0.011509 0.006645 0.000000 0.000000 0.013289 0.000000 0.000000 0.000000 0.010100 0.00000 0.00000 0.00000 Bordo, D. Matak, D. Djinovic-Carugo, K. Rosano, C. Pesce, A. Bolognesi, M. Stroppolo, M.E. Falconi, M. Battistoni, A. Desideri, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 86.890 86.890 99.010 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cu 2 63.546 COPPER (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking O2 U 2 270.028 URANYL (VI) ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CU N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N U N 185 N O N 186 N O N 187 N N N 188 S C N 189 N C N 190 N O N 191 N C N 192 N C N 193 N C N 194 N C N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N C N 217 N N N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N S N 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C Y 259 N C Y 260 N C Y 261 N C Y 262 N C Y 263 N C Y 264 N C N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N C N 283 N C N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C N 299 N O N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 R C N 313 N O N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N N Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C N 363 N O N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing Y 250 N doub Y 251 N sing Y 252 N sing N 253 N sing Y 254 N doub N 255 N sing Y 256 N doub N 257 N sing Y 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N doub Y 324 N sing Y 325 N sing N 326 N sing Y 327 N sing Y 328 N doub N 329 N sing Y 330 N doub N 331 N sing Y 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing Y 347 N doub Y 348 N sing Y 349 N sing N 350 N sing Y 351 N doub N 352 N sing Y 353 N doub N 354 N sing Y 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 285 283 296 10.1006/jmbi.1998.2267 9878406 Evolutionary constraints for dimer formation in prokaryotic Cu,Zn superoxide dismutase. 1999 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 93 12774 Novel Dimeric Interface and Electrostatic Recognition in Bacterial Cu,Zn Superoxide Dismutase 1996 10.2210/pdb1bzo/pdb pdb_00001bzo 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 1997-06-02 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.0 X31 EMBL/DESY, HAMBURG SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 15813.854 PROTEIN (SUPEROXIDE DISMUTASE) 1.15.1.1 1 man polymer 65.409 ZINC ION 1 syn non-polymer 63.546 COPPER (II) ION 1 syn non-polymer 270.028 URANYL (VI) ION 2 syn non-polymer 18.015 water 102 nat water no no QDLTVKMTDLQTGKPVGTIELSQNKYGVVFIPELADLTPGMHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHG FPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKGHAIMIHAGGDNHSDMPKALGGGGARVACGVIQ QDLTVKMTDLQTGKPVGTIELSQNKYGVVFIPELADLTPGMHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHG FPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKGHAIMIHAGGDNHSDMPKALGGGGARVACGVIQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Photobacterium Escherichia sample PERIPLASMIC SPACE 658 Photobacterium leiognathi 562 Escherichia coli 1 3.4 45.88 4 PEG 8,000 25%, NACL 100 MM, SODIUM ACETATE 50 MM, PH 4, T=28C chem_comp_atom chem_comp_bond database_2 diffrn_source struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1999-04-09 1 1 2007-10-16 1 2 2011-07-13 1 3 2023-12-27 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBE Y RCSB 1998-11-02 REL REL ZN ZINC ION CU COPPER (II) ION IUM URANYL (VI) ION HOH water ACTIVE SITE CATALYTIC ION COORDINATED TO HIS44, HIS46, HIS61 AND HIS118 ACTIVE SITE METAL ION COORDINATED TO HIS61, HIS69, HIS78 AND ASP81 URANYL ATOMS USED TO SOLVE A PREVIOUS STRUCTURE IN C2 SPACE GROUP (DATA NOT SUBMITTED) THE PROTEIN USED IS A TRUNCATED FORM, WITHOUT THE FIRST 22 RESIDUES PREVIOUS MODEL OF THE PROTEIN IN SPACE GROUP C2 NOT DEPOSITED IN PDB Other experimental model ZN 151 2 ZN ZN 151 A CU 152 3 CU CU 152 A IUM 502 4 IUM IUM 502 A IUM 559 4 IUM IUM 559 A HOH 501 5 HOH HOH 501 A HOH 503 5 HOH HOH 503 A HOH 504 5 HOH HOH 504 A HOH 505 5 HOH HOH 505 A HOH 506 5 HOH HOH 506 A HOH 507 5 HOH HOH 507 A HOH 508 5 HOH HOH 508 A HOH 509 5 HOH HOH 509 A HOH 510 5 HOH HOH 510 A HOH 511 5 HOH HOH 511 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 514 5 HOH HOH 514 A HOH 515 5 HOH HOH 515 A HOH 516 5 HOH HOH 516 A HOH 517 5 HOH HOH 517 A HOH 518 5 HOH HOH 518 A HOH 519 5 HOH HOH 519 A HOH 520 5 HOH HOH 520 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 523 5 HOH HOH 523 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 526 5 HOH HOH 526 A HOH 527 5 HOH HOH 527 A HOH 528 5 HOH HOH 528 A HOH 529 5 HOH HOH 529 A HOH 530 5 HOH HOH 530 A HOH 531 5 HOH HOH 531 A HOH 532 5 HOH HOH 532 A HOH 533 5 HOH HOH 533 A HOH 534 5 HOH HOH 534 A HOH 535 5 HOH HOH 535 A HOH 536 5 HOH HOH 536 A HOH 537 5 HOH HOH 537 A HOH 538 5 HOH HOH 538 A HOH 539 5 HOH HOH 539 A HOH 540 5 HOH HOH 540 A HOH 541 5 HOH HOH 541 A HOH 542 5 HOH HOH 542 A HOH 543 5 HOH HOH 543 A HOH 544 5 HOH HOH 544 A HOH 545 5 HOH HOH 545 A HOH 546 5 HOH HOH 546 A HOH 547 5 HOH HOH 547 A HOH 548 5 HOH HOH 548 A HOH 549 5 HOH HOH 549 A HOH 550 5 HOH HOH 550 A HOH 551 5 HOH HOH 551 A HOH 552 5 HOH HOH 552 A HOH 553 5 HOH HOH 553 A HOH 554 5 HOH HOH 554 A HOH 555 5 HOH HOH 555 A HOH 556 5 HOH HOH 556 A HOH 557 5 HOH HOH 557 A HOH 558 5 HOH HOH 558 A HOH 560 5 HOH HOH 560 A HOH 561 5 HOH HOH 561 A HOH 562 5 HOH HOH 562 A HOH 563 5 HOH HOH 563 A HOH 564 5 HOH HOH 564 A HOH 565 5 HOH HOH 565 A HOH 566 5 HOH HOH 566 A HOH 567 5 HOH HOH 567 A HOH 568 5 HOH HOH 568 A HOH 569 5 HOH HOH 569 A HOH 570 5 HOH HOH 570 A HOH 571 5 HOH HOH 571 A HOH 572 5 HOH HOH 572 A HOH 573 5 HOH HOH 573 A HOH 574 5 HOH HOH 574 A HOH 575 5 HOH HOH 575 A HOH 576 5 HOH HOH 576 A HOH 577 5 HOH HOH 577 A HOH 578 5 HOH HOH 578 A HOH 579 5 HOH HOH 579 A HOH 580 5 HOH HOH 580 A HOH 581 5 HOH HOH 581 A HOH 582 5 HOH HOH 582 A HOH 583 5 HOH HOH 583 A HOH 584 5 HOH HOH 584 A HOH 585 5 HOH HOH 585 A HOH 586 5 HOH HOH 586 A HOH 587 5 HOH HOH 587 A HOH 588 5 HOH HOH 588 A HOH 589 5 HOH HOH 589 A HOH 590 5 HOH HOH 590 A HOH 591 5 HOH HOH 591 A HOH 592 5 HOH HOH 592 A HOH 593 5 HOH HOH 593 A HOH 594 5 HOH HOH 594 A HOH 595 5 HOH HOH 595 A HOH 596 5 HOH HOH 596 A HOH 597 5 HOH HOH 597 A HOH 598 5 HOH HOH 598 A HOH 599 5 HOH HOH 599 A HOH 600 5 HOH HOH 600 A HOH 601 5 HOH HOH 601 A HOH 602 5 HOH HOH 602 A HOH 603 5 HOH HOH 603 A HOH 604 5 HOH HOH 604 A GLN 2 n 1 GLN 2 A ASP 3 n 2 ASP 3 A LEU 4 n 3 LEU 4 A THR 5 n 4 THR 5 A VAL 6 n 5 VAL 6 A LYS 7 n 6 LYS 7 A MET 8 n 7 MET 8 A THR 9 n 8 THR 9 A ASP 9 n 9 A ASP 9 A LEU 9 n 10 B LEU 9 A GLN 10 n 11 GLN 10 A THR 11 n 12 THR 11 A GLY 12 n 13 GLY 12 A LYS 13 n 14 LYS 13 A PRO 14 n 15 PRO 14 A VAL 15 n 16 VAL 15 A GLY 16 n 17 GLY 16 A THR 17 n 18 THR 17 A ILE 18 n 19 ILE 18 A GLU 19 n 20 GLU 19 A LEU 20 n 21 LEU 20 A SER 21 n 22 SER 21 A GLN 22 n 23 GLN 22 A ASN 23 n 24 ASN 23 A LYS 24 n 25 LYS 24 A TYR 25 n 26 TYR 25 A GLY 26 n 27 GLY 26 A VAL 27 n 28 VAL 27 A VAL 28 n 29 VAL 28 A PHE 29 n 30 PHE 29 A ILE 30 n 31 ILE 30 A PRO 31 n 32 PRO 31 A GLU 32 n 33 GLU 32 A LEU 33 n 34 LEU 33 A ALA 34 n 35 ALA 34 A ASP 35 n 36 ASP 35 A LEU 36 n 37 LEU 36 A THR 37 n 38 THR 37 A PRO 38 n 39 PRO 38 A GLY 39 n 40 GLY 39 A MET 40 n 41 MET 40 A HIS 41 n 42 HIS 41 A GLY 42 n 43 GLY 42 A PHE 43 n 44 PHE 43 A HIS 44 n 45 HIS 44 A ILE 45 n 46 ILE 45 A HIS 46 n 47 HIS 46 A GLN 47 n 48 GLN 47 A ASN 48 n 49 ASN 48 A GLY 49 n 50 GLY 49 A SER 50 n 51 SER 50 A CYS 51 n 52 CYS 51 A ALA 52 n 53 ALA 52 A SER 53 n 54 SER 53 A SER 53 n 55 A SER 53 A GLU 53 n 56 B GLU 53 A LYS 53 n 57 C LYS 53 A ASP 53 n 58 D ASP 53 A GLY 53 n 59 E GLY 53 A LYS 53 n 60 F LYS 53 A VAL 53 n 61 G VAL 53 A VAL 53 n 62 H VAL 53 A LEU 54 n 63 LEU 54 A GLY 55 n 64 GLY 55 A GLY 56 n 65 GLY 56 A ALA 57 n 66 ALA 57 A ALA 58 n 67 ALA 58 A GLY 59 n 68 GLY 59 A GLY 60 n 69 GLY 60 A HIS 61 n 70 HIS 61 A TYR 62 n 71 TYR 62 A ASP 63 n 72 ASP 63 A PRO 64 n 73 PRO 64 A GLU 65 n 74 GLU 65 A HIS 66 n 75 HIS 66 A THR 67 n 76 THR 67 A ASN 68 n 77 ASN 68 A LYS 68 n 78 A LYS 68 A HIS 69 n 79 HIS 69 A GLY 70 n 80 GLY 70 A PHE 71 n 81 PHE 71 A PRO 72 n 82 PRO 72 A TRP 73 n 83 TRP 73 A THR 74 n 84 THR 74 A ASP 75 n 85 ASP 75 A ASP 76 n 86 ASP 76 A ASN 77 n 87 ASN 77 A HIS 78 n 88 HIS 78 A LYS 79 n 89 LYS 79 A GLY 80 n 90 GLY 80 A ASP 81 n 91 ASP 81 A LEU 82 n 92 LEU 82 A PRO 83 n 93 PRO 83 A ALA 84 n 94 ALA 84 A LEU 85 n 95 LEU 85 A PHE 86 n 96 PHE 86 A VAL 87 n 97 VAL 87 A SER 88 n 98 SER 88 A ALA 89 n 99 ALA 89 A ASN 90 n 100 ASN 90 A GLY 91 n 101 GLY 91 A LEU 92 n 102 LEU 92 A ALA 93 n 103 ALA 93 A THR 94 n 104 THR 94 A ASN 95 n 105 ASN 95 A PRO 96 n 106 PRO 96 A VAL 97 n 107 VAL 97 A LEU 98 n 108 LEU 98 A ALA 99 n 109 ALA 99 A PRO 100 n 110 PRO 100 A ARG 101 n 111 ARG 101 A LEU 102 n 112 LEU 102 A THR 103 n 113 THR 103 A LEU 107 n 114 LEU 107 A LYS 108 n 115 LYS 108 A GLU 109 n 116 GLU 109 A LEU 110 n 117 LEU 110 A LYS 111 n 118 LYS 111 A GLY 112 n 119 GLY 112 A HIS 113 n 120 HIS 113 A ALA 114 n 121 ALA 114 A ILE 115 n 122 ILE 115 A MET 116 n 123 MET 116 A ILE 117 n 124 ILE 117 A HIS 118 n 125 HIS 118 A ALA 119 n 126 ALA 119 A GLY 120 n 127 GLY 120 A GLY 121 n 128 GLY 121 A ASP 122 n 129 ASP 122 A ASN 123 n 130 ASN 123 A HIS 124 n 131 HIS 124 A SER 125 n 132 SER 125 A ASP 130 n 133 ASP 130 A MET 131 n 134 MET 131 A PRO 132 n 135 PRO 132 A LYS 133 n 136 LYS 133 A ALA 134 n 137 ALA 134 A LEU 135 n 138 LEU 135 A GLY 136 n 139 GLY 136 A GLY 137 n 140 GLY 137 A GLY 138 n 141 GLY 138 A GLY 139 n 142 GLY 139 A ALA 140 n 143 ALA 140 A ARG 141 n 144 ARG 141 A VAL 142 n 145 VAL 142 A ALA 143 n 146 ALA 143 A CYS 144 n 147 CYS 144 A GLY 145 n 148 GLY 145 A VAL 146 n 149 VAL 146 A ILE 147 n 150 ILE 147 A GLN 148 n 151 GLN 148 A 0.19 0.26 394 5 author_defined_assembly 2 dimeric A HIS 44 A ND1 HIS 45 1_555 A CU 152 C CU CU 1_555 A HIS 46 A NE2 HIS 47 1_555 142.0 A HIS 44 A ND1 HIS 45 1_555 A CU 152 C CU CU 1_555 A HIS 118 A NE2 HIS 125 1_555 101.9 A HIS 46 A NE2 HIS 47 1_555 A CU 152 C CU CU 1_555 A HIS 118 A NE2 HIS 125 1_555 116.1 A HIS 61 A ND1 HIS 70 1_555 A ZN 151 B ZN ZN 1_555 A HIS 69 A ND1 HIS 79 1_555 109.2 A HIS 61 A ND1 HIS 70 1_555 A ZN 151 B ZN ZN 1_555 A HIS 78 A ND1 HIS 88 1_555 100.7 A HIS 69 A ND1 HIS 79 1_555 A ZN 151 B ZN ZN 1_555 A HIS 78 A ND1 HIS 88 1_555 123.6 A HIS 61 A ND1 HIS 70 1_555 A ZN 151 B ZN ZN 1_555 A ASP 81 A OD1 ASP 91 1_555 110.5 A HIS 69 A ND1 HIS 79 1_555 A ZN 151 B ZN ZN 1_555 A ASP 81 A OD1 ASP 91 1_555 97.3 A HIS 78 A ND1 HIS 88 1_555 A ZN 151 B ZN ZN 1_555 A ASP 81 A OD1 ASP 91 1_555 115.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 97 A O VAL 107 A N PHE 29 A N PHE 30 A O GLY 26 A O GLY 27 A N ASN 23 A N ASN 24 A O VAL 15 A O VAL 16 A N MET 8 A N MET 7 A O GLY 39 A O GLY 40 A N VAL 87 A N VAL 97 A O HIS 44 A O HIS 45 A N MET 116 A N MET 123 A O ILE 115 A O ILE 122 A N GLY 145 A N GLY 148 A A O SER 53 A O SER 55 H A N VAL 53 A N VAL 62 1 A O GLN 2 A O GLN 1 0 Y 1 A CG GLN 2 A CG GLN 1 0 Y 1 A CD GLN 2 A CD GLN 1 0 Y 1 A OE1 GLN 2 A OE1 GLN 1 0 Y 1 A NE2 GLN 2 A NE2 GLN 1 0 Y 1 A CA ASP 3 A CA ASP 2 0 Y 1 A CD1 LEU 4 A CD1 LEU 3 0 Y 1 A CD2 LEU 4 A CD2 LEU 3 0 Y 1 A OG1 THR 5 A OG1 THR 4 0 Y 1 A CG LYS 7 A CG LYS 6 0 Y 1 A CD LYS 7 A CD LYS 6 0 Y 1 A NZ LYS 7 A NZ LYS 6 0 Y 1 A CG2 THR 9 A CG2 THR 8 0 Y 1 A CG GLN 10 A CG GLN 11 0 Y 1 A CG LYS 13 A CG LYS 14 0 Y 1 A CD LYS 13 A CD LYS 14 0 Y 1 A CE LYS 13 A CE LYS 14 0 Y 1 A NZ LYS 13 A NZ LYS 14 0 Y 1 A CD GLU 19 A CD GLU 20 0 Y 1 A CG GLU 32 A CG GLU 33 0 Y 1 A CD GLN 47 A CD GLN 48 0 Y 1 A OE1 GLN 47 A OE1 GLN 48 0 Y C 1 A CB LYS 53 A CB LYS 57 0 Y C 1 A CG LYS 53 A CG LYS 57 0 Y C 1 A CD LYS 53 A CD LYS 57 0 Y C 1 A CE LYS 53 A CE LYS 57 0 Y C 1 A NZ LYS 53 A NZ LYS 57 0 Y F 1 A CG LYS 53 A CG LYS 60 0 Y 1 A NE2 HIS 66 A NE2 HIS 75 0 Y 1 A CG ASN 68 A CG ASN 77 0 Y 1 A OD1 ASN 68 A OD1 ASN 77 0 Y 1 A ND2 ASN 68 A ND2 ASN 77 0 Y 1 A CE LYS 79 A CE LYS 89 0 Y 1 A NZ LYS 79 A NZ LYS 89 0 Y 1 A OD1 ASN 90 A OD1 ASN 100 0 Y 1 A CD LYS 108 A CD LYS 115 0 Y 1 A CE LYS 108 A CE LYS 115 0 Y 1 A NZ LYS 108 A NZ LYS 115 0 Y 1 A CG LYS 111 A CG LYS 118 0 Y 1 A CD LYS 111 A CD LYS 118 0 Y 1 A CE LYS 111 A CE LYS 118 0 Y 1 A NZ LYS 111 A NZ LYS 118 0 Y 1 A CE LYS 133 A CE LYS 136 0 Y 1 A CD1 ILE 147 A CD1 ILE 150 0 Y 1 A CG GLN 148 A CG GLN 151 0 Y 1 A CD GLN 148 A CD GLN 151 0 Y 1 A OE1 GLN 148 A OE1 GLN 151 0 Y 1 A NE2 GLN 148 A NE2 GLN 151 0 Y 1 A O1 IUM 502 D O1 IUM 1 1 N 1 A O2 IUM 502 D O2 IUM 1 1 N 1 A O1 IUM 559 E O1 IUM 1 1 N 1 A O2 IUM 559 E O2 IUM 1 1 N 1 6.05 0.90 118.30 124.35 A A A CB CG OD1 ASP ASP ASP 3 3 3 N 1 -6.79 0.90 118.30 111.51 A A A CB CG OD2 ASP ASP ASP 3 3 3 N D D D 1 -5.88 0.90 118.30 112.42 A A A CB CG OD2 ASP ASP ASP 53 53 53 N 1 -8.91 1.40 112.40 103.49 A A A CA CB CG2 THR THR THR 67 67 67 N 1 6.34 0.90 118.30 124.64 A A A CB CG OD1 ASP ASP ASP 75 75 75 N 1 -6.27 0.90 118.30 112.03 A A A CB CG OD2 ASP ASP ASP 75 75 75 N 1 7.10 0.50 120.30 127.40 A A A NE CZ NH1 ARG ARG ARG 101 101 101 N 1 -4.42 0.50 120.30 115.88 A A A NE CZ NH2 ARG ARG ARG 101 101 101 N 1 5.10 0.50 120.30 125.40 A A A NE CZ NH1 ARG ARG ARG 141 141 141 N 1 -4.27 0.50 120.30 116.03 A A A NE CZ NH2 ARG ARG ARG 141 141 141 N B B 1 A A CD OE2 GLU GLU 53 53 0.069 0.011 1.252 1.321 N 1 A A CD OE2 GLU GLU 65 65 0.066 0.011 1.252 1.318 N 1 A A O O HOH HOH 596 596 0.67 1_555 4_555 1 A A O O HOH HOH 508 508 1.83 1_555 12_555 1 A A O O HOH HOH 542 542 2.08 1_555 18_655 1 A ASP 76 -86.35 45.11 2.1 24.7 8469 8075 96 1 TNT BCORREL 0.0 MOLECULAR REPLACEMENT PREVIOUS MODEL OF THE PROTEIN IN SPACE GROUP C2 NOT DEPOSITED IN PDB TNT PROTGEO 206 0.77 2.1 24.7 102 1215 4 0 1109 0.018 1137 5.5 2.62 1533 9.5 0 0.017 27 5.5 0.018 169 25.5 4.25 1137 15.0 0.067 20 21.0 2.1 24.7 1BZO 8469 0.06 0.09 1 3 96 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement TNT 5E THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY. 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N A GLY 56 A GLY 65 HELX_P A ALA 58 A ALA 67 5 1 3 A LYS 108 A LYS 115 HELX_P A LEU 110 A LEU 117 5 2 3 A ALA 134 A ALA 137 HELX_P A GLY 137 A GLY 140 5 3 4 disulf 2.028 A CYS 51 A SG CYS 52 1_555 A CYS 144 A SG CYS 147 1_555 metalc 2.134 A HIS 44 A ND1 HIS 45 1_555 A CU 152 C CU CU 1_555 metalc 2.045 A HIS 46 A NE2 HIS 47 1_555 A CU 152 C CU CU 1_555 metalc 1.952 A HIS 61 A ND1 HIS 70 1_555 A ZN 151 B ZN ZN 1_555 metalc 1.921 A HIS 69 A ND1 HIS 79 1_555 A ZN 151 B ZN ZN 1_555 metalc 2.001 A HIS 78 A ND1 HIS 88 1_555 A ZN 151 B ZN ZN 1_555 metalc 2.088 A ASP 81 A OD1 ASP 91 1_555 A ZN 151 B ZN ZN 1_555 metalc 2.222 A HIS 118 A NE2 HIS 125 1_555 A CU 152 C CU CU 1_555 OXIDOREDUCTASE MONOMERIC CU, ZN SUPEROXIDE DISMUTASE, PROTEIN-SUBUNIT RECOGNITION, PROTEIN ELECTROSTATIC, OXIDOREDUCTASE A MET 131 A MET 134 1 A PRO 132 A PRO 135 1.80 SODC_PHOLE UNP 1 P00446 23 173 1BZO 2 148 P00446 A 1 1 151 1 THR SEE REMARK 999 ILE 30 1BZO A P00446 UNP 53 31 4 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 97 A VAL 107 A ALA 99 A ALA 109 A GLY 26 A GLY 27 A LEU 33 A LEU 34 A PRO 14 A PRO 15 A ASN 23 A ASN 24 A ASP 3 A ASP 2 A THR 9 A THR 8 A GLY 39 A GLY 40 A HIS 41 A HIS 42 A LEU 85 A LEU 95 A VAL 87 A VAL 97 A PHE 43 A PHE 44 A HIS 46 A HIS 47 A ALA 114 A ALA 121 A HIS 118 A HIS 125 A ARG 141 A ARG 144 A VAL 146 A VAL 149 A SER 53 A SER 55 A LYS 53 A LYS 57 A C A LYS 53 A LYS 60 A VAL 53 A VAL 62 F H ACTIVE SITE CU,ZN COORDINATION SPHERE. HIS44, HIS46, HIS61 AND HIS118 ARE COORDINATE TO THE COPPER CATALYTIC ION, WHILE HIS61, HIS69, HIS78 AND ASP81 ARE COORDINATED TO THE ZINC ION Author 4 ACTIVE SITE CU,ZN COORDINATION SPHERE. HIS44, HIS46, HIS61 AND HIS118 ARE COORDINATE TO THE COPPER CATALYTIC ION, WHILE HIS61, HIS69, HIS78 AND ASP81 ARE COORDINATED TO THE ZINC ION Author 4 BINDING SITE FOR RESIDUE ZN A 151 A ZN 151 Software 4 BINDING SITE FOR RESIDUE CU A 152 A CU 152 Software 4 BINDING SITE FOR RESIDUE IUM A 502 A IUM 502 Software 1 BINDING SITE FOR RESIDUE IUM A 559 A IUM 559 Software 1 A HIS 44 A HIS 45 4 1_555 A HIS 46 A HIS 47 4 1_555 A HIS 61 A HIS 70 4 1_555 A HIS 118 A HIS 125 4 1_555 A HIS 61 A HIS 70 4 1_555 A HIS 69 A HIS 79 4 1_555 A HIS 78 A HIS 88 4 1_555 A ASP 81 A ASP 91 4 1_555 A HIS 61 A HIS 70 4 1_555 A HIS 69 A HIS 79 4 1_555 A HIS 78 A HIS 88 4 1_555 A ASP 81 A ASP 91 4 1_555 A HIS 44 A HIS 45 4 1_555 A HIS 46 A HIS 47 4 1_555 A HIS 61 A HIS 70 4 1_555 A HIS 118 A HIS 125 4 1_555 A ASP 76 A ASP 86 1 1_555 A GLU 53 A GLU 56 B 1 1_555 155 H 3 2