1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Durant, P.C. Davis, D.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N O N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 285 115 131 10.1006/jmbi.1998.2297 9878393 Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. 1999 10.2210/pdb1bz2/pdb pdb_00001bz2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5350.189 TRNA ANTICODON (RESIDUES 27-43) 1 syn polymer no no UCAGACUUUUAAUCUGA UCAGACUUUUAAUCUGA A polyribonucleotide n n n n n n n n n n n n n n n n n -18.881 1 20 A 27 A 43 3.355 A_U27:A43_A 1 -6.787 0.864 0.281 -0.306 -0.732 1 19 A 28 A 42 5.797 A_C28:G42_A 2 -25.192 -0.472 -0.303 -0.183 1.413 1 20 A 29 A 41 -2.677 A_A29:U41_A 3 -14.586 -0.640 -0.014 -0.161 -10.325 1 19 A 30 A 40 -5.583 A_G30:C40_A 4 -33.850 0.535 0.287 -0.228 -10.783 1 20 A 31 A 39 -1.198 A_A31:U39_A 5 -30.636 -0.805 -0.329 -0.342 -5.587 A 32 A 38 4.593 A_C32:A38_A 6 -22.775 2.288 0.267 -0.312 1.793 26.696 A A 27 28 20.375 A A 43 42 2.622 9.110 -0.002 -1.726 AA_U27C28:G42A43_AA 1 7.014 -15.686 24.134 -5.426 1.304 3.393 28.079 A A 28 29 9.999 A A 42 41 3.624 4.803 -0.308 -1.055 AA_C28A29:U41G42_AA 2 -5.005 10.419 27.225 -3.407 -0.649 3.768 36.319 A A 29 30 8.005 A A 41 40 4.012 4.975 -0.022 -1.568 AA_A29G30:C40U41_AA 3 0.506 -0.814 35.985 -3.346 0.120 2.484 29.856 A A 30 31 17.189 A A 40 39 3.101 8.728 0.141 -1.714 AA_G30A31:U39C40_AA 4 1.555 -3.062 28.538 -4.913 0.009 2.380 43.942 A A 31 32 14.886 A A 39 38 2.870 11.017 0.155 -1.602 AA_A31C32:A38U39_AA 5 -3.959 5.350 42.428 -2.994 -0.514 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Data collection 1 0 1999-04-27 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name Y BNL 1998-11-05 REL REL CLOSEST RMSD FROM AVERAGE STRUCTURE. STRUCTURE WAS DETERMINED USING RESTRAINTS FROM HOMONUCLEAR ROESY DATA. ASSIGNMENTS WERE MADE WITH A COMBINATION OF ROESY, NOESY, TOCSY, DQCOSY AND HETERONUCLEAR 1H-13C HMQC AND 1H-31P HETERO-TOCSY-TOCSY EXPERIMENTS. LEAST RESTRAINT VIOLATION 35 1 NOESY ROESY TOCSY HMQC 100 mM NACL 7 303 K AMBER FORCEFIELD IN VACUO molecular dynamics MSI refinement Discover 95 structure solution VNMR structure solution Felix structure solution Discover 500 Varian UNITY 500 U 27 n 1 U 27 A C 28 n 2 C 28 A A 29 n 3 A 29 A G 30 n 4 G 30 A A 31 n 5 A 31 A C 32 n 6 C 32 A U 33 n 7 U 33 A U 34 n 8 U 34 A U 35 n 9 U 35 A U 36 n 10 U 36 A A 37 n 11 A 37 A A 38 n 12 A 38 A U 39 n 13 U 39 A C 40 n 14 C 40 A U 41 n 15 U 41 A G 42 n 16 G 42 A A 43 n 17 A 43 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A 38 0.067 SIDE CHAIN 1 4.96 0.70 108.50 113.46 A A A O4' C1' N9 A A A 29 29 29 N 1 4.83 0.70 108.50 113.33 A A A O4' C1' N9 A A A 37 37 37 N model building VNMR refinement AMBER phasing VNMR STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE 1 N N hydrog WATSON-CRICK A U 27 A N3 U 1 1_555 A A 43 A N1 A 17 1_555 hydrog WATSON-CRICK A U 27 A O4 U 1 1_555 A A 43 A N6 A 17 1_555 hydrog WATSON-CRICK A C 28 A N3 C 2 1_555 A G 42 A N1 G 16 1_555 hydrog WATSON-CRICK A C 28 A N4 C 2 1_555 A G 42 A O6 G 16 1_555 hydrog WATSON-CRICK A C 28 A O2 C 2 1_555 A G 42 A N2 G 16 1_555 hydrog WATSON-CRICK A A 29 A N1 A 3 1_555 A U 41 A N3 U 15 1_555 hydrog WATSON-CRICK A A 29 A N6 A 3 1_555 A U 41 A O4 U 15 1_555 hydrog WATSON-CRICK A G 30 A N1 G 4 1_555 A C 40 A N3 C 14 1_555 hydrog WATSON-CRICK A G 30 A N2 G 4 1_555 A C 40 A O2 C 14 1_555 hydrog WATSON-CRICK A G 30 A O6 G 4 1_555 A C 40 A N4 C 14 1_555 hydrog WATSON-CRICK A A 31 A N1 A 5 1_555 A U 39 A N3 U 13 1_555 hydrog WATSON-CRICK A A 31 A N6 A 5 1_555 A U 39 A O4 U 13 1_555 hydrog C-A MISPAIR A C 32 A N3 C 6 1_555 A A 38 A N6 A 12 1_555 RNA TRNA, PSEUDOURIDINE, ANTICODON, RNA 1BZ2 PDB 1 1BZ2 27 43 1BZ2 27 43 1BZ2 A 1 1 17 1 P 1