5.25
10.048
8.778
-4.069
A
N
MLU
1
HETATM
A
N
MLU
1
1
1.00
1
N
7.69
10.344
10.132
-4.677
A
CN
MLU
1
HETATM
A
CN
MLU
1
1
1.00
1
C
4.60
8.801
8.765
-3.270
A
CA
MLU
1
HETATM
A
CA
MLU
1
1
1.00
1
C
4.19
7.640
9.195
-4.178
A
C
MLU
1
HETATM
A
C
MLU
1
1
1.00
1
C
6.21
7.452
8.625
-5.238
A
O
MLU
1
HETATM
A
O
MLU
1
1
1.00
1
O
4.87
8.515
7.365
-2.731
A
CB
MLU
1
HETATM
A
CB
MLU
1
1
1.00
1
C
5.07
9.559
6.751
-1.814
A
CG
MLU
1
HETATM
A
CG
MLU
1
1
1.00
1
C
10.03
9.842
7.612
-0.607
A
CD1
MLU
1
HETATM
A
CD1
MLU
1
1
1.00
1
C
7.11
9.076
5.390
-1.410
A
CD2
MLU
1
HETATM
A
CD2
MLU
1
1
1.00
1
C
3.73
6.850
10.185
-3.716
A
N
OMZ
2
HETATM
A
N
OMZ
1
2
1.00
1
N
3.90
5.774
10.700
-4.546
A
CA
OMZ
2
HETATM
A
CA
OMZ
1
2
1.00
1
C
3.78
4.451
9.929
-4.429
A
C
OMZ
2
HETATM
A
C
OMZ
1
2
1.00
1
C
4.23
3.516
10.252
-5.146
A
O
OMZ
2
HETATM
A
O
OMZ
1
2
1.00
1
O
4.15
5.503
12.212
-4.332
A
CB
OMZ
2
HETATM
A
CB
OMZ
1
2
1.00
1
C
4.60
6.691
12.948
-4.459
A
OC
OMZ
2
HETATM
A
OC
OMZ
1
2
1.00
1
O
4.19
4.842
12.486
-3.016
A
CG
OMZ
2
HETATM
A
CG
OMZ
1
2
1.00
1
C
4.63
3.464
12.714
-2.999
A
CD1
OMZ
2
HETATM
A
CD1
OMZ
1
2
1.00
1
C
4.44
5.534
12.489
-1.818
A
CD2
OMZ
2
HETATM
A
CD2
OMZ
1
2
1.00
1
C
4.90
2.805
12.900
-1.800
A
CE1
OMZ
2
HETATM
A
CE1
OMZ
1
2
1.00
1
C
7.76
1.121
13.229
-1.791
A
CL
OMZ
2
HETATM
A
CL
OMZ
1
2
1.00
1
CL
4.88
4.871
12.631
-0.631
A
CE2
OMZ
2
HETATM
A
CE2
OMZ
1
2
1.00
1
C
4.81
3.513
12.810
-0.613
A
CZ
OMZ
2
HETATM
A
CZ
OMZ
1
2
1.00
1
C
5.54
2.835
12.869
0.606
A
OH
OMZ
2
HETATM
A
OH
OMZ
1
2
1.00
1
O
3.69
4.410
8.915
-3.544
A
N
ASN
3
ATOM
A
N
ASN
1
3
1.00
1
N
3.55
3.295
7.974
-3.520
A
CA
ASN
3
ATOM
A
CA
ASN
1
3
1.00
1
C
3.23
2.279
8.263
-2.458
A
C
ASN
3
ATOM
A
C
ASN
1
3
1.00
1
C
3.75
1.140
8.658
-2.785
A
O
ASN
3
ATOM
A
O
ASN
1
3
1.00
1
O
3.76
3.816
6.547
-3.577
A
CB
ASN
3
ATOM
A
CB
ASN
1
3
1.00
1
C
3.71
4.915
6.223
-2.579
A
CG
ASN
3
ATOM
A
CG
ASN
1
3
1.00
1
C
3.94
5.188
6.958
-1.654
A
OD1
ASN
3
ATOM
A
OD1
ASN
1
3
1.00
1
O
4.78
5.528
5.047
-2.836
A
ND2
ASN
3
ATOM
A
ND2
ASN
1
3
1.00
1
N
3.32
2.648
8.088
-1.185
A
N
GHP
4
HETATM
A
N
GHP
1
4
1.00
1
N
3.40
1.686
8.093
-0.100
A
CA
GHP
4
HETATM
A
CA
GHP
1
4
1.00
1
C
3.26
1.847
6.851
0.752
A
C
GHP
4
HETATM
A
C
GHP
1
4
1.00
1
C
3.63
2.956
6.423
1.044
A
O
GHP
4
HETATM
A
O
GHP
1
4
1.00
1
O
3.64
1.707
9.357
0.764
A
C1
GHP
4
HETATM
A
C1
GHP
1
4
1.00
1
C
4.07
1.137
9.379
2.028
A
C2
GHP
4
HETATM
A
C2
GHP
1
4
1.00
1
C
4.26
1.167
10.528
2.787
A
C3
GHP
4
HETATM
A
C3
GHP
1
4
1.00
1
C
4.37
1.700
11.699
2.272
A
C4
GHP
4
HETATM
A
C4
GHP
1
4
1.00
1
C
4.98
1.818
12.843
3.053
A
O4
GHP
4
HETATM
A
O4
GHP
1
4
1.00
1
O
4.64
2.250
11.673
1.024
A
C5
GHP
4
HETATM
A
C5
GHP
1
4
1.00
1
C
3.95
2.259
10.514
0.270
A
C6
GHP
4
HETATM
A
C6
GHP
1
4
1.00
1
C
3.40
0.700
6.272
1.156
A
N
GHP
5
HETATM
A
N
GHP
1
5
1.00
1
N
3.25
0.680
5.347
2.244
A
CA
GHP
5
HETATM
A
CA
GHP
1
5
1.00
1
C
3.79
-0.734
5.462
2.902
A
C
GHP
5
HETATM
A
C
GHP
1
5
1.00
1
C
4.23
-1.670
5.827
2.204
A
O
GHP
5
HETATM
A
O
GHP
1
5
1.00
1
O
3.55
0.875
3.864
1.976
A
C1
GHP
5
HETATM
A
C1
GHP
1
5
1.00
1
C
3.64
1.890
3.182
2.624
A
C2
GHP
5
HETATM
A
C2
GHP
1
5
1.00
1
C
4.14
1.938
1.787
2.653
A
C3
GHP
5
HETATM
A
C3
GHP
1
5
1.00
1
C
4.43
0.972
1.081
1.954
A
C4
GHP
5
HETATM
A
C4
GHP
1
5
1.00
1
C
5.78
0.994
-0.276
2.031
A
O4
GHP
5
HETATM
A
O4
GHP
1
5
1.00
1
O
4.85
0.025
1.759
1.228
A
C5
GHP
5
HETATM
A
C5
GHP
1
5
1.00
1
C
4.27
-0.031
3.123
1.214
A
C6
GHP
5
HETATM
A
C6
GHP
1
5
1.00
1
C
3.80
-0.875
5.042
4.155
A
N
OMY
6
HETATM
A
N
OMY
1
6
1.00
1
N
3.79
0.110
4.613
5.072
A
CA
OMY
6
HETATM
A
CA
OMY
1
6
1.00
1
C
4.82
0.677
10.586
4.090
A
OCZ
OMY
6
HETATM
A
OCZ
OMY
1
6
1.00
1
O
4.18
-0.733
8.949
5.096
A
CE2
OMY
6
HETATM
A
CE2
OMY
1
6
1.00
1
C
4.39
1.626
8.593
5.111
A
CE1
OMY
6
HETATM
A
CE1
OMY
1
6
1.00
1
C
4.21
0.522
9.378
4.758
A
CZ
OMY
6
HETATM
A
CZ
OMY
1
6
1.00
1
C
3.85
0.173
6.891
5.985
A
CG
OMY
6
HETATM
A
CG
OMY
1
6
1.00
1
C
3.86
-0.904
7.716
5.726
A
CD2
OMY
6
HETATM
A
CD2
OMY
1
6
1.00
1
C
4.03
1.468
7.363
5.706
A
CD1
OMY
6
HETATM
A
CD1
OMY
1
6
1.00
1
C
4.16
0.027
5.438
6.394
A
CB
OMY
6
HETATM
A
CB
OMY
1
6
1.00
1
C
5.57
3.245
9.140
4.750
A
CL
OMY
6
HETATM
A
CL
OMY
1
6
1.00
1
CL
5.17
-1.040
2.517
5.168
A
O
OMY
6
HETATM
A
O
OMY
1
6
1.00
1
O
4.19
0.035
3.099
5.268
A
C
OMY
6
HETATM
A
C
OMY
1
6
1.00
1
C
4.76
-1.221
5.230
7.010
A
ODE
OMY
6
HETATM
A
ODE
OMY
1
6
1.00
1
O
4.21
1.175
2.492
5.544
A
N
3FG
7
HETATM
A
N
3FG
1
7
1.00
1
N
4.33
4.644
1.279
1.777
A
OD1
3FG
7
HETATM
A
OD1
3FG
1
7
1.00
1
O
4.18
4.263
0.895
3.034
A
CD1
3FG
7
HETATM
A
CD1
3FG
1
7
1.00
1
C
4.00
2.993
1.109
3.491
A
CG1
3FG
7
HETATM
A
CG1
3FG
1
7
1.00
1
C
4.06
5.233
0.289
3.814
A
CZ
3FG
7
HETATM
A
CZ
3FG
1
7
1.00
1
C
4.28
4.920
-0.100
5.087
A
CD2
3FG
7
HETATM
A
CD2
3FG
1
7
1.00
1
C
5.22
5.821
-0.688
5.933
A
OD2
3FG
7
HETATM
A
OD2
3FG
1
7
1.00
1
O
4.71
3.658
0.107
5.607
A
CG2
3FG
7
HETATM
A
CG2
3FG
1
7
1.00
1
C
4.29
2.690
0.741
4.830
A
CB
3FG
7
HETATM
A
CB
3FG
1
7
1.00
1
C
4.91
1.304
1.051
5.408
A
CA
3FG
7
HETATM
A
CA
3FG
1
7
1.00
1
C
5.83
1.001
0.256
6.684
A
C
3FG
7
HETATM
A
C
3FG
1
7
1.00
1
C
7.33
1.075
0.888
7.788
A
O
3FG
7
HETATM
A
O
3FG
1
7
1.00
1
O
7.85
0.764
-0.950
6.545
A
OXT
3FG
7
HETATM
A
OXT
3FG
1
7
1.00
1
O
5.98
-13.045
5.886
5.804
B
N
MLU
1
HETATM
B
N
MLU
1
1
1.00
1
N
7.17
-13.354
6.388
7.161
B
CN
MLU
1
HETATM
B
CN
MLU
1
1
1.00
1
C
6.25
-11.685
6.224
5.270
B
CA
MLU
1
HETATM
B
CA
MLU
1
1
1.00
1
C
5.60
-10.682
5.688
6.270
B
C
MLU
1
HETATM
B
C
MLU
1
1
1.00
1
C
7.38
-10.865
4.582
6.772
B
O
MLU
1
HETATM
B
O
MLU
1
1
1.00
1
O
8.57
-11.467
5.603
3.935
B
CB
MLU
1
HETATM
B
CB
MLU
1
1
1.00
1
C
8.68
-12.425
5.964
2.828
B
CG
MLU
1
HETATM
B
CG
MLU
1
1
1.00
1
C
12.56
-12.495
7.424
2.563
B
CD1
MLU
1
HETATM
B
CD1
MLU
1
1
1.00
1
C
10.60
-12.118
5.105
1.638
B
CD2
MLU
1
HETATM
B
CD2
MLU
1
1
1.00
1
C
5.63
-9.643
6.496
6.544
B
N
OMZ
2
HETATM
B
N
OMZ
1
2
1.00
1
N
5.87
-8.715
6.086
7.595
B
CA
OMZ
2
HETATM
B
CA
OMZ
1
2
1.00
1
C
5.14
-7.357
5.572
7.096
B
C
OMZ
2
HETATM
B
C
OMZ
1
2
1.00
1
C
5.91
-6.556
5.130
7.912
B
O
OMZ
2
HETATM
B
O
OMZ
1
2
1.00
1
O
6.31
-8.531
7.180
8.682
B
CB
OMZ
2
HETATM
B
CB
OMZ
1
2
1.00
1
C
7.98
-9.882
7.544
8.997
B
OC
OMZ
2
HETATM
B
OC
OMZ
1
2
1.00
1
O
5.48
-7.716
8.330
8.187
B
CG
OMZ
2
HETATM
B
CG
OMZ
1
2
1.00
1
C
4.75
-6.323
8.306
8.378
B
CD1
OMZ
2
HETATM
B
CD1
OMZ
1
2
1.00
1
C
6.27
-8.242
9.344
7.443
B
CD2
OMZ
2
HETATM
B
CD2
OMZ
1
2
1.00
1
C
4.53
-5.533
9.233
7.774
B
CE1
OMZ
2
HETATM
B
CE1
OMZ
1
2
1.00
1
C
5.42
-3.807
9.181
7.974
B
CL
OMZ
2
HETATM
B
CL
OMZ
1
2
1.00
1
CL
6.13
-7.446
10.288
6.822
B
CE2
OMZ
2
HETATM
B
CE2
OMZ
1
2
1.00
1
C
4.88
-6.096
10.214
6.951
B
CZ
OMZ
2
HETATM
B
CZ
OMZ
1
2
1.00
1
C
5.41
-5.297
11.112
6.265
B
OH
OMZ
2
HETATM
B
OH
OMZ
1
2
1.00
1
O
5.32
-7.152
5.626
5.773
B
N
ASN
3
ATOM
B
N
ASN
1
3
1.00
1
N
5.09
-6.027
4.893
5.159
B
CA
ASN
3
ATOM
B
CA
ASN
1
3
1.00
1
C
4.48
-4.949
5.764
4.582
B
C
ASN
3
ATOM
B
C
ASN
1
3
1.00
1
C
5.82
-3.791
5.606
4.924
B
O
ASN
3
ATOM
B
O
ASN
1
3
1.00
1
O
8.27
-6.611
3.936
4.112
B
CB
ASN
3
ATOM
B
CB
ASN
1
3
1.00
1
C
10.28
-7.764
3.109
4.597
B
CG
ASN
3
ATOM
B
CG
ASN
1
3
1.00
1
C
16.67
-8.758
2.980
3.827
B
OD1
ASN
3
ATOM
B
OD1
ASN
1
3
1.00
1
O
13.83
-7.649
2.655
5.821
B
ND2
ASN
3
ATOM
B
ND2
ASN
1
3
1.00
1
N
4.25
-5.320
6.687
3.689
B
N
GHP
4
HETATM
B
N
GHP
1
4
1.00
1
N
4.15
-4.354
7.514
2.974
B
CA
GHP
4
HETATM
B
CA
GHP
1
4
1.00
1
C
4.28
-4.670
7.473
1.478
B
C
GHP
4
HETATM
B
C
GHP
1
4
1.00
1
C
5.62
-5.806
7.705
1.065
B
O
GHP
4
HETATM
B
O
GHP
1
4
1.00
1
O
4.26
-4.332
8.960
3.420
B
C1
GHP
4
HETATM
B
C1
GHP
1
4
1.00
1
C
5.47
-3.721
9.914
2.654
B
C2
GHP
4
HETATM
B
C2
GHP
1
4
1.00
1
C
6.37
-3.703
11.235
3.038
B
C3
GHP
4
HETATM
B
C3
GHP
1
4
1.00
1
C
6.38
-4.241
11.633
4.246
B
C4
GHP
4
HETATM
B
C4
GHP
1
4
1.00
1
C
4.94
-4.434
12.935
4.572
B
O4
GHP
4
HETATM
A
B
O4
GHP
1
4
0.42
1
O
5.35
-3.827
12.962
4.733
B
O4
GHP
4
HETATM
B
B
O4
GHP
1
4
0.58
1
O
4.96
-4.800
10.664
5.037
B
C5
GHP
4
HETATM
B
C5
GHP
1
4
1.00
1
C
4.68
-4.857
9.343
4.645
B
C6
GHP
4
HETATM
B
C6
GHP
1
4
1.00
1
C
3.96
-3.599
7.264
0.700
B
N
GHP
5
HETATM
B
N
GHP
1
5
1.00
1
N
4.33
-3.580
7.548
-0.724
B
CA
GHP
5
HETATM
B
CA
GHP
1
5
1.00
1
C
3.99
-2.172
8.133
-0.997
B
C
GHP
5
HETATM
B
C
GHP
1
5
1.00
1
C
4.21
-1.291
7.954
-0.148
B
O
GHP
5
HETATM
B
O
GHP
1
5
1.00
1
O
4.41
-3.690
6.343
-1.632
B
C1
GHP
5
HETATM
B
C1
GHP
1
5
1.00
1
C
4.90
-4.601
6.355
-2.681
B
C2
GHP
5
HETATM
B
C2
GHP
1
5
1.00
1
C
5.43
-4.566
5.390
-3.699
B
C3
GHP
5
HETATM
B
C3
GHP
1
5
1.00
1
C
5.53
-3.645
4.368
-3.578
B
C4
GHP
5
HETATM
B
C4
GHP
1
5
1.00
1
C
6.79
-3.658
3.418
-4.592
B
O4
GHP
5
HETATM
B
O4
GHP
1
5
1.00
1
O
5.16
-2.801
4.287
-2.501
B
C5
GHP
5
HETATM
B
C5
GHP
1
5
1.00
1
C
4.65
-2.789
5.279
-1.562
B
C6
GHP
5
HETATM
B
C6
GHP
1
5
1.00
1
C
3.85
-1.911
8.711
-2.174
B
N
OMY
6
HETATM
B
N
OMY
1
6
1.00
1
N
4.29
-2.848
9.239
-3.121
B
CA
OMY
6
HETATM
B
CA
OMY
1
6
1.00
1
C
8.43
-3.155
12.225
2.213
B
OCZ
OMY
6
HETATM
B
OCZ
OMY
1
6
1.00
1
O
5.87
-1.847
11.821
0.294
B
CE2
OMY
6
HETATM
B
CE2
OMY
1
6
1.00
1
C
6.74
-4.222
11.763
0.099
B
CE1
OMY
6
HETATM
B
CE1
OMY
1
6
1.00
1
C
6.20
-3.069
11.938
0.867
B
CZ
OMY
6
HETATM
B
CZ
OMY
1
6
1.00
1
C
4.99
-2.875
11.302
-1.825
B
CG
OMY
6
HETATM
B
CG
OMY
1
6
1.00
1
C
4.92
-1.753
11.514
-1.050
B
CD2
OMY
6
HETATM
B
CD2
OMY
1
6
1.00
1
C
5.71
-4.135
11.441
-1.237
B
CD1
OMY
6
HETATM
B
CD1
OMY
1
6
1.00
1
C
4.82
-2.777
10.764
-3.238
B
CB
OMY
6
HETATM
B
CB
OMY
1
6
1.00
1
C
9.49
-5.809
11.897
0.799
B
CL
OMY
6
HETATM
B
CL
OMY
1
6
1.00
1
CL
4.14
-1.601
8.083
-4.803
B
O
OMY
6
HETATM
B
O
OMY
1
6
1.00
1
O
4.70
-2.728
8.443
-4.425
B
C
OMY
6
HETATM
B
C
OMY
1
6
1.00
1
C
4.94
-1.567
11.117
-3.864
B
ODE
OMY
6
HETATM
B
ODE
OMY
1
6
1.00
1
O
5.34
-3.856
8.138
-5.051
B
N
3FG
7
HETATM
B
N
3FG
1
7
1.00
1
N
8.87
-6.931
4.017
-3.745
B
OD1
3FG
7
HETATM
B
OD1
3FG
1
7
1.00
1
O
7.53
-6.727
4.836
-4.821
B
CD1
3FG
7
HETATM
B
CD1
3FG
1
7
1.00
1
C
6.73
-5.518
5.515
-4.847
B
CG1
3FG
7
HETATM
B
CG1
3FG
1
7
1.00
1
C
9.28
-7.642
4.953
-5.792
B
CZ
3FG
7
HETATM
B
CZ
3FG
1
7
1.00
1
C
8.85
-7.406
5.794
-6.882
B
CD2
3FG
7
HETATM
B
CD2
3FG
1
7
1.00
1
C
12.03
-8.315
5.926
-7.882
B
OD2
3FG
7
HETATM
B
OD2
3FG
1
7
1.00
1
O
8.33
-6.216
6.457
-6.924
B
CG2
3FG
7
HETATM
B
CG2
3FG
1
7
1.00
1
C
6.74
-5.274
6.361
-5.937
B
CB
3FG
7
HETATM
B
CB
3FG
1
7
1.00
1
C
7.01
-3.934
7.126
-6.064
B
CA
3FG
7
HETATM
B
CA
3FG
1
7
1.00
1
C
10.54
-3.665
7.651
-7.492
B
C
3FG
7
HETATM
B
C
3FG
1
7
1.00
1
C
16.26
-3.969
8.874
-7.672
B
O
3FG
7
HETATM
B
O
3FG
1
7
1.00
1
O
13.45
-3.301
6.866
-8.314
B
OXT
3FG
7
HETATM
B
OXT
3FG
1
7
1.00
1
O
7.64
0.873
14.541
4.419
C
C2
BGC
1
HETATM
C
C2
BGC
2
1.00
1
C
9.71
-0.348
15.372
4.676
C
C3
BGC
1
HETATM
C
C3
BGC
2
1.00
1
C
10.01
-0.857
15.973
3.358
C
C4
BGC
1
HETATM
C
C4
BGC
2
1.00
1
C
9.67
-1.038
14.826
2.306
C
C5
BGC
1
HETATM
C
C5
BGC
2
1.00
1
C
11.66
-1.382
15.323
0.903
C
C6
BGC
1
HETATM
C
C6
BGC
2
1.00
1
C
6.40
0.589
13.519
3.342
C
C1
BGC
1
HETATM
C
C1
BGC
2
1.00
1
C
8.28
1.264
13.926
5.606
C
O2
BGC
1
HETATM
C
O2
BGC
2
1.00
1
O
11.90
-0.076
16.378
5.656
C
O3
BGC
1
HETATM
C
O3
BGC
2
1.00
1
O
12.72
-2.084
16.600
3.676
C
O4
BGC
1
HETATM
C
O4
BGC
2
1.00
1
O
6.93
0.177
14.139
2.158
C
O5
BGC
1
HETATM
C
O5
BGC
2
1.00
1
O
13.33
-0.618
16.337
0.586
C
O6
BGC
1
HETATM
C
O6
BGC
2
1.00
1
O
9.99
2.594
14.501
6.233
C
C1
RER
2
HETATM
C
C1
RER
2
1.00
1
C
10.42
2.501
13.967
7.633
C
C2
RER
2
HETATM
C
C2
RER
2
1.00
1
C
8.93
3.042
12.546
7.655
C
C3
RER
2
HETATM
C
C3
RER
2
1.00
1
C
11.42
3.461
12.299
9.115
C
N3
RER
2
HETATM
C
N3
RER
2
1.00
1
N
8.44
2.074
11.505
7.356
C
C3A
RER
2
HETATM
C
C3A
RER
2
1.00
1
C
11.02
4.271
12.456
6.823
C
C4
RER
2
HETATM
C
C4
RER
2
1.00
1
C
13.78
5.133
13.449
7.548
C
O4
RER
2
HETATM
C
O4
RER
2
1.00
1
O
10.17
3.976
12.831
5.381
C
C5
RER
2
HETATM
C
C5
RER
2
1.00
1
C
11.52
3.608
14.232
5.409
C
O5
RER
2
HETATM
C
O5
RER
2
1.00
1
O
12.64
5.146
12.716
4.425
C
C5A
RER
2
HETATM
C
C5A
RER
2
1.00
1
C
5.94
-5.397
14.877
5.451
D
C2
BGC
1
HETATM
A
D
C2
BGC
2
0.42
1
C
5.44
-4.616
15.078
5.487
D
C2
BGC
1
HETATM
B
D
C2
BGC
2
0.58
1
C
7.19
-6.611
15.802
5.332
D
C3
BGC
1
HETATM
A
D
C3
BGC
2
0.42
1
C
6.23
-5.701
16.170
5.254
D
C3
BGC
1
HETATM
B
D
C3
BGC
2
0.58
1
C
7.82
-7.252
15.838
3.940
D
C4
BGC
1
HETATM
A
D
C4
BGC
2
0.42
1
C
8.18
-5.780
16.492
3.756
D
C4
BGC
1
HETATM
B
D
C4
BGC
2
0.58
1
C
7.60
-7.534
14.376
3.448
D
C5
BGC
1
HETATM
A
D
C5
BGC
2
0.42
1
C
8.17
-6.045
15.161
2.996
D
C5
BGC
1
HETATM
B
D
C5
BGC
2
0.58
1
C
8.34
-8.085
14.350
2.017
D
C6
BGC
1
HETATM
A
D
C6
BGC
2
0.42
1
C
9.37
-6.128
15.371
1.480
D
C6
BGC
1
HETATM
B
D
C6
BGC
2
0.58
1
C
5.81
-5.756
13.535
4.731
D
C1
BGC
1
HETATM
A
D
C1
BGC
2
0.42
1
C
5.75
-4.956
13.877
4.594
D
C1
BGC
1
HETATM
B
D
C1
BGC
2
0.58
1
C
6.91
-5.174
14.576
6.834
D
O2
BGC
1
HETATM
A
D
O2
BGC
2
0.42
1
O
6.54
-4.798
14.686
6.855
D
O2
BGC
1
HETATM
B
D
O2
BGC
2
0.58
1
O
7.08
-6.194
17.147
5.683
D
O3
BGC
1
HETATM
A
D
O3
BGC
2
0.42
1
O
7.05
-5.286
17.389
5.923
D
O3
BGC
1
HETATM
B
D
O3
BGC
2
0.58
1
O
8.50
-8.449
16.599
4.026
D
O4
BGC
1
HETATM
A
D
O4
BGC
2
0.42
1
O
9.53
-6.823
17.437
3.552
D
O4
BGC
1
HETATM
B
D
O4
BGC
2
0.58
1
O
5.79
-6.231
13.781
3.402
D
O5
BGC
1
HETATM
A
D
O5
BGC
2
0.42
1
O
7.37
-4.982
14.278
3.254
D
O5
BGC
1
HETATM
B
D
O5
BGC
2
0.58
1
O
10.40
-8.663
13.209
1.758
D
O6
BGC
1
HETATM
A
D
O6
BGC
2
0.42
1
O
13.21
-4.995
15.848
1.100
D
O6
BGC
1
HETATM
B
D
O6
BGC
2
0.58
1
O
6.72
-3.841
15.064
7.589
D
C1
RER
2
HETATM
D
C1
RER
2
1.00
1
C
5.49
-4.194
14.991
9.064
D
C2
RER
2
HETATM
D
C2
RER
2
1.00
1
C
4.36
-4.186
13.552
9.557
D
C3
RER
2
HETATM
D
C3
RER
2
1.00
1
C
4.25
-4.171
13.582
11.066
D
N3
RER
2
HETATM
D
N3
RER
2
1.00
1
N
4.71
-5.429
12.825
9.179
D
C3A
RER
2
HETATM
D
C3A
RER
2
1.00
1
C
4.82
-2.926
12.864
9.102
D
C4
RER
2
HETATM
D
C4
RER
2
1.00
1
C
6.41
-1.804
13.496
9.783
D
O4
RER
2
HETATM
D
O4
RER
2
1.00
1
O
6.02
-2.802
12.946
7.578
D
C5
RER
2
HETATM
D
C5
RER
2
1.00
1
C
7.20
-2.698
14.343
7.234
D
O5
RER
2
HETATM
D
O5
RER
2
1.00
1
O
6.98
-1.502
12.289
7.077
D
C5A
RER
2
HETATM
D
C5A
RER
2
1.00
1
C
5.43
3.729
4.356
5.611
A
CL
CL
21
HETATM
E
CL
CL
3
1.00
1
CL
9.54
0.266
11.337
10.479
B
CL
CL
20
HETATM
F
CL
CL
3
1.00
1
CL
12.69
-6.353
9.518
-3.615
B
CL
CL
10
HETATM
G
CL
CL
3
1.00
1
CL
14.89
-8.710
8.182
3.728
B
C
LAC
23
HETATM
H
C
LAC
4
1.00
1
C
17.02
-8.318
9.269
2.742
B
CA
LAC
23
HETATM
H
CA
LAC
4
1.00
1
C
22.89
-9.053
8.971
1.449
B
CB
LAC
23
HETATM
H
CB
LAC
4
1.00
1
C
12.70
-9.586
8.542
4.624
B
O
LAC
23
HETATM
H
O
LAC
4
1.00
1
O
23.66
-8.664
10.551
3.263
B
OHN
LAC
23
HETATM
H
OHN
LAC
4
1.00
1
O
10.57
-8.222
7.003
3.462
B
OXT
LAC
23
HETATM
H
OXT
LAC
4
1.00
1
O
15.67
12.570
8.498
-2.824
A
O
HOH
2001
HETATM
I
O
HOH
5
1.00
1
O
7.53
7.050
10.322
6.147
A
O
HOH
2002
HETATM
I
O
HOH
5
1.00
1
O
33.71
14.153
9.053
-5.324
A
O
HOH
2003
HETATM
I
O
HOH
5
1.00
1
O
38.96
14.081
7.334
-1.166
A
O
HOH
2004
HETATM
I
O
HOH
5
1.00
1
O
23.60
10.395
13.734
-3.437
A
O
HOH
2005
HETATM
I
O
HOH
5
1.00
1
O
30.79
9.574
14.587
-5.626
A
O
HOH
2006
HETATM
I
O
HOH
5
1.00
1
O
14.85
3.645
15.246
1.968
A
O
HOH
2007
HETATM
B
I
O
HOH
5
0.67
1
O
9.39
8.174
12.097
-6.576
A
O
HOH
2008
HETATM
I
O
HOH
5
1.00
1
O
8.33
9.002
11.892
-1.703
A
O
HOH
2009
HETATM
I
O
HOH
5
1.00
1
O
70.26
0.948
-2.826
10.519
A
O
HOH
2010
HETATM
I
O
HOH
5
1.00
1
O
25.20
1.334
15.618
10.428
A
O
HOH
2011
HETATM
I
O
HOH
5
1.00
1
O
5.47
3.637
3.637
0.000
A
O
HOH
2012
HETATM
I
O
HOH
5
0.50
1
O
19.00
-0.915
-1.803
1.044
A
O
HOH
2013
HETATM
I
O
HOH
5
1.00
1
O
10.66
-3.813
3.973
1.838
A
O
HOH
2014
HETATM
I
O
HOH
5
1.00
1
O
20.48
-3.298
2.138
3.628
A
O
HOH
2015
HETATM
I
O
HOH
5
1.00
1
O
11.67
-0.619
2.994
8.543
A
O
HOH
2016
HETATM
I
O
HOH
5
1.00
1
O
44.64
-2.983
3.557
6.242
A
O
HOH
2017
HETATM
I
O
HOH
5
1.00
1
O
11.16
3.343
2.613
8.318
A
O
HOH
2018
HETATM
I
O
HOH
5
1.00
1
O
23.70
5.368
0.262
8.774
A
O
HOH
2019
HETATM
I
O
HOH
5
1.00
1
O
7.68
1.244
-2.125
4.174
A
O
HOH
2020
HETATM
I
O
HOH
5
1.00
1
O
14.41
-0.419
15.822
8.359
A
O
HOH
2021
HETATM
I
O
HOH
5
1.00
1
O
14.10
2.267
15.855
0.738
A
O
HOH
2022
HETATM
A
I
O
HOH
5
0.33
1
O
38.84
3.068
14.046
13.625
A
O
HOH
2023
HETATM
I
O
HOH
5
1.00
1
O
29.10
-1.632
18.333
7.976
A
O
HOH
2024
HETATM
I
O
HOH
5
1.00
1
O
44.07
-0.656
19.289
1.171
A
O
HOH
2025
HETATM
I
O
HOH
5
1.00
1
O
32.96
1.820
18.336
5.702
A
O
HOH
2026
HETATM
I
O
HOH
5
1.00
1
O
27.51
7.666
13.078
7.284
A
O
HOH
2027
HETATM
I
O
HOH
5
1.00
1
O
35.66
4.234
16.934
4.002
A
O
HOH
2028
HETATM
I
O
HOH
5
1.00
1
O
24.60
4.461
14.387
10.783
A
O
HOH
2029
HETATM
I
O
HOH
5
1.00
1
O
38.94
3.825
-0.965
10.815
A
O
HOH
2030
HETATM
I
O
HOH
5
1.00
1
O
29.21
10.147
17.147
-5.732
A
O
HOH
2031
HETATM
I
O
HOH
5
1.00
1
O
9.84
-3.830
5.216
8.022
B
O
HOH
2001
HETATM
J
O
HOH
5
1.00
1
O
30.83
-9.776
6.828
-0.899
B
O
HOH
2002
HETATM
J
O
HOH
5
1.00
1
O
29.57
-11.331
3.756
-10.152
B
O
HOH
2003
HETATM
J
O
HOH
5
1.00
1
O
44.10
-12.448
10.591
-0.793
B
O
HOH
2005
HETATM
J
O
HOH
5
1.00
1
O
21.79
-7.387
8.458
-1.020
B
O
HOH
2006
HETATM
J
O
HOH
5
1.00
1
O
23.69
-3.600
3.602
-7.378
B
O
HOH
2007
HETATM
J
O
HOH
5
1.00
1
O
15.06
-1.829
13.810
-3.978
B
O
HOH
2008
HETATM
J
O
HOH
5
1.00
1
O
18.90
-9.316
2.814
-3.525
B
O
HOH
2009
HETATM
J
O
HOH
5
1.00
1
O
26.12
-6.164
4.044
0.542
B
O
HOH
2010
HETATM
J
O
HOH
5
1.00
1
O
24.81
-2.783
18.373
5.682
B
O
HOH
2011
HETATM
J
O
HOH
5
1.00
1
O
30.59
-4.399
15.000
-1.605
B
O
HOH
2012
HETATM
J
O
HOH
5
1.00
1
O
45.98
-7.657
18.747
1.398
B
O
HOH
2013
HETATM
J
O
HOH
5
1.00
1
O
34.18
-9.099
10.939
-0.831
B
O
HOH
2014
HETATM
J
O
HOH
5
1.00
1
O
26.02
-10.594
4.192
-7.502
B
O
HOH
2015
HETATM
J
O
HOH
5
1.00
1
O
21.70
-8.437
5.235
1.091
B
O
HOH
2017
HETATM
J
O
HOH
5
1.00
1
O
0.035211
0.000000
0.000000
0.000000
0.035211
0.000000
0.000000
0.000000
0.015214
0.00000
0.00000
0.00000
Loll, P.J.
Kaplan, J.
Selinsky, B.
Axelsen, P.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
28.400
28.400
65.730
C8 H9 N O4
183.161
(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C6 H12 O6
180.156
beta-D-glucopyranose
beta-D-glucose; D-glucose; glucose
D-saccharide, beta linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C8 H9 N O3
167.162
(2R)-amino(4-hydroxyphenyl)ethanoic acid
D-peptide linking
H2 O
18.015
WATER
non-polymer
C3 H6 O3
90.078
LACTIC ACID
non-polymer
C7 H15 N O2
145.199
N-methyl-D-leucine
D-peptide linking
C9 H10 Cl N O4
231.633
n
(betaR)-3-chloro-beta-hydroxy-L-tyrosine
L-peptide linking
C9 H10 Cl N O4
231.633
(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
D-peptide linking
C7 H15 N O3
161.199
vancosamine
(1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose
L-saccharide, alpha linking
N
1
N
N
N
2
N
O
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
O
Y
8
N
C
Y
9
N
C
N
10
S
C
N
11
N
C
N
12
N
O
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
N
N
24
S
C
N
25
N
C
N
26
N
O
N
27
N
C
N
28
N
C
N
29
N
O
N
30
N
N
N
31
N
O
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
R
C
N
41
S
C
N
42
S
C
N
43
R
C
N
44
N
C
N
45
R
C
N
46
N
O
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
O
N
51
N
O
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
CL
N
65
N
N
N
66
R
C
N
67
N
C
N
68
N
O
N
69
N
O
Y
70
N
C
Y
71
N
C
Y
72
N
C
Y
73
N
C
N
74
N
O
Y
75
N
C
Y
76
N
C
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
C
N
90
R
C
N
91
N
C
N
92
N
O
N
93
N
O
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
N
C
N
103
R
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
O
Y
129
N
C
Y
130
N
C
Y
131
N
C
Y
132
N
C
Y
133
N
C
Y
134
N
C
N
135
R
C
N
136
N
CL
N
137
N
O
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
R
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
R
C
N
157
N
O
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
CL
Y
163
N
C
Y
164
N
C
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
R
C
N
177
N
C
N
178
S
C
N
179
N
N
N
180
N
C
N
181
S
C
N
182
N
O
N
183
S
C
N
184
N
O
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
1
N
sing
N
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
doub
Y
6
N
sing
N
7
N
sing
Y
8
N
doub
Y
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
Y
72
N
doub
Y
73
N
sing
Y
74
N
sing
N
75
N
sing
Y
76
N
doub
N
77
N
sing
N
78
N
sing
Y
79
N
sing
N
80
N
sing
Y
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
Y
123
N
sing
Y
124
N
doub
Y
125
N
doub
Y
126
N
sing
Y
127
N
doub
N
128
N
sing
Y
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
Y
154
N
doub
Y
155
N
sing
Y
156
N
sing
Y
157
N
doub
Y
158
N
doub
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
42
4714
4719
10.1021/jm990361t
10579833
Vancomycin binding to low-affinity ligands: delineating a minimum set of interactions necessary for high-affinity binding.
1999
10.2210/pdb1c0q/pdb
pdb_00001c0q
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1997-05-05
MAR scanner 300 mm plate
SINGLE WAVELENGTH
M
x-ray
1
0.978
1.0
X12B
NSLS
0.978
SYNCHROTRON
NSLS BEAMLINE X12B
1149.977
VANCOMYCIN
2
syn
polymer
323.340
vancosamine-(1-2)-beta-D-glucopyranose
2
man
branched
35.453
CHLORIDE ION
3
syn
non-polymer
90.078
LACTIC ACID
1
syn
non-polymer
18.015
water
46
nat
water
no
yes
(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)
XXNGGYX
A,B
polypeptide(L)
n
n
n
n
n
n
n
1
2.88
57.31
VAPOR DIFFUSION, HANGING DROP
4.6
Sodium chloride, 2-acetoxy-D-propanoic acid, pH 4.6,
vapor diffusion/hanging drop, temperature 291K
291
atom_site
chem_comp
entity
entity_poly
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_special_symmetry
pdbx_validate_close_contact
software
struct_asym
struct_conn
struct_site
struct_site_gen
atom_site
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Structure summary
Derived calculations
Advisory
Atomic model
Data collection
Derived calculations
Polymer sequence
Refinement description
Structure summary
Atomic model
Data collection
Database references
Derived calculations
Structure summary
1
0
1999-07-30
1
1
2008-04-26
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
1
5
2013-03-27
1
6
2013-04-10
2
0
2020-07-29
3
0
2023-11-15
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_alt_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.occupancy
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.auth_seq_id_2
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
A
BGC
8
n
C
BGC
1
A
RER
9
n
C
RER
2
B
BGC
8
n
D
BGC
1
B
RER
9
n
D
RER
2
DGlcpb
b-D-glucopyranose
b-D-Glcp
Glc
CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH ACETATE
CRYSTAL STRUCTURE OF VANCOMYCIN WITH D-LACTIC ACID
CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH DI-ACETYL-LYS-D-ALA-D-ALA
SOLUTION STRUCTURE OF A82846B COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT
CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON
CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXD WITH TDP AND DESVANCOSAMINYL VANCOMYCIN
CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXED WITH TDP AND VANCOMYCIN
CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN
CRYSTAL STRUCTURE OF TDP-VANCOSAMINYLTRANSFERASE GTFD COMPLEXED WITH TDP AND DESVANCOSAMINYL VANCOMYCIN.
CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH ACETATE
RCSB
Y
RCSB
1999-07-20
REL
oligosaccharide
WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1
2
PDB2Glycan
1.1.0
WURCS
[][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}
2
PDB-CARE
LINUCS
C1
O2
RER
BGC
2
1
2
O1
HO2
sing
n
n
CL
CHLORIDE ION
LAC
LACTIC ACID
HOH
water
31958
NOCARDIA ORIENTALIS
AMYCOLATOPSIS ORIENTALIS
sample
VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS
A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS
FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE
AND VANCOSAMINE.
HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE
SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER.
Antibiotic
VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE,
GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8
AND 9) ON RESIDUE 4.
VANCOMYCIN
Glycopeptide
CL
21
3
CL
CL
21
A
CL
20
3
CL
CL
20
B
CL
20
3
CL
CL
10
B
LAC
23
4
LAC
LAC
23
B
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2004
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2015
5
HOH
HOH
2030
A
HOH
2016
5
HOH
HOH
2031
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2005
5
HOH
HOH
2005
B
HOH
2006
5
HOH
HOH
2006
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2008
5
HOH
HOH
2008
B
HOH
2009
5
HOH
HOH
2009
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2012
5
HOH
HOH
2012
B
HOH
2013
5
HOH
HOH
2013
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2010
5
HOH
HOH
2015
B
HOH
2017
5
HOH
HOH
2017
B
MLU
1
n
1
MLU
1
A
OMZ
2
n
2
OMZ
2
A
ASN
3
n
3
ASN
3
A
GHP
4
n
4
GHP
4
A
GHP
5
n
5
GHP
5
A
OMY
6
n
6
OMY
6
A
3FG
7
n
7
3FG
7
A
MLU
1
n
1
MLU
1
B
OMZ
2
n
2
OMZ
2
B
ASN
3
n
3
ASN
3
B
GHP
4
n
4
GHP
4
B
GHP
5
n
5
GHP
5
B
OMY
6
n
6
OMY
6
B
3FG
7
n
7
3FG
7
B
0.119
0.139
1002
author_defined_assembly
2
dimeric
software_defined_assembly
PISA
2
dimeric
1060
-19
2540
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
x+1/2,-y+1/2,-z+1/4
crystal symmetry operation
14.2000000000
14.2000000000
16.4325000000
1
A
HOH
2012
I
HOH
1
D
D
O2
O5
BGC
RER
1
2
2.16
B
1
A
ASN
3
-99.63
-68.39
Refinement was carried out against F-squared using SHELXL-93.
Molecular geometry and atomic displacement parameters were restrained
throughout. Independent vancomycin monomers were restrained to have
similar 1-2 and 1-3 distances; restraints were also imposed to
limit deviations from planarity in rings and sp2 systems.
Along-bond components of anisotropic displacement parameters
were subjected to restraints. Solvent water atoms were restrained
to be approximately isotropic and were made subject to anti-bumping
restraints. Conjugate gradient refinement was used throughout,
except at the last stages, when blocked least squares was used.
0.139
0.119
0.119
1.00
20.00
1002
15091
13845
92.0
RANDOM
1
THROUGHOUT
ENGH & HUBER
1.00
20.00
46
257
51
0
160
0.019
1.000
20.000
1C0Q
15091
13845
2.000
0.05400
1
34.7000
11.800
92.0
0.05500
1.00
1.04
1
2.40
65.0
refinement
SHELXL
data reduction
DENZO
data scaling
SCALEPACK
COMPLEX OF VANCOMYCIN WITH 2-ACETOXY-D-PROPANOIC ACID
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
covale
1.348
both
A
MLU
1
A
C
MLU
1
1_555
A
OMZ
2
A
N
OMZ
2
1_555
covale
1.347
both
A
OMZ
2
A
C
OMZ
2
1_555
A
ASN
3
A
N
ASN
3
1_555
covale
1.395
none
A
OMZ
2
A
OH
OMZ
2
1_555
A
GHP
4
A
C5
GHP
4
1_555
covale
1.337
both
A
ASN
3
A
C
ASN
3
1_555
A
GHP
4
A
N
GHP
4
1_555
covale
1.347
both
A
GHP
4
A
C
GHP
4
1_555
A
GHP
5
A
N
GHP
5
1_555
covale
1.393
none
A
GHP
4
A
C3
GHP
4
1_555
A
OMY
6
A
OCZ
OMY
6
1_555
covale
1.432
one
A
GHP
4
A
O4
GHP
4
1_555
C
BGC
1
C
C1
BGC
1_555
covale
1.329
both
A
GHP
5
A
C
GHP
5
1_555
A
OMY
6
A
N
OMY
6
1_555
covale
1.508
one
A
GHP
5
A
C3
GHP
5
1_555
A
3FG
7
A
CG1
3FG
7
1_555
covale
1.321
both
A
OMY
6
A
C
OMY
6
1_555
A
3FG
7
A
N
3FG
7
1_555
covale
1.344
both
B
MLU
1
B
C
MLU
1
1_555
B
OMZ
2
B
N
OMZ
2
1_555
covale
1.340
both
B
OMZ
2
B
C
OMZ
2
1_555
B
ASN
3
B
N
ASN
3
1_555
covale
1.398
none
B
OMZ
2
B
OH
OMZ
2
1_555
B
GHP
4
B
C5
GHP
4
1_555
covale
1.337
both
B
ASN
3
B
C
ASN
3
1_555
B
GHP
4
B
N
GHP
4
1_555
covale
1.340
both
B
GHP
4
B
C
GHP
4
1_555
B
GHP
5
B
N
GHP
5
1_555
covale
1.400
none
B
GHP
4
B
C3
GHP
4
1_555
B
OMY
6
B
OCZ
OMY
6
1_555
covale
1.460
one
B
B
B
GHP
4
B
O4
GHP
4
1_555
D
BGC
1
D
C1
BGC
1_555
covale
1.460
one
A
A
B
GHP
4
B
O4
GHP
4
1_555
D
BGC
1
D
C1
BGC
1_555
covale
1.337
both
B
GHP
5
B
C
GHP
5
1_555
B
OMY
6
B
N
OMY
6
1_555
covale
1.497
one
B
GHP
5
B
C3
GHP
5
1_555
B
3FG
7
B
CG1
3FG
7
1_555
covale
1.326
both
B
OMY
6
B
C
OMY
6
1_555
B
3FG
7
B
N
3FG
7
1_555
covale
1.579
both
C
BGC
1
C
O2
BGC
1_555
C
RER
2
C
C1
RER
1_555
covale
1.264
both
B
D
BGC
1
D
O2
BGC
1_555
D
RER
2
D
C1
RER
1_555
covale
1.608
both
A
D
BGC
1
D
O2
BGC
1_555
D
RER
2
D
C1
RER
1_555
ANTIBIOTIC
ANTIBIOTIC, GLYCOPEPTIDE ANTIBIOTIC
A
GHP
5
A
GHP
5
1
A
OMY
6
A
OMY
6
7.26
B
GHP
5
B
GHP
5
1
B
OMY
6
B
OMY
6
20.37
NOR00681
NOR
1
NOR00681
1
7
1C0Q
1
7
NOR00681
A
1
1
7
1
7
1C0Q
1
7
NOR00681
B
1
1
7
96
P 43 21 2