0.011509
0.006645
0.000000
0.000000
0.013289
0.000000
0.000000
0.000000
0.010100
0.00000
0.00000
0.00000
Bordo, D.
Matak, D.
Djinovic-Carugo, K.
Rosano, C.
Pesce, A.
Bolognesi, M.
Stroppolo, M.E.
Falconi, M.
Battistoni, A.
Desideri, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
86.890
86.890
99.010
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
O2 U 2
270.028
URANYL (VI) ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CU
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
U
N
185
N
O
N
186
N
O
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
N
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
S
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
O
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
R
C
N
313
N
O
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
N
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
C
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
Y
250
N
doub
Y
251
N
sing
Y
252
N
sing
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
doub
N
257
N
sing
Y
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
285
283
296
10.1006/jmbi.1998.2267
9878406
Evolutionary constraints for dimer formation in prokaryotic Cu,Zn superoxide dismutase.
1999
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
93
12774
Novel Dimeric Interface and Electrostatic Recognition in Bacterial Cu,Zn Superoxide Dismutase
1996
10.2210/pdb1bzo/pdb
pdb_00001bzo
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1997-06-02
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.0
X31
EMBL/DESY, HAMBURG
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X31
15813.854
PROTEIN (SUPEROXIDE DISMUTASE)
1.15.1.1
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
63.546
COPPER (II) ION
1
syn
non-polymer
270.028
URANYL (VI) ION
2
syn
non-polymer
18.015
water
102
nat
water
no
no
QDLTVKMTDLQTGKPVGTIELSQNKYGVVFIPELADLTPGMHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHG
FPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKGHAIMIHAGGDNHSDMPKALGGGGARVACGVIQ
QDLTVKMTDLQTGKPVGTIELSQNKYGVVFIPELADLTPGMHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHG
FPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKGHAIMIHAGGDNHSDMPKALGGGGARVACGVIQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Photobacterium
Escherichia
sample
PERIPLASMIC SPACE
658
Photobacterium leiognathi
562
Escherichia coli
1
3.4
45.88
4
PEG 8,000 25%, NACL 100 MM, SODIUM ACETATE 50 MM, PH 4, T=28C
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
1999-04-09
1
1
2007-10-16
1
2
2011-07-13
1
3
2023-12-27
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
RCSB
1998-11-02
REL
REL
ZN
ZINC ION
CU
COPPER (II) ION
IUM
URANYL (VI) ION
HOH
water
ACTIVE SITE CATALYTIC ION COORDINATED TO
HIS44, HIS46, HIS61 AND HIS118
ACTIVE SITE METAL ION COORDINATED TO
HIS61, HIS69, HIS78 AND ASP81
URANYL ATOMS USED TO SOLVE A PREVIOUS
STRUCTURE IN C2 SPACE GROUP (DATA NOT
SUBMITTED)
THE PROTEIN USED IS A TRUNCATED FORM, WITHOUT THE FIRST 22
RESIDUES
PREVIOUS MODEL OF THE PROTEIN IN SPACE GROUP C2 NOT DEPOSITED IN PDB
Other
experimental model
ZN
151
2
ZN
ZN
151
A
CU
152
3
CU
CU
152
A
IUM
502
4
IUM
IUM
502
A
IUM
559
4
IUM
IUM
559
A
HOH
501
5
HOH
HOH
501
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
HOH
512
5
HOH
HOH
512
A
HOH
513
5
HOH
HOH
513
A
HOH
514
5
HOH
HOH
514
A
HOH
515
5
HOH
HOH
515
A
HOH
516
5
HOH
HOH
516
A
HOH
517
5
HOH
HOH
517
A
HOH
518
5
HOH
HOH
518
A
HOH
519
5
HOH
HOH
519
A
HOH
520
5
HOH
HOH
520
A
HOH
521
5
HOH
HOH
521
A
HOH
522
5
HOH
HOH
522
A
HOH
523
5
HOH
HOH
523
A
HOH
524
5
HOH
HOH
524
A
HOH
525
5
HOH
HOH
525
A
HOH
526
5
HOH
HOH
526
A
HOH
527
5
HOH
HOH
527
A
HOH
528
5
HOH
HOH
528
A
HOH
529
5
HOH
HOH
529
A
HOH
530
5
HOH
HOH
530
A
HOH
531
5
HOH
HOH
531
A
HOH
532
5
HOH
HOH
532
A
HOH
533
5
HOH
HOH
533
A
HOH
534
5
HOH
HOH
534
A
HOH
535
5
HOH
HOH
535
A
HOH
536
5
HOH
HOH
536
A
HOH
537
5
HOH
HOH
537
A
HOH
538
5
HOH
HOH
538
A
HOH
539
5
HOH
HOH
539
A
HOH
540
5
HOH
HOH
540
A
HOH
541
5
HOH
HOH
541
A
HOH
542
5
HOH
HOH
542
A
HOH
543
5
HOH
HOH
543
A
HOH
544
5
HOH
HOH
544
A
HOH
545
5
HOH
HOH
545
A
HOH
546
5
HOH
HOH
546
A
HOH
547
5
HOH
HOH
547
A
HOH
548
5
HOH
HOH
548
A
HOH
549
5
HOH
HOH
549
A
HOH
550
5
HOH
HOH
550
A
HOH
551
5
HOH
HOH
551
A
HOH
552
5
HOH
HOH
552
A
HOH
553
5
HOH
HOH
553
A
HOH
554
5
HOH
HOH
554
A
HOH
555
5
HOH
HOH
555
A
HOH
556
5
HOH
HOH
556
A
HOH
557
5
HOH
HOH
557
A
HOH
558
5
HOH
HOH
558
A
HOH
560
5
HOH
HOH
560
A
HOH
561
5
HOH
HOH
561
A
HOH
562
5
HOH
HOH
562
A
HOH
563
5
HOH
HOH
563
A
HOH
564
5
HOH
HOH
564
A
HOH
565
5
HOH
HOH
565
A
HOH
566
5
HOH
HOH
566
A
HOH
567
5
HOH
HOH
567
A
HOH
568
5
HOH
HOH
568
A
HOH
569
5
HOH
HOH
569
A
HOH
570
5
HOH
HOH
570
A
HOH
571
5
HOH
HOH
571
A
HOH
572
5
HOH
HOH
572
A
HOH
573
5
HOH
HOH
573
A
HOH
574
5
HOH
HOH
574
A
HOH
575
5
HOH
HOH
575
A
HOH
576
5
HOH
HOH
576
A
HOH
577
5
HOH
HOH
577
A
HOH
578
5
HOH
HOH
578
A
HOH
579
5
HOH
HOH
579
A
HOH
580
5
HOH
HOH
580
A
HOH
581
5
HOH
HOH
581
A
HOH
582
5
HOH
HOH
582
A
HOH
583
5
HOH
HOH
583
A
HOH
584
5
HOH
HOH
584
A
HOH
585
5
HOH
HOH
585
A
HOH
586
5
HOH
HOH
586
A
HOH
587
5
HOH
HOH
587
A
HOH
588
5
HOH
HOH
588
A
HOH
589
5
HOH
HOH
589
A
HOH
590
5
HOH
HOH
590
A
HOH
591
5
HOH
HOH
591
A
HOH
592
5
HOH
HOH
592
A
HOH
593
5
HOH
HOH
593
A
HOH
594
5
HOH
HOH
594
A
HOH
595
5
HOH
HOH
595
A
HOH
596
5
HOH
HOH
596
A
HOH
597
5
HOH
HOH
597
A
HOH
598
5
HOH
HOH
598
A
HOH
599
5
HOH
HOH
599
A
HOH
600
5
HOH
HOH
600
A
HOH
601
5
HOH
HOH
601
A
HOH
602
5
HOH
HOH
602
A
HOH
603
5
HOH
HOH
603
A
HOH
604
5
HOH
HOH
604
A
GLN
2
n
1
GLN
2
A
ASP
3
n
2
ASP
3
A
LEU
4
n
3
LEU
4
A
THR
5
n
4
THR
5
A
VAL
6
n
5
VAL
6
A
LYS
7
n
6
LYS
7
A
MET
8
n
7
MET
8
A
THR
9
n
8
THR
9
A
ASP
9
n
9
A
ASP
9
A
LEU
9
n
10
B
LEU
9
A
GLN
10
n
11
GLN
10
A
THR
11
n
12
THR
11
A
GLY
12
n
13
GLY
12
A
LYS
13
n
14
LYS
13
A
PRO
14
n
15
PRO
14
A
VAL
15
n
16
VAL
15
A
GLY
16
n
17
GLY
16
A
THR
17
n
18
THR
17
A
ILE
18
n
19
ILE
18
A
GLU
19
n
20
GLU
19
A
LEU
20
n
21
LEU
20
A
SER
21
n
22
SER
21
A
GLN
22
n
23
GLN
22
A
ASN
23
n
24
ASN
23
A
LYS
24
n
25
LYS
24
A
TYR
25
n
26
TYR
25
A
GLY
26
n
27
GLY
26
A
VAL
27
n
28
VAL
27
A
VAL
28
n
29
VAL
28
A
PHE
29
n
30
PHE
29
A
ILE
30
n
31
ILE
30
A
PRO
31
n
32
PRO
31
A
GLU
32
n
33
GLU
32
A
LEU
33
n
34
LEU
33
A
ALA
34
n
35
ALA
34
A
ASP
35
n
36
ASP
35
A
LEU
36
n
37
LEU
36
A
THR
37
n
38
THR
37
A
PRO
38
n
39
PRO
38
A
GLY
39
n
40
GLY
39
A
MET
40
n
41
MET
40
A
HIS
41
n
42
HIS
41
A
GLY
42
n
43
GLY
42
A
PHE
43
n
44
PHE
43
A
HIS
44
n
45
HIS
44
A
ILE
45
n
46
ILE
45
A
HIS
46
n
47
HIS
46
A
GLN
47
n
48
GLN
47
A
ASN
48
n
49
ASN
48
A
GLY
49
n
50
GLY
49
A
SER
50
n
51
SER
50
A
CYS
51
n
52
CYS
51
A
ALA
52
n
53
ALA
52
A
SER
53
n
54
SER
53
A
SER
53
n
55
A
SER
53
A
GLU
53
n
56
B
GLU
53
A
LYS
53
n
57
C
LYS
53
A
ASP
53
n
58
D
ASP
53
A
GLY
53
n
59
E
GLY
53
A
LYS
53
n
60
F
LYS
53
A
VAL
53
n
61
G
VAL
53
A
VAL
53
n
62
H
VAL
53
A
LEU
54
n
63
LEU
54
A
GLY
55
n
64
GLY
55
A
GLY
56
n
65
GLY
56
A
ALA
57
n
66
ALA
57
A
ALA
58
n
67
ALA
58
A
GLY
59
n
68
GLY
59
A
GLY
60
n
69
GLY
60
A
HIS
61
n
70
HIS
61
A
TYR
62
n
71
TYR
62
A
ASP
63
n
72
ASP
63
A
PRO
64
n
73
PRO
64
A
GLU
65
n
74
GLU
65
A
HIS
66
n
75
HIS
66
A
THR
67
n
76
THR
67
A
ASN
68
n
77
ASN
68
A
LYS
68
n
78
A
LYS
68
A
HIS
69
n
79
HIS
69
A
GLY
70
n
80
GLY
70
A
PHE
71
n
81
PHE
71
A
PRO
72
n
82
PRO
72
A
TRP
73
n
83
TRP
73
A
THR
74
n
84
THR
74
A
ASP
75
n
85
ASP
75
A
ASP
76
n
86
ASP
76
A
ASN
77
n
87
ASN
77
A
HIS
78
n
88
HIS
78
A
LYS
79
n
89
LYS
79
A
GLY
80
n
90
GLY
80
A
ASP
81
n
91
ASP
81
A
LEU
82
n
92
LEU
82
A
PRO
83
n
93
PRO
83
A
ALA
84
n
94
ALA
84
A
LEU
85
n
95
LEU
85
A
PHE
86
n
96
PHE
86
A
VAL
87
n
97
VAL
87
A
SER
88
n
98
SER
88
A
ALA
89
n
99
ALA
89
A
ASN
90
n
100
ASN
90
A
GLY
91
n
101
GLY
91
A
LEU
92
n
102
LEU
92
A
ALA
93
n
103
ALA
93
A
THR
94
n
104
THR
94
A
ASN
95
n
105
ASN
95
A
PRO
96
n
106
PRO
96
A
VAL
97
n
107
VAL
97
A
LEU
98
n
108
LEU
98
A
ALA
99
n
109
ALA
99
A
PRO
100
n
110
PRO
100
A
ARG
101
n
111
ARG
101
A
LEU
102
n
112
LEU
102
A
THR
103
n
113
THR
103
A
LEU
107
n
114
LEU
107
A
LYS
108
n
115
LYS
108
A
GLU
109
n
116
GLU
109
A
LEU
110
n
117
LEU
110
A
LYS
111
n
118
LYS
111
A
GLY
112
n
119
GLY
112
A
HIS
113
n
120
HIS
113
A
ALA
114
n
121
ALA
114
A
ILE
115
n
122
ILE
115
A
MET
116
n
123
MET
116
A
ILE
117
n
124
ILE
117
A
HIS
118
n
125
HIS
118
A
ALA
119
n
126
ALA
119
A
GLY
120
n
127
GLY
120
A
GLY
121
n
128
GLY
121
A
ASP
122
n
129
ASP
122
A
ASN
123
n
130
ASN
123
A
HIS
124
n
131
HIS
124
A
SER
125
n
132
SER
125
A
ASP
130
n
133
ASP
130
A
MET
131
n
134
MET
131
A
PRO
132
n
135
PRO
132
A
LYS
133
n
136
LYS
133
A
ALA
134
n
137
ALA
134
A
LEU
135
n
138
LEU
135
A
GLY
136
n
139
GLY
136
A
GLY
137
n
140
GLY
137
A
GLY
138
n
141
GLY
138
A
GLY
139
n
142
GLY
139
A
ALA
140
n
143
ALA
140
A
ARG
141
n
144
ARG
141
A
VAL
142
n
145
VAL
142
A
ALA
143
n
146
ALA
143
A
CYS
144
n
147
CYS
144
A
GLY
145
n
148
GLY
145
A
VAL
146
n
149
VAL
146
A
ILE
147
n
150
ILE
147
A
GLN
148
n
151
GLN
148
A
0.19
0.26
394
5
author_defined_assembly
2
dimeric
A
HIS
44
A
ND1
HIS
45
1_555
A
CU
152
C
CU
CU
1_555
A
HIS
46
A
NE2
HIS
47
1_555
142.0
A
HIS
44
A
ND1
HIS
45
1_555
A
CU
152
C
CU
CU
1_555
A
HIS
118
A
NE2
HIS
125
1_555
101.9
A
HIS
46
A
NE2
HIS
47
1_555
A
CU
152
C
CU
CU
1_555
A
HIS
118
A
NE2
HIS
125
1_555
116.1
A
HIS
61
A
ND1
HIS
70
1_555
A
ZN
151
B
ZN
ZN
1_555
A
HIS
69
A
ND1
HIS
79
1_555
109.2
A
HIS
61
A
ND1
HIS
70
1_555
A
ZN
151
B
ZN
ZN
1_555
A
HIS
78
A
ND1
HIS
88
1_555
100.7
A
HIS
69
A
ND1
HIS
79
1_555
A
ZN
151
B
ZN
ZN
1_555
A
HIS
78
A
ND1
HIS
88
1_555
123.6
A
HIS
61
A
ND1
HIS
70
1_555
A
ZN
151
B
ZN
ZN
1_555
A
ASP
81
A
OD1
ASP
91
1_555
110.5
A
HIS
69
A
ND1
HIS
79
1_555
A
ZN
151
B
ZN
ZN
1_555
A
ASP
81
A
OD1
ASP
91
1_555
97.3
A
HIS
78
A
ND1
HIS
88
1_555
A
ZN
151
B
ZN
ZN
1_555
A
ASP
81
A
OD1
ASP
91
1_555
115.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
97
A
O
VAL
107
A
N
PHE
29
A
N
PHE
30
A
O
GLY
26
A
O
GLY
27
A
N
ASN
23
A
N
ASN
24
A
O
VAL
15
A
O
VAL
16
A
N
MET
8
A
N
MET
7
A
O
GLY
39
A
O
GLY
40
A
N
VAL
87
A
N
VAL
97
A
O
HIS
44
A
O
HIS
45
A
N
MET
116
A
N
MET
123
A
O
ILE
115
A
O
ILE
122
A
N
GLY
145
A
N
GLY
148
A
A
O
SER
53
A
O
SER
55
H
A
N
VAL
53
A
N
VAL
62
1
A
O
GLN
2
A
O
GLN
1
0
Y
1
A
CG
GLN
2
A
CG
GLN
1
0
Y
1
A
CD
GLN
2
A
CD
GLN
1
0
Y
1
A
OE1
GLN
2
A
OE1
GLN
1
0
Y
1
A
NE2
GLN
2
A
NE2
GLN
1
0
Y
1
A
CA
ASP
3
A
CA
ASP
2
0
Y
1
A
CD1
LEU
4
A
CD1
LEU
3
0
Y
1
A
CD2
LEU
4
A
CD2
LEU
3
0
Y
1
A
OG1
THR
5
A
OG1
THR
4
0
Y
1
A
CG
LYS
7
A
CG
LYS
6
0
Y
1
A
CD
LYS
7
A
CD
LYS
6
0
Y
1
A
NZ
LYS
7
A
NZ
LYS
6
0
Y
1
A
CG2
THR
9
A
CG2
THR
8
0
Y
1
A
CG
GLN
10
A
CG
GLN
11
0
Y
1
A
CG
LYS
13
A
CG
LYS
14
0
Y
1
A
CD
LYS
13
A
CD
LYS
14
0
Y
1
A
CE
LYS
13
A
CE
LYS
14
0
Y
1
A
NZ
LYS
13
A
NZ
LYS
14
0
Y
1
A
CD
GLU
19
A
CD
GLU
20
0
Y
1
A
CG
GLU
32
A
CG
GLU
33
0
Y
1
A
CD
GLN
47
A
CD
GLN
48
0
Y
1
A
OE1
GLN
47
A
OE1
GLN
48
0
Y
C
1
A
CB
LYS
53
A
CB
LYS
57
0
Y
C
1
A
CG
LYS
53
A
CG
LYS
57
0
Y
C
1
A
CD
LYS
53
A
CD
LYS
57
0
Y
C
1
A
CE
LYS
53
A
CE
LYS
57
0
Y
C
1
A
NZ
LYS
53
A
NZ
LYS
57
0
Y
F
1
A
CG
LYS
53
A
CG
LYS
60
0
Y
1
A
NE2
HIS
66
A
NE2
HIS
75
0
Y
1
A
CG
ASN
68
A
CG
ASN
77
0
Y
1
A
OD1
ASN
68
A
OD1
ASN
77
0
Y
1
A
ND2
ASN
68
A
ND2
ASN
77
0
Y
1
A
CE
LYS
79
A
CE
LYS
89
0
Y
1
A
NZ
LYS
79
A
NZ
LYS
89
0
Y
1
A
OD1
ASN
90
A
OD1
ASN
100
0
Y
1
A
CD
LYS
108
A
CD
LYS
115
0
Y
1
A
CE
LYS
108
A
CE
LYS
115
0
Y
1
A
NZ
LYS
108
A
NZ
LYS
115
0
Y
1
A
CG
LYS
111
A
CG
LYS
118
0
Y
1
A
CD
LYS
111
A
CD
LYS
118
0
Y
1
A
CE
LYS
111
A
CE
LYS
118
0
Y
1
A
NZ
LYS
111
A
NZ
LYS
118
0
Y
1
A
CE
LYS
133
A
CE
LYS
136
0
Y
1
A
CD1
ILE
147
A
CD1
ILE
150
0
Y
1
A
CG
GLN
148
A
CG
GLN
151
0
Y
1
A
CD
GLN
148
A
CD
GLN
151
0
Y
1
A
OE1
GLN
148
A
OE1
GLN
151
0
Y
1
A
NE2
GLN
148
A
NE2
GLN
151
0
Y
1
A
O1
IUM
502
D
O1
IUM
1
1
N
1
A
O2
IUM
502
D
O2
IUM
1
1
N
1
A
O1
IUM
559
E
O1
IUM
1
1
N
1
A
O2
IUM
559
E
O2
IUM
1
1
N
1
6.05
0.90
118.30
124.35
A
A
A
CB
CG
OD1
ASP
ASP
ASP
3
3
3
N
1
-6.79
0.90
118.30
111.51
A
A
A
CB
CG
OD2
ASP
ASP
ASP
3
3
3
N
D
D
D
1
-5.88
0.90
118.30
112.42
A
A
A
CB
CG
OD2
ASP
ASP
ASP
53
53
53
N
1
-8.91
1.40
112.40
103.49
A
A
A
CA
CB
CG2
THR
THR
THR
67
67
67
N
1
6.34
0.90
118.30
124.64
A
A
A
CB
CG
OD1
ASP
ASP
ASP
75
75
75
N
1
-6.27
0.90
118.30
112.03
A
A
A
CB
CG
OD2
ASP
ASP
ASP
75
75
75
N
1
7.10
0.50
120.30
127.40
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
101
101
101
N
1
-4.42
0.50
120.30
115.88
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
101
101
101
N
1
5.10
0.50
120.30
125.40
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
141
141
141
N
1
-4.27
0.50
120.30
116.03
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
141
141
141
N
B
B
1
A
A
CD
OE2
GLU
GLU
53
53
0.069
0.011
1.252
1.321
N
1
A
A
CD
OE2
GLU
GLU
65
65
0.066
0.011
1.252
1.318
N
1
A
A
O
O
HOH
HOH
596
596
0.67
1_555
4_555
1
A
A
O
O
HOH
HOH
508
508
1.83
1_555
12_555
1
A
A
O
O
HOH
HOH
542
542
2.08
1_555
18_655
1
A
ASP
76
-86.35
45.11
2.1
24.7
8469
8075
96
1
TNT BCORREL
0.0
MOLECULAR REPLACEMENT
PREVIOUS MODEL OF THE PROTEIN IN SPACE GROUP C2 NOT DEPOSITED IN PDB
TNT PROTGEO
206
0.77
2.1
24.7
102
1215
4
0
1109
0.018
1137
5.5
2.62
1533
9.5
0
0.017
27
5.5
0.018
169
25.5
4.25
1137
15.0
0.067
20
21.0
2.1
24.7
1BZO
8469
0.06
0.09
1
3
96
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
TNT
5E
THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY.
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
GLY
56
A
GLY
65
HELX_P
A
ALA
58
A
ALA
67
5
1
3
A
LYS
108
A
LYS
115
HELX_P
A
LEU
110
A
LEU
117
5
2
3
A
ALA
134
A
ALA
137
HELX_P
A
GLY
137
A
GLY
140
5
3
4
disulf
2.028
A
CYS
51
A
SG
CYS
52
1_555
A
CYS
144
A
SG
CYS
147
1_555
metalc
2.134
A
HIS
44
A
ND1
HIS
45
1_555
A
CU
152
C
CU
CU
1_555
metalc
2.045
A
HIS
46
A
NE2
HIS
47
1_555
A
CU
152
C
CU
CU
1_555
metalc
1.952
A
HIS
61
A
ND1
HIS
70
1_555
A
ZN
151
B
ZN
ZN
1_555
metalc
1.921
A
HIS
69
A
ND1
HIS
79
1_555
A
ZN
151
B
ZN
ZN
1_555
metalc
2.001
A
HIS
78
A
ND1
HIS
88
1_555
A
ZN
151
B
ZN
ZN
1_555
metalc
2.088
A
ASP
81
A
OD1
ASP
91
1_555
A
ZN
151
B
ZN
ZN
1_555
metalc
2.222
A
HIS
118
A
NE2
HIS
125
1_555
A
CU
152
C
CU
CU
1_555
OXIDOREDUCTASE
MONOMERIC CU, ZN SUPEROXIDE DISMUTASE, PROTEIN-SUBUNIT RECOGNITION, PROTEIN ELECTROSTATIC, OXIDOREDUCTASE
A
MET
131
A
MET
134
1
A
PRO
132
A
PRO
135
1.80
SODC_PHOLE
UNP
1
P00446
23
173
1BZO
2
148
P00446
A
1
1
151
1
THR
SEE REMARK 999
ILE
30
1BZO
A
P00446
UNP
53
31
4
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
97
A
VAL
107
A
ALA
99
A
ALA
109
A
GLY
26
A
GLY
27
A
LEU
33
A
LEU
34
A
PRO
14
A
PRO
15
A
ASN
23
A
ASN
24
A
ASP
3
A
ASP
2
A
THR
9
A
THR
8
A
GLY
39
A
GLY
40
A
HIS
41
A
HIS
42
A
LEU
85
A
LEU
95
A
VAL
87
A
VAL
97
A
PHE
43
A
PHE
44
A
HIS
46
A
HIS
47
A
ALA
114
A
ALA
121
A
HIS
118
A
HIS
125
A
ARG
141
A
ARG
144
A
VAL
146
A
VAL
149
A
SER
53
A
SER
55
A
LYS
53
A
LYS
57
A
C
A
LYS
53
A
LYS
60
A
VAL
53
A
VAL
62
F
H
ACTIVE SITE CU,ZN COORDINATION SPHERE. HIS44, HIS46, HIS61 AND HIS118 ARE COORDINATE TO THE COPPER CATALYTIC ION, WHILE HIS61, HIS69, HIS78 AND ASP81 ARE COORDINATED TO THE ZINC ION
Author
4
ACTIVE SITE CU,ZN COORDINATION SPHERE. HIS44, HIS46, HIS61 AND HIS118 ARE COORDINATE TO THE COPPER CATALYTIC ION, WHILE HIS61, HIS69, HIS78 AND ASP81 ARE COORDINATED TO THE ZINC ION
Author
4
BINDING SITE FOR RESIDUE ZN A 151
A
ZN
151
Software
4
BINDING SITE FOR RESIDUE CU A 152
A
CU
152
Software
4
BINDING SITE FOR RESIDUE IUM A 502
A
IUM
502
Software
1
BINDING SITE FOR RESIDUE IUM A 559
A
IUM
559
Software
1
A
HIS
44
A
HIS
45
4
1_555
A
HIS
46
A
HIS
47
4
1_555
A
HIS
61
A
HIS
70
4
1_555
A
HIS
118
A
HIS
125
4
1_555
A
HIS
61
A
HIS
70
4
1_555
A
HIS
69
A
HIS
79
4
1_555
A
HIS
78
A
HIS
88
4
1_555
A
ASP
81
A
ASP
91
4
1_555
A
HIS
61
A
HIS
70
4
1_555
A
HIS
69
A
HIS
79
4
1_555
A
HIS
78
A
HIS
88
4
1_555
A
ASP
81
A
ASP
91
4
1_555
A
HIS
44
A
HIS
45
4
1_555
A
HIS
46
A
HIS
47
4
1_555
A
HIS
61
A
HIS
70
4
1_555
A
HIS
118
A
HIS
125
4
1_555
A
ASP
76
A
ASP
86
1
1_555
A
GLU
53
A
GLU
56
B
1
1_555
155
H 3 2