1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Szyperski, T.
Goette, M.
Billeter, M.
Perola, E.
Cellai, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
N
C
N
84
R
C
N
85
N
N
N
86
N
C
N
87
N
O
N
88
N
N
N
89
N
C
N
90
N
N
N
91
N
C
N
92
N
C
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
O
N
108
N
P
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
C
N
113
R
C
N
114
N
O
N
115
S
C
N
116
N
O
N
117
N
C
N
118
R
C
Y
119
N
N
Y
120
N
C
Y
121
N
N
Y
122
N
C
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
N
Y
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
N
156
N
N
N
157
N
C
N
158
N
O
N
159
N
N
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
O
N
181
N
P
N
182
N
O
N
183
N
O
N
184
N
O
N
185
N
C
N
186
R
C
N
187
N
O
N
188
S
C
N
189
N
O
N
190
R
C
N
191
N
O
N
192
R
C
Y
193
N
N
Y
194
N
C
Y
195
N
N
Y
196
N
C
N
197
N
C
N
198
N
O
N
199
N
N
N
200
N
C
N
201
N
N
N
202
N
N
Y
203
N
C
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
O
N
219
N
P
N
220
N
O
N
221
N
O
N
222
N
O
N
223
N
C
N
224
R
C
N
225
N
O
N
226
S
C
N
227
N
O
N
228
R
C
N
229
N
O
N
230
R
C
N
231
N
N
N
232
N
C
N
233
N
O
N
234
N
N
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
Y
134
N
sing
Y
135
N
sing
Y
136
N
doub
N
137
N
sing
Y
138
N
sing
N
139
N
sing
Y
140
N
doub
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
Y
211
N
sing
Y
212
N
sing
Y
213
N
doub
N
214
N
sing
Y
215
N
sing
N
216
N
sing
Y
217
N
doub
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
13
343
355
10.1023/A:1008350604637
10353196
NMR structure of the chimeric hybrid duplex r(gcaguggc).r(gcca)d(CTGC) comprising the tRNA-DNA junction formed during initiation of HIV-1 reverse transcription.
1999
10.2210/pdb1byx/pdb
pdb_00001byx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2581.601
RNA (5'-R(*GP*CP*AP*GP*UP*GP*GP*C)-3')
1
syn
polymer
CHIMERIC HYBRID RNA/RNA-DNA DUPLEX
2451.580
DNA/RNA (5'-R(*GP*CP*CP*A)-D(P*CP*TP*GP*C)-3')
1
syn
polymer
no
no
GCAGUGGC
GCAGUGGC
A
polyribonucleotide
no
no
GCCA(DC)(DT)(DG)(DC)
GCCACTGC
B
polydeoxyribonucleotide/polyribonucleotide hybrid
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-8.025
1
19
A
2
B
107
-3.366
A_C2:DG107_B
1
1.032
-0.139
-0.195
-0.031
2.416
1
20
A
3
B
106
-0.019
A_A3:DT106_B
2
-12.101
-0.288
0.760
-0.280
-10.188
1
19
A
4
B
105
-1.231
A_G4:DC105_B
3
-20.854
0.145
-0.094
-0.102
-6.741
1
20
A
5
B
104
-2.632
A_U5:A104_B
4
-16.433
-0.382
-0.069
-0.034
-8.484
1
19
A
6
B
103
-6.816
A_G6:C103_B
5
1.582
0.584
-0.041
-0.046
-0.608
1
19
A
7
B
102
-2.104
A_G7:C102_B
6
-11.132
0.101
-0.087
-0.049
-5.691
A
8
B
101
-161.699
A_C8:G101_B
7
-5.285
-1.530
2.442
2.367
3.554
29.927
A
A
2
3
-23.827
B
B
107
106
3.456
-11.950
1.121
-1.315
AA_C2A3:DT106DG107_BB
1
-3.241
6.462
27.299
0.233
-2.925
4.287
37.759
A
A
3
4
-10.771
B
B
106
105
4.137
-6.854
0.040
-1.972
AA_A3G4:DC105DT106_BB
2
10.095
-15.864
35.802
-1.875
1.665
3.402
34.794
A
A
4
5
-10.926
B
B
105
104
3.259
-6.498
-0.424
-1.099
AA_G4U5:A104DC105_BB
3
0.155
-0.260
34.200
-0.820
0.734
3.079
32.986
A
A
5
6
9.366
B
B
104
103
3.379
5.294
0.056
-1.601
AA_U5G6:C103A104_BB
4
-1.928
3.411
32.515
-3.713
-0.424
2.469
31.204
A
A
6
7
19.815
B
B
103
102
3.127
10.454
0.661
-1.593
AA_G6G7:C102C103_BB
5
2.078
-3.940
29.370
-4.717
-0.881
-0.336
175.750
A
A
7
8
70.510
B
B
102
101
-0.085
140.513
-4.199
1.474
AA_G7C8:G101C102_BB
6
85.663
-42.986
147.943
0.763
2.086
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
1999-10-20
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
RCSB
1998-10-20
REL
REL
THE RNA:RNA-DNA CHIMERIC HYBRID DUPLEX WAS CHEMICALLY SYNTHESIZED FROM THE HUMAN IMMUNODIFICIENCY VIRUS TYPE 1 (HIV-1). THE DUPLEX IS FORMED DURING THE INITIATION OF (-)DNA STRAND SYNTHESIS IN HIV-1 REPLICATION.
sample
THE 20 STRUCTURES ARE ENERGY-MINIMIZED WITH THE AMBER FORCE FIELD USING THE
PROGRAM OPAL
DYANA TARGET FUNCTION
100
20
NOESY
TOCSY
DQF-COSY
E H-P HETCOR
H-C COSY
7.0
1
atm
298
K
REFINEMENT DETAILS ARE DESCRIBED IN THE JRNL CITATION ABOVE
distance geometry
GUNTERT,WUTHRICH
refinement
DYANA
structure solution
DYANA
500
Bruker
AMX
600
Bruker
AMX
750
Varian
UNITY
G
1
n
1
G
1
A
C
2
n
2
C
2
A
A
3
n
3
A
3
A
G
4
n
4
G
4
A
U
5
n
5
U
5
A
G
6
n
6
G
6
A
G
7
n
7
G
7
A
C
8
n
8
C
8
A
G
101
n
1
G
101
B
C
102
n
2
C
102
B
C
103
n
3
C
103
B
A
104
n
4
A
104
B
C
105
n
5
DC
105
B
T
106
n
6
DT
106
B
G
107
n
7
DG
107
B
C
108
n
8
DC
108
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
OP2
HO3'
G
C
7
8
1.56
15
B
B
HO5'
OP2
G
C
101
102
1.59
18
A
A
OP2
HO3'
G
C
7
8
1.54
1
A
G
4
0.068
SIDE CHAIN
1
A
U
5
0.083
SIDE CHAIN
1
A
G
7
0.083
SIDE CHAIN
1
B
G
101
0.061
SIDE CHAIN
1
B
C
102
0.082
SIDE CHAIN
1
B
DG
107
0.101
SIDE CHAIN
2
A
G
4
0.101
SIDE CHAIN
2
A
U
5
0.109
SIDE CHAIN
2
A
G
7
0.111
SIDE CHAIN
2
B
C
103
0.058
SIDE CHAIN
2
B
A
104
0.085
SIDE CHAIN
3
A
A
3
0.106
SIDE CHAIN
3
A
G
4
0.089
SIDE CHAIN
3
A
U
5
0.093
SIDE CHAIN
3
A
C
8
0.072
SIDE CHAIN
3
B
C
102
0.094
SIDE CHAIN
3
B
A
104
0.087
SIDE CHAIN
4
A
C
2
0.068
SIDE CHAIN
4
A
G
4
0.107
SIDE CHAIN
4
B
G
101
0.046
SIDE CHAIN
4
B
C
102
0.092
SIDE CHAIN
4
B
DT
106
0.102
SIDE CHAIN
5
A
G
1
0.071
SIDE CHAIN
5
A
G
4
0.128
SIDE CHAIN
5
A
U
5
0.084
SIDE CHAIN
5
A
C
8
0.081
SIDE CHAIN
5
B
G
101
0.107
SIDE CHAIN
5
B
A
104
0.071
SIDE CHAIN
5
B
DC
105
0.097
SIDE CHAIN
5
B
DT
106
0.073
SIDE CHAIN
5
B
DC
108
0.105
SIDE CHAIN
6
A
G
1
0.071
SIDE CHAIN
6
A
G
4
0.146
SIDE CHAIN
6
A
U
5
0.109
SIDE CHAIN
6
B
G
101
0.060
SIDE CHAIN
6
B
C
103
0.145
SIDE CHAIN
6
B
A
104
0.073
SIDE CHAIN
7
A
C
2
0.187
SIDE CHAIN
7
A
G
4
0.066
SIDE CHAIN
7
A
U
5
0.083
SIDE CHAIN
7
B
G
101
0.144
SIDE CHAIN
7
B
C
102
0.077
SIDE CHAIN
7
B
DC
105
0.073
SIDE CHAIN
7
B
DT
106
0.095
SIDE CHAIN
7
B
DG
107
0.094
SIDE CHAIN
8
A
G
1
0.067
SIDE CHAIN
8
A
C
2
0.101
SIDE CHAIN
8
A
G
4
0.124
SIDE CHAIN
8
A
U
5
0.081
SIDE CHAIN
8
B
A
104
0.088
SIDE CHAIN
8
B
DG
107
0.064
SIDE CHAIN
8
B
DC
108
0.172
SIDE CHAIN
9
A
G
1
0.093
SIDE CHAIN
9
A
G
4
0.095
SIDE CHAIN
9
A
U
5
0.134
SIDE CHAIN
9
A
G
7
0.077
SIDE CHAIN
9
B
C
103
0.062
SIDE CHAIN
9
B
DT
106
0.090
SIDE CHAIN
9
B
DG
107
0.082
SIDE CHAIN
9
B
DC
108
0.106
SIDE CHAIN
10
A
G
1
0.075
SIDE CHAIN
10
A
A
3
0.083
SIDE CHAIN
10
A
G
7
0.056
SIDE CHAIN
10
B
G
101
0.088
SIDE CHAIN
10
B
A
104
0.060
SIDE CHAIN
10
B
DC
108
0.111
SIDE CHAIN
11
A
G
1
0.079
SIDE CHAIN
11
A
A
3
0.108
SIDE CHAIN
11
A
G
7
0.138
SIDE CHAIN
11
B
G
101
0.094
SIDE CHAIN
11
B
C
102
0.085
SIDE CHAIN
11
B
DT
106
0.088
SIDE CHAIN
11
B
DC
108
0.071
SIDE CHAIN
12
A
G
1
0.152
SIDE CHAIN
12
A
A
3
0.100
SIDE CHAIN
12
A
G
4
0.095
SIDE CHAIN
12
A
U
5
0.114
SIDE CHAIN
12
A
G
6
0.064
SIDE CHAIN
12
A
C
8
0.126
SIDE CHAIN
12
B
G
101
0.100
SIDE CHAIN
12
B
A
104
0.084
SIDE CHAIN
12
B
DC
108
0.141
SIDE CHAIN
13
A
G
1
0.195
SIDE CHAIN
13
A
A
3
0.096
SIDE CHAIN
13
A
G
4
0.119
SIDE CHAIN
13
A
U
5
0.102
SIDE CHAIN
13
A
G
7
0.059
SIDE CHAIN
13
A
C
8
0.154
SIDE CHAIN
13
B
G
101
0.092
SIDE CHAIN
13
B
C
102
0.063
SIDE CHAIN
13
B
A
104
0.059
SIDE CHAIN
13
B
DC
105
0.079
SIDE CHAIN
13
B
DT
106
0.101
SIDE CHAIN
13
B
DG
107
0.049
SIDE CHAIN
13
B
DC
108
0.070
SIDE CHAIN
14
A
G
4
0.127
SIDE CHAIN
14
A
U
5
0.095
SIDE CHAIN
14
B
C
102
0.101
SIDE CHAIN
14
B
A
104
0.079
SIDE CHAIN
14
B
DT
106
0.094
SIDE CHAIN
15
A
G
4
0.125
SIDE CHAIN
15
A
U
5
0.107
SIDE CHAIN
15
B
G
101
0.114
SIDE CHAIN
15
B
DC
105
0.066
SIDE CHAIN
16
A
G
1
0.079
SIDE CHAIN
16
A
A
3
0.060
SIDE CHAIN
16
A
G
4
0.128
SIDE CHAIN
16
A
U
5
0.082
SIDE CHAIN
16
A
G
7
0.063
SIDE CHAIN
16
B
G
101
0.137
SIDE CHAIN
16
B
C
102
0.065
SIDE CHAIN
16
B
C
103
0.074
SIDE CHAIN
16
B
DG
107
0.056
SIDE CHAIN
16
B
DC
108
0.069
SIDE CHAIN
17
A
C
2
0.073
SIDE CHAIN
17
A
G
4
0.122
SIDE CHAIN
17
A
G
6
0.059
SIDE CHAIN
17
A
G
7
0.078
SIDE CHAIN
17
B
A
104
0.092
SIDE CHAIN
17
B
DT
106
0.094
SIDE CHAIN
18
A
G
1
0.076
SIDE CHAIN
18
A
A
3
0.111
SIDE CHAIN
18
A
G
4
0.129
SIDE CHAIN
18
A
U
5
0.128
SIDE CHAIN
18
A
G
7
0.075
SIDE CHAIN
18
B
G
101
0.059
SIDE CHAIN
18
B
A
104
0.071
SIDE CHAIN
18
B
DC
108
0.083
SIDE CHAIN
19
A
G
1
0.083
SIDE CHAIN
19
A
G
4
0.122
SIDE CHAIN
19
A
G
7
0.113
SIDE CHAIN
19
B
A
104
0.065
SIDE CHAIN
19
B
DT
106
0.082
SIDE CHAIN
19
B
DG
107
0.058
SIDE CHAIN
19
B
DC
108
0.129
SIDE CHAIN
20
A
G
1
0.120
SIDE CHAIN
20
A
G
4
0.094
SIDE CHAIN
20
A
U
5
0.102
SIDE CHAIN
20
A
G
7
0.056
SIDE CHAIN
20
B
G
101
0.137
SIDE CHAIN
20
B
DT
106
0.084
SIDE CHAIN
20
B
DC
108
0.109
SIDE CHAIN
1
6.84
0.70
108.50
115.34
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
1
4.21
0.70
108.50
112.71
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
1
5.00
0.70
108.50
113.50
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
1
4.20
0.70
108.50
112.70
B
B
B
O4'
C1'
N9
G
G
G
101
101
101
N
1
6.85
0.70
108.50
115.35
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
1
4.85
0.70
108.50
113.35
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
1
6.57
0.30
108.30
114.87
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
1
4.04
0.30
108.30
112.34
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
1
4.01
0.30
108.30
112.31
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
1
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
2
4.89
0.80
101.50
106.39
A
A
A
C3'
C2'
C1'
C
C
C
2
2
2
N
2
4.82
0.70
108.50
113.32
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
2
3.81
0.60
118.90
122.71
A
A
A
N1
C2
O2
C
C
C
2
2
2
N
2
4.87
0.70
108.50
113.37
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
2
4.66
0.70
108.50
113.16
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
2
5.49
0.70
108.50
113.99
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
2
6.23
0.30
108.30
114.53
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
2
4.03
0.30
108.30
112.33
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
2
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
2
6.07
0.30
108.30
114.37
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
3
4.84
0.70
108.50
113.34
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
3
-4.24
0.70
119.90
115.66
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
3
8.08
0.70
108.50
116.58
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
3
4.36
0.70
108.50
112.86
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
3
5.10
0.70
108.50
113.60
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
3
3.94
0.30
108.30
112.24
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
3
5.13
0.30
108.30
113.43
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
3
1.95
0.30
108.30
110.25
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
4
-4.94
0.70
119.90
114.96
A
A
A
N3
C2
N2
G
G
G
1
1
1
N
4
6.80
0.70
108.50
115.30
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
4
4.61
0.70
108.50
113.11
A
A
A
O4'
C1'
N9
A
A
A
3
3
3
N
4
4.20
0.70
108.50
112.70
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
4
5.76
0.90
109.80
115.56
A
A
A
C5'
C4'
O4'
G
G
G
6
6
6
N
4
3.89
0.60
118.90
122.79
B
B
B
N1
C2
O2
C
C
C
102
102
102
N
4
5.14
0.30
108.30
113.44
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
4
5.69
0.30
108.30
113.99
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
4
5.48
0.30
108.30
113.78
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
4
3.21
0.30
108.30
111.51
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
4
3.75
0.60
118.90
122.65
B
B
B
N1
C2
O2
DC
DC
DC
108
108
108
N
5
5.16
0.70
108.50
113.66
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
5
5.74
0.90
109.80
115.54
A
A
A
C5'
C4'
O4'
A
A
A
3
3
3
N
5
6.01
0.70
108.50
114.51
A
A
A
O4'
C1'
N9
G
G
G
4
4
4
N
5
4.29
0.70
108.50
112.79
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
5
5.77
0.70
108.50
114.27
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
5
5.43
0.70
108.50
113.93
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
5
-4.29
0.70
102.20
97.91
B
B
B
C4'
C3'
C2'
DC
DC
DC
105
105
105
N
5
3.88
0.30
108.30
112.18
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
5
5.00
0.30
108.30
113.30
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
5
-3.76
0.60
122.90
119.14
B
B
B
C6
C5
C7
DT
DT
DT
106
106
106
N
5
3.51
0.30
108.30
111.81
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
5
5.86
0.30
108.30
114.16
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
6
6.16
0.70
108.50
114.66
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
6
-4.58
0.70
119.90
115.32
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
6
4.61
0.70
108.50
113.11
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
6
4.87
0.30
108.30
113.17
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
6
3.11
0.30
108.30
111.41
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
6
4.28
0.30
108.30
112.58
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
6
5.44
0.30
108.30
113.74
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
7
6.00
0.70
108.50
114.50
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
7
4.78
0.60
118.90
123.68
A
A
A
N1
C2
O2
C
C
C
2
2
2
N
7
4.35
0.70
108.50
112.85
A
A
A
O4'
C1'
N9
G
G
G
4
4
4
N
7
4.51
0.70
108.50
113.01
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
7
5.67
0.70
108.50
114.17
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
7
4.55
0.70
108.50
113.05
B
B
B
O4'
C1'
N9
A
A
A
104
104
104
N
7
5.37
0.30
108.30
113.67
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
7
3.90
0.30
108.30
112.20
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
7
-3.78
0.60
122.90
119.12
B
B
B
C6
C5
C7
DT
DT
DT
106
106
106
N
7
3.38
0.30
108.30
111.68
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
7
5.18
0.30
108.30
113.48
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
7
3.93
0.60
118.90
122.83
B
B
B
N1
C2
O2
DC
DC
DC
108
108
108
N
7
-4.41
0.70
121.90
117.49
B
B
B
N3
C2
O2
DC
DC
DC
108
108
108
N
8
6.11
0.70
108.50
114.61
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
8
5.80
0.90
109.80
115.60
A
A
A
C5'
C4'
O4'
A
A
A
3
3
3
N
8
5.37
0.70
108.50
113.87
A
A
A
O4'
C1'
N9
G
G
G
4
4
4
N
8
5.01
0.70
108.50
113.51
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
8
5.79
0.30
108.30
114.09
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
8
6.33
0.30
108.30
114.63
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
8
3.61
0.30
108.30
111.91
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
8
7.18
0.30
108.30
115.48
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
9
5.48
0.70
108.50
113.98
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
9
6.65
0.90
109.80
116.45
A
A
A
C5'
C4'
O4'
A
A
A
3
3
3
N
9
4.48
0.70
108.50
112.98
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
9
5.53
0.70
108.50
114.03
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
9
5.21
0.70
108.50
113.71
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
9
5.13
0.30
108.30
113.43
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
9
4.89
0.30
108.30
113.19
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
9
5.78
0.30
108.30
114.08
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
9
6.06
0.30
108.30
114.36
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
9
-4.20
0.70
121.90
117.70
B
B
B
N3
C2
O2
DC
DC
DC
108
108
108
N
10
4.56
0.70
108.50
113.06
A
A
A
O4'
C1'
N9
G
G
G
1
1
1
N
10
-4.26
0.70
119.90
115.64
A
A
A
N3
C2
N2
G
G
G
1
1
1
N
10
6.18
0.70
108.50
114.68
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
10
5.09
0.70
108.50
113.59
A
A
A
O4'
C1'
N9
G
G
G
4
4
4
N
10
-4.42
0.70
119.90
115.48
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
10
4.29
0.70
108.50
112.79
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
10
4.47
0.70
108.50
112.97
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
10
6.70
0.70
108.50
115.20
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
10
5.16
0.70
108.50
113.66
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
10
-4.25
0.70
121.90
117.65
B
B
B
N3
C2
O2
C
C
C
103
103
103
N
10
5.80
0.30
108.30
114.10
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
10
4.79
0.30
108.30
113.09
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
10
-3.85
0.60
122.90
119.05
B
B
B
C6
C5
C7
DT
DT
DT
106
106
106
N
10
3.59
0.30
108.30
111.89
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
11
4.44
0.70
108.50
112.94
A
A
A
O4'
C1'
N9
G
G
G
1
1
1
N
11
5.74
0.70
108.50
114.24
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
11
4.06
0.60
118.90
122.96
A
A
A
N1
C2
O2
C
C
C
2
2
2
N
11
-4.28
0.70
121.90
117.62
A
A
A
N3
C2
O2
C
C
C
2
2
2
N
11
4.85
0.70
108.50
113.35
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
11
5.93
0.90
109.80
115.73
A
A
A
C5'
C4'
O4'
G
G
G
7
7
7
N
11
4.38
0.70
108.50
112.88
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
11
4.66
0.70
108.50
113.16
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
11
4.79
0.30
108.30
113.09
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
11
4.85
0.30
108.30
113.15
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
11
-3.79
0.60
122.90
119.11
B
B
B
C6
C5
C7
DT
DT
DT
106
106
106
N
11
4.60
0.30
108.30
112.90
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
11
4.36
0.30
108.30
112.66
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
12
5.89
0.70
108.50
114.39
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
12
-4.99
0.70
119.90
114.91
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
12
4.51
0.70
108.50
113.01
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
12
4.59
0.70
108.50
113.09
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
12
5.57
0.70
108.50
114.07
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
12
5.02
0.70
108.50
113.52
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
12
4.43
0.70
108.50
112.93
B
B
B
O4'
C1'
N9
A
A
A
104
104
104
N
12
4.03
0.30
108.30
112.33
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
12
5.62
0.30
108.30
113.92
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
12
4.34
0.30
108.30
112.64
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
12
6.50
0.30
108.30
114.80
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
13
4.15
0.60
118.90
123.05
A
A
A
N1
C2
O2
C
C
C
2
2
2
N
13
7.00
0.70
108.50
115.50
A
A
A
O4'
C1'
N9
G
G
G
4
4
4
N
13
-4.25
0.70
119.90
115.65
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
13
5.06
0.70
108.50
113.56
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
13
4.22
0.70
108.50
112.72
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
13
5.51
0.70
108.50
114.01
B
B
B
O4'
C1'
N9
G
G
G
101
101
101
N
13
5.29
0.70
108.50
113.79
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
13
4.75
0.70
108.50
113.25
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
13
3.20
0.30
108.30
111.50
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
13
3.90
0.30
108.30
112.20
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
13
6.31
0.30
108.30
114.61
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
14
6.55
0.70
108.50
115.05
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
14
-4.44
0.70
121.90
117.46
A
A
A
N3
C2
O2
C
C
C
8
8
8
N
14
4.32
0.70
108.50
112.82
B
B
B
O4'
C1'
N9
G
G
G
101
101
101
N
14
6.50
0.70
108.50
115.00
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
14
5.55
0.30
108.30
113.85
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
14
4.29
0.30
108.30
112.59
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
14
3.62
0.30
108.30
111.92
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
14
3.28
0.30
108.30
111.58
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
15
4.66
0.70
108.50
113.16
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
15
5.84
0.90
109.80
115.64
A
A
A
C5'
C4'
O4'
A
A
A
3
3
3
N
15
6.82
0.70
108.50
115.32
A
A
A
O4'
C1'
N9
G
G
G
4
4
4
N
15
5.57
0.70
108.50
114.07
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
15
6.16
0.70
108.50
114.66
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
15
-4.36
0.70
102.20
97.84
B
B
B
C4'
C3'
C2'
DC
DC
DC
105
105
105
N
15
3.85
0.30
108.30
112.15
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
15
6.24
0.30
108.30
114.54
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
15
3.30
0.30
108.30
111.60
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
16
5.23
0.80
101.50
106.73
A
A
A
C3'
C2'
C1'
C
C
C
2
2
2
N
16
6.09
0.70
108.50
114.59
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
16
4.76
0.70
108.50
113.26
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
16
4.92
0.70
108.50
113.42
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
16
5.41
0.30
108.30
113.71
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
16
4.28
0.30
108.30
112.58
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
16
5.64
0.30
108.30
113.94
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
17
4.37
0.70
108.50
112.87
A
A
A
O4'
C1'
N9
G
G
G
1
1
1
N
17
7.46
0.70
108.50
115.96
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
17
4.94
0.70
108.50
113.44
A
A
A
O4'
C1'
N9
A
A
A
3
3
3
N
17
4.72
0.70
108.50
113.22
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
17
5.26
0.70
108.50
113.76
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
17
4.61
0.70
108.50
113.11
B
B
B
O4'
C1'
N1
C
C
C
102
102
102
N
17
-4.29
0.70
121.90
117.61
B
B
B
N3
C2
O2
C
C
C
102
102
102
N
17
5.75
0.70
108.50
114.25
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
17
5.55
0.30
108.30
113.85
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
17
3.43
0.30
108.30
111.73
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
17
2.61
0.30
108.30
110.91
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
17
1.86
0.30
108.30
110.16
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
18
5.62
0.70
108.50
114.12
A
A
A
O4'
C1'
N9
G
G
G
1
1
1
N
18
4.95
0.70
108.50
113.45
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
18
4.79
0.70
108.50
113.29
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
18
4.45
0.70
108.50
112.95
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
18
8.81
0.70
108.50
117.31
A
A
A
O4'
C1'
N9
G
G
G
7
7
7
N
18
4.79
0.70
108.50
113.29
B
B
B
O4'
C1'
N9
G
G
G
101
101
101
N
18
5.41
0.70
108.50
113.91
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
18
4.27
0.30
108.30
112.57
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
18
4.39
0.30
108.30
112.69
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
18
-3.63
0.60
122.90
119.27
B
B
B
C6
C5
C7
DT
DT
DT
106
106
106
N
18
4.43
0.30
108.30
112.73
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
18
5.37
0.30
108.30
113.67
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
19
4.89
0.70
108.50
113.39
A
A
A
O4'
C1'
N9
G
G
G
1
1
1
N
19
8.32
0.70
108.50
116.82
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
19
4.57
0.70
108.50
113.07
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
19
6.24
0.90
109.80
116.04
A
A
A
C5'
C4'
O4'
G
G
G
7
7
7
N
19
3.64
0.60
118.90
122.54
A
A
A
N1
C2
O2
C
C
C
8
8
8
N
19
3.69
0.60
118.90
122.59
B
B
B
N1
C2
O2
C
C
C
102
102
102
N
19
-4.49
0.70
121.90
117.41
B
B
B
N3
C2
O2
C
C
C
102
102
102
N
19
5.03
0.70
108.50
113.53
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
19
4.52
0.30
108.30
112.82
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
19
4.31
0.30
108.30
112.61
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
19
3.43
0.30
108.30
111.73
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
19
2.96
0.30
108.30
111.26
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
20
6.95
0.70
108.50
115.45
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
20
6.03
0.90
109.80
115.83
A
A
A
C5'
C4'
O4'
G
G
G
6
6
6
N
20
7.57
0.90
109.80
117.37
A
A
A
C5'
C4'
O4'
G
G
G
7
7
7
N
20
5.09
0.70
108.50
113.59
B
B
B
O4'
C1'
N1
C
C
C
103
103
103
N
20
7.74
0.30
108.30
116.04
B
B
B
O4'
C1'
N1
DC
DC
DC
105
105
105
N
20
4.20
0.30
108.30
112.50
B
B
B
O4'
C1'
N1
DT
DT
DT
106
106
106
N
20
4.89
0.30
108.30
113.19
B
B
B
O4'
C1'
N9
DG
DG
DG
107
107
107
N
20
2.37
0.30
108.30
110.67
B
B
B
O4'
C1'
N1
DC
DC
DC
108
108
108
N
CHIMERIC HYBRID DUPLEX R(GCAGUGGC).R(GCCA)D(CTGC) COMPRISING THE TRNA-DNA JUNCTION FORMED DURING INITIATION OF HIV-1 REVERSE TRANSCRIPTION
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
B
DG
107
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
B
DG
107
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
B
DG
107
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
A
3
A
N1
A
3
1_555
B
DT
106
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
A
3
A
N6
A
3
1_555
B
DT
106
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
B
DC
105
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
B
DC
105
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
B
DC
105
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
U
5
A
N3
U
5
1_555
B
A
104
B
N1
A
4
1_555
hydrog
WATSON-CRICK
A
U
5
A
O4
U
5
1_555
B
A
104
B
N6
A
4
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
B
C
103
B
N3
C
3
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
B
C
103
B
O2
C
3
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
B
C
103
B
N4
C
3
1_555
hydrog
WATSON-CRICK
A
G
7
A
N1
G
7
1_555
B
C
102
B
N3
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
N2
G
7
1_555
B
C
102
B
O2
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
O6
G
7
1_555
B
C
102
B
N4
C
2
1_555
hydrog
C-G PAIR
A
C
8
A
N4
C
8
1_555
B
G
101
B
O6
G
1
1_555
DNA-RNA HYBRID
RNA:RNA-DNA CHIMERIC HYBRID, RNASE H, REVERSE TRANSCRIPTASE, DNA-RNA COMPLEX, DNA-RNA HYBRID
1BYX
PDB
1
1BYX
1BYX
PDB
2
1BYX
1
8
1BYX
1
8
1BYX
A
1
1
8
101
108
1BYX
101
108
1BYX
B
2
1
8
1
P 1