1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Durant, P.C. Davis, D.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 n PSEUDOURIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 285 115 131 10.1006/jmbi.1998.2297 9878393 Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. 1999 10.2210/pdb1bzu/pdb pdb_00001bzu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5350.189 TRNA ANTICODON (RESIDUES 27-43) 1 syn polymer no yes UCAGACUUUUAA(PSU)CUGA UCAGACUUUUAAUCUGA A polyribonucleotide n n n n n n n n n n n n n n n n n -2.329 1 20 A 27 A 43 12.112 A_U27:A43_A 1 -6.820 0.955 -1.257 -0.752 3.744 1 19 A 28 A 42 -2.804 A_C28:G42_A 2 -9.185 0.859 1.074 -0.673 -7.222 1 20 A 29 A 41 -4.024 A_A29:U41_A 3 -0.188 -0.417 -1.329 -0.547 -2.116 1 19 A 30 A 40 -5.385 A_G30:C40_A 4 -21.429 -0.024 0.380 -0.234 -3.430 1 21 A 31 A 39 -7.716 A_A31:PSU39_A 5 -9.723 0.508 -0.030 -0.083 9.691 A 32 A 38 -11.959 A_C32:A38_A 6 0.419 6.621 -0.437 -2.724 3.137 27.588 A A 27 28 13.861 A A 43 42 3.649 6.428 -0.438 -1.542 AA_U27C28:G42A43_AA 1 -9.097 19.615 25.280 -4.934 -1.489 3.166 26.669 A A 28 29 15.957 A A 42 41 4.308 7.062 -0.155 -2.143 AA_C28A29:U41G42_AA 2 10.780 -24.357 23.398 -6.898 3.773 3.516 31.101 A A 29 30 -3.407 A A 41 40 3.499 -1.814 0.030 -1.644 AA_A29G30:C40U41_AA 3 -6.132 11.516 30.452 -2.690 -1.328 2.737 33.461 A A 30 31 8.745 A A 40 39 3.120 5.017 -0.218 -2.409 AA_G30A31:PSU39C40_AA 4 -0.354 0.617 33.092 -4.930 0.326 2.594 54.306 A A 31 32 7.577 A A 39 38 2.904 6.886 -0.657 -1.691 AA_A31C32:A38PSU39_AA 5 6.537 -7.194 53.532 -2.209 1.057 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1999-04-27 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id Y BNL 1998-11-05 REL REL LOWEST RMSD DIFFERENCE FROM AVERAGE STRUCTURE. STRUCTURE WAS DETERMINED USING RESTRAINTS FROM HOMONUCLEAR ROESY, DQCOSY AND NOESY DATA. ASSIGNMENTS WERE MADE WITH A COMBINATION OF ROESY, NOESY, TOCSY, 1H-13C HMQC AND 1H-31P. LEAST RESTRAINT VIOLATION 32 1 NOESY ROESY TOCSY HMQC 1H-31P COSY 1H-31P HETERO-TOCSY-TOCSY DQCOSY 100 mM NACL 7 303 K AMBER FORCEFIELD molecular dynamics H2O/D2O MSI refinement Discover 95.0 structure solution VNMR structure solution Felix structure solution Discover 500 Varian UNITY 500 U 27 n 1 U 27 A C 28 n 2 C 28 A A 29 n 3 A 29 A G 30 n 4 G 30 A A 31 n 5 A 31 A C 32 n 6 C 32 A U 33 n 7 U 33 A U 34 n 8 U 34 A U 35 n 9 U 35 A U 36 n 10 U 36 A A 37 n 11 A 37 A A 38 n 12 A 38 A PSU 39 n 13 PSU 39 A C 40 n 14 C 40 A U 41 n 15 U 41 A G 42 n 16 G 42 A A 43 n 17 A 43 A author_defined_assembly 1 monomeric A PSU 39 PSEUDOURIDINE-5'-MONOPHOSPHATE A PSU 13 U 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A 37 0.055 SIDE CHAIN 1 5.15 0.70 108.50 113.65 A A A O4' C1' N1 C C C 28 28 28 N 1 5.58 0.70 108.50 114.08 A A A O4' C1' N9 A A A 31 31 31 N 1 6.17 0.80 101.50 107.67 A A A C3' C2' C1' A A A 37 37 37 N 1 4.49 0.70 108.50 112.99 A A A O4' C1' N9 A A A 37 37 37 N 1 4.36 0.70 108.50 112.86 A A A O4' C1' N1 C C C 40 40 40 N 1 4.46 0.70 108.50 112.96 A A A O4' C1' N1 U U U 41 41 41 N model building VNMR refinement AMBER phasing VNMR STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS, 3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE 1 N N covale 1.621 both A A 38 A O3' A 12 1_555 A PSU 39 A P PSU 13 1_555 covale 1.615 both A PSU 39 A O3' PSU 13 1_555 A C 40 A P C 14 1_555 hydrog WATSON-CRICK A U 27 A N3 U 1 1_555 A A 43 A N1 A 17 1_555 hydrog WATSON-CRICK A U 27 A O4 U 1 1_555 A A 43 A N6 A 17 1_555 hydrog WATSON-CRICK A C 28 A N3 C 2 1_555 A G 42 A N1 G 16 1_555 hydrog WATSON-CRICK A C 28 A N4 C 2 1_555 A G 42 A O6 G 16 1_555 hydrog WATSON-CRICK A C 28 A O2 C 2 1_555 A G 42 A N2 G 16 1_555 hydrog WATSON-CRICK A A 29 A N1 A 3 1_555 A U 41 A N3 U 15 1_555 hydrog WATSON-CRICK A A 29 A N6 A 3 1_555 A U 41 A O4 U 15 1_555 hydrog WATSON-CRICK A G 30 A N1 G 4 1_555 A C 40 A N3 C 14 1_555 hydrog WATSON-CRICK A G 30 A N2 G 4 1_555 A C 40 A O2 C 14 1_555 hydrog WATSON-CRICK A G 30 A O6 G 4 1_555 A C 40 A N4 C 14 1_555 hydrog REVERSED WATSON-CRICK A A 31 A N1 A 5 1_555 A PSU 39 A N3 PSU 13 1_555 hydrog REVERSED WATSON-CRICK A A 31 A N6 A 5 1_555 A PSU 39 A O2 PSU 13 1_555 hydrog C-A MISPAIR A C 32 A O2 C 6 1_555 A A 38 A N6 A 12 1_555 RNA TRNA, PSEUDOURIDINE, ANTICODON, RNA 1BZU PDB 1 1BZU 27 43 1BZU 27 43 1BZU A 1 1 17 1 P 1