1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Durant, P.C.
Davis, D.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
285
115
131
10.1006/jmbi.1998.2297
9878393
Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
1999
10.2210/pdb1bz2/pdb
pdb_00001bz2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5350.189
TRNA
ANTICODON (RESIDUES 27-43)
1
syn
polymer
no
no
UCAGACUUUUAAUCUGA
UCAGACUUUUAAUCUGA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-18.881
1
20
A
27
A
43
3.355
A_U27:A43_A
1
-6.787
0.864
0.281
-0.306
-0.732
1
19
A
28
A
42
5.797
A_C28:G42_A
2
-25.192
-0.472
-0.303
-0.183
1.413
1
20
A
29
A
41
-2.677
A_A29:U41_A
3
-14.586
-0.640
-0.014
-0.161
-10.325
1
19
A
30
A
40
-5.583
A_G30:C40_A
4
-33.850
0.535
0.287
-0.228
-10.783
1
20
A
31
A
39
-1.198
A_A31:U39_A
5
-30.636
-0.805
-0.329
-0.342
-5.587
A
32
A
38
4.593
A_C32:A38_A
6
-22.775
2.288
0.267
-0.312
1.793
26.696
A
A
27
28
20.375
A
A
43
42
2.622
9.110
-0.002
-1.726
AA_U27C28:G42A43_AA
1
7.014
-15.686
24.134
-5.426
1.304
3.393
28.079
A
A
28
29
9.999
A
A
42
41
3.624
4.803
-0.308
-1.055
AA_C28A29:U41G42_AA
2
-5.005
10.419
27.225
-3.407
-0.649
3.768
36.319
A
A
29
30
8.005
A
A
41
40
4.012
4.975
-0.022
-1.568
AA_A29G30:C40U41_AA
3
0.506
-0.814
35.985
-3.346
0.120
2.484
29.856
A
A
30
31
17.189
A
A
40
39
3.101
8.728
0.141
-1.714
AA_G30A31:U39C40_AA
4
1.555
-3.062
28.538
-4.913
0.009
2.380
43.942
A
A
31
32
14.886
A
A
39
38
2.870
11.017
0.155
-1.602
AA_A31C32:A38U39_AA
5
-3.959
5.350
42.428
-2.994
-0.514
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Data collection
1
0
1999-04-27
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
Y
BNL
1998-11-05
REL
REL
CLOSEST RMSD FROM AVERAGE STRUCTURE. STRUCTURE WAS DETERMINED USING RESTRAINTS FROM HOMONUCLEAR ROESY DATA. ASSIGNMENTS WERE MADE WITH A COMBINATION OF ROESY, NOESY, TOCSY, DQCOSY AND HETERONUCLEAR 1H-13C HMQC AND 1H-31P HETERO-TOCSY-TOCSY EXPERIMENTS.
LEAST RESTRAINT VIOLATION
35
1
NOESY
ROESY
TOCSY
HMQC
100 mM NACL
7
303
K
AMBER FORCEFIELD IN VACUO
molecular dynamics
MSI
refinement
Discover
95
structure solution
VNMR
structure solution
Felix
structure solution
Discover
500
Varian
UNITY 500
U
27
n
1
U
27
A
C
28
n
2
C
28
A
A
29
n
3
A
29
A
G
30
n
4
G
30
A
A
31
n
5
A
31
A
C
32
n
6
C
32
A
U
33
n
7
U
33
A
U
34
n
8
U
34
A
U
35
n
9
U
35
A
U
36
n
10
U
36
A
A
37
n
11
A
37
A
A
38
n
12
A
38
A
U
39
n
13
U
39
A
C
40
n
14
C
40
A
U
41
n
15
U
41
A
G
42
n
16
G
42
A
A
43
n
17
A
43
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
38
0.067
SIDE CHAIN
1
4.96
0.70
108.50
113.46
A
A
A
O4'
C1'
N9
A
A
A
29
29
29
N
1
4.83
0.70
108.50
113.33
A
A
A
O4'
C1'
N9
A
A
A
37
37
37
N
model building
VNMR
refinement
AMBER
phasing
VNMR
STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE
1
N
N
hydrog
WATSON-CRICK
A
U
27
A
N3
U
1
1_555
A
A
43
A
N1
A
17
1_555
hydrog
WATSON-CRICK
A
U
27
A
O4
U
1
1_555
A
A
43
A
N6
A
17
1_555
hydrog
WATSON-CRICK
A
C
28
A
N3
C
2
1_555
A
G
42
A
N1
G
16
1_555
hydrog
WATSON-CRICK
A
C
28
A
N4
C
2
1_555
A
G
42
A
O6
G
16
1_555
hydrog
WATSON-CRICK
A
C
28
A
O2
C
2
1_555
A
G
42
A
N2
G
16
1_555
hydrog
WATSON-CRICK
A
A
29
A
N1
A
3
1_555
A
U
41
A
N3
U
15
1_555
hydrog
WATSON-CRICK
A
A
29
A
N6
A
3
1_555
A
U
41
A
O4
U
15
1_555
hydrog
WATSON-CRICK
A
G
30
A
N1
G
4
1_555
A
C
40
A
N3
C
14
1_555
hydrog
WATSON-CRICK
A
G
30
A
N2
G
4
1_555
A
C
40
A
O2
C
14
1_555
hydrog
WATSON-CRICK
A
G
30
A
O6
G
4
1_555
A
C
40
A
N4
C
14
1_555
hydrog
WATSON-CRICK
A
A
31
A
N1
A
5
1_555
A
U
39
A
N3
U
13
1_555
hydrog
WATSON-CRICK
A
A
31
A
N6
A
5
1_555
A
U
39
A
O4
U
13
1_555
hydrog
C-A MISPAIR
A
C
32
A
N3
C
6
1_555
A
A
38
A
N6
A
12
1_555
RNA
TRNA, PSEUDOURIDINE, ANTICODON, RNA
1BZ2
PDB
1
1BZ2
27
43
1BZ2
27
43
1BZ2
A
1
1
17
1
P 1