1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Durant, P.C.
Davis, D.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
285
115
131
10.1006/jmbi.1998.2297
9878393
Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
1999
10.2210/pdb1bzu/pdb
pdb_00001bzu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5350.189
TRNA
ANTICODON (RESIDUES 27-43)
1
syn
polymer
no
yes
UCAGACUUUUAA(PSU)CUGA
UCAGACUUUUAAUCUGA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-2.329
1
20
A
27
A
43
12.112
A_U27:A43_A
1
-6.820
0.955
-1.257
-0.752
3.744
1
19
A
28
A
42
-2.804
A_C28:G42_A
2
-9.185
0.859
1.074
-0.673
-7.222
1
20
A
29
A
41
-4.024
A_A29:U41_A
3
-0.188
-0.417
-1.329
-0.547
-2.116
1
19
A
30
A
40
-5.385
A_G30:C40_A
4
-21.429
-0.024
0.380
-0.234
-3.430
1
21
A
31
A
39
-7.716
A_A31:PSU39_A
5
-9.723
0.508
-0.030
-0.083
9.691
A
32
A
38
-11.959
A_C32:A38_A
6
0.419
6.621
-0.437
-2.724
3.137
27.588
A
A
27
28
13.861
A
A
43
42
3.649
6.428
-0.438
-1.542
AA_U27C28:G42A43_AA
1
-9.097
19.615
25.280
-4.934
-1.489
3.166
26.669
A
A
28
29
15.957
A
A
42
41
4.308
7.062
-0.155
-2.143
AA_C28A29:U41G42_AA
2
10.780
-24.357
23.398
-6.898
3.773
3.516
31.101
A
A
29
30
-3.407
A
A
41
40
3.499
-1.814
0.030
-1.644
AA_A29G30:C40U41_AA
3
-6.132
11.516
30.452
-2.690
-1.328
2.737
33.461
A
A
30
31
8.745
A
A
40
39
3.120
5.017
-0.218
-2.409
AA_G30A31:PSU39C40_AA
4
-0.354
0.617
33.092
-4.930
0.326
2.594
54.306
A
A
31
32
7.577
A
A
39
38
2.904
6.886
-0.657
-1.691
AA_A31C32:A38PSU39_AA
5
6.537
-7.194
53.532
-2.209
1.057
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1999-04-27
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
Y
BNL
1998-11-05
REL
REL
LOWEST RMSD DIFFERENCE FROM AVERAGE STRUCTURE. STRUCTURE WAS DETERMINED USING RESTRAINTS FROM HOMONUCLEAR ROESY, DQCOSY AND NOESY DATA. ASSIGNMENTS WERE MADE WITH A COMBINATION OF ROESY, NOESY, TOCSY, 1H-13C HMQC AND 1H-31P.
LEAST RESTRAINT VIOLATION
32
1
NOESY
ROESY
TOCSY
HMQC
1H-31P COSY
1H-31P HETERO-TOCSY-TOCSY
DQCOSY
100 mM NACL
7
303
K
AMBER FORCEFIELD
molecular dynamics
H2O/D2O
MSI
refinement
Discover
95.0
structure solution
VNMR
structure solution
Felix
structure solution
Discover
500
Varian
UNITY 500
U
27
n
1
U
27
A
C
28
n
2
C
28
A
A
29
n
3
A
29
A
G
30
n
4
G
30
A
A
31
n
5
A
31
A
C
32
n
6
C
32
A
U
33
n
7
U
33
A
U
34
n
8
U
34
A
U
35
n
9
U
35
A
U
36
n
10
U
36
A
A
37
n
11
A
37
A
A
38
n
12
A
38
A
PSU
39
n
13
PSU
39
A
C
40
n
14
C
40
A
U
41
n
15
U
41
A
G
42
n
16
G
42
A
A
43
n
17
A
43
A
author_defined_assembly
1
monomeric
A
PSU
39
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
13
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
37
0.055
SIDE CHAIN
1
5.15
0.70
108.50
113.65
A
A
A
O4'
C1'
N1
C
C
C
28
28
28
N
1
5.58
0.70
108.50
114.08
A
A
A
O4'
C1'
N9
A
A
A
31
31
31
N
1
6.17
0.80
101.50
107.67
A
A
A
C3'
C2'
C1'
A
A
A
37
37
37
N
1
4.49
0.70
108.50
112.99
A
A
A
O4'
C1'
N9
A
A
A
37
37
37
N
1
4.36
0.70
108.50
112.86
A
A
A
O4'
C1'
N1
C
C
C
40
40
40
N
1
4.46
0.70
108.50
112.96
A
A
A
O4'
C1'
N1
U
U
U
41
41
41
N
model building
VNMR
refinement
AMBER
phasing
VNMR
STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS, 3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE
1
N
N
covale
1.621
both
A
A
38
A
O3'
A
12
1_555
A
PSU
39
A
P
PSU
13
1_555
covale
1.615
both
A
PSU
39
A
O3'
PSU
13
1_555
A
C
40
A
P
C
14
1_555
hydrog
WATSON-CRICK
A
U
27
A
N3
U
1
1_555
A
A
43
A
N1
A
17
1_555
hydrog
WATSON-CRICK
A
U
27
A
O4
U
1
1_555
A
A
43
A
N6
A
17
1_555
hydrog
WATSON-CRICK
A
C
28
A
N3
C
2
1_555
A
G
42
A
N1
G
16
1_555
hydrog
WATSON-CRICK
A
C
28
A
N4
C
2
1_555
A
G
42
A
O6
G
16
1_555
hydrog
WATSON-CRICK
A
C
28
A
O2
C
2
1_555
A
G
42
A
N2
G
16
1_555
hydrog
WATSON-CRICK
A
A
29
A
N1
A
3
1_555
A
U
41
A
N3
U
15
1_555
hydrog
WATSON-CRICK
A
A
29
A
N6
A
3
1_555
A
U
41
A
O4
U
15
1_555
hydrog
WATSON-CRICK
A
G
30
A
N1
G
4
1_555
A
C
40
A
N3
C
14
1_555
hydrog
WATSON-CRICK
A
G
30
A
N2
G
4
1_555
A
C
40
A
O2
C
14
1_555
hydrog
WATSON-CRICK
A
G
30
A
O6
G
4
1_555
A
C
40
A
N4
C
14
1_555
hydrog
REVERSED WATSON-CRICK
A
A
31
A
N1
A
5
1_555
A
PSU
39
A
N3
PSU
13
1_555
hydrog
REVERSED WATSON-CRICK
A
A
31
A
N6
A
5
1_555
A
PSU
39
A
O2
PSU
13
1_555
hydrog
C-A MISPAIR
A
C
32
A
O2
C
6
1_555
A
A
38
A
N6
A
12
1_555
RNA
TRNA, PSEUDOURIDINE, ANTICODON, RNA
1BZU
PDB
1
1BZU
27
43
1BZU
27
43
1BZU
A
1
1
17
1
P 1