP
61
A
ASP
61
A
PRO
83
A
PRO
83
A
ASP
87
A
ASP
87
RESIDUES FROM BOTH MONOMERS CREATE THE ACTIVE SITE.
Author
3
A
HIS
94
A
HIS
94
3
1_555
A
LYS
96
A
LYS
96
3
1_555
A
ASN
111
A
ASN
111
3
1_555
96
P 43 21 2