6.90
10.069
8.783
-4.064
A
N
MLU
1
HETATM
A
N
MLU
1
1
1.00
1
N
9.50
10.403
10.145
-4.714
A
CN
MLU
1
HETATM
A
CN
MLU
1
1
1.00
1
C
6.10
8.822
8.790
-3.288
A
CA
MLU
1
HETATM
A
CA
MLU
1
1
1.00
1
C
5.40
7.668
9.208
-4.207
A
C
MLU
1
HETATM
A
C
MLU
1
1
1.00
1
C
7.61
7.501
8.637
-5.270
A
O
MLU
1
HETATM
A
O
MLU
1
1
1.00
1
O
6.28
8.515
7.390
-2.735
A
CB
MLU
1
HETATM
A
CB
MLU
1
1
1.00
1
C
6.94
9.554
6.764
-1.785
A
CG
MLU
1
HETATM
A
CG
MLU
1
1
1.00
1
C
11.62
9.770
7.580
-0.535
A
CD1
MLU
1
HETATM
A
CD1
MLU
1
1
1.00
1
C
10.69
9.069
5.400
-1.412
A
CD2
MLU
1
HETATM
A
CD2
MLU
1
1
1.00
1
C
4.64
6.847
10.201
-3.759
A
N
OMZ
2
HETATM
A
N
OMZ
1
2
1.00
1
N
4.76
5.785
10.692
-4.598
A
CA
OMZ
2
HETATM
A
CA
OMZ
1
2
1.00
1
C
4.38
4.457
9.929
-4.453
A
C
OMZ
2
HETATM
A
C
OMZ
1
2
1.00
1
C
5.33
3.510
10.253
-5.183
A
O
OMZ
2
HETATM
A
O
OMZ
1
2
1.00
1
O
5.31
5.488
12.229
-4.394
A
CB
OMZ
2
HETATM
A
CB
OMZ
1
2
1.00
1
C
5.68
6.692
12.973
-4.520
A
OC
OMZ
2
HETATM
A
OC
OMZ
1
2
1.00
1
O
4.85
4.835
12.491
-3.075
A
CG
OMZ
2
HETATM
A
CG
OMZ
1
2
1.00
1
C
5.70
3.444
12.719
-3.055
A
CD1
OMZ
2
HETATM
A
CD1
OMZ
1
2
1.00
1
C
5.36
5.562
12.534
-1.884
A
CD2
OMZ
2
HETATM
A
CD2
OMZ
1
2
1.00
1
C
5.90
2.785
12.880
-1.834
A
CE1
OMZ
2
HETATM
A
CE1
OMZ
1
2
1.00
1
C
10.81
1.116
13.208
-1.851
A
CL
OMZ
2
HETATM
A
CL
OMZ
1
2
1.00
1
CL
5.84
4.877
12.687
-0.681
A
CE2
OMZ
2
HETATM
A
CE2
OMZ
1
2
1.00
1
C
5.73
3.497
12.824
-0.674
A
CZ
OMZ
2
HETATM
A
CZ
OMZ
1
2
1.00
1
C
6.25
2.815
12.890
0.560
A
OH
OMZ
2
HETATM
A
OH
OMZ
1
2
1.00
1
O
4.40
4.412
8.934
-3.581
A
N
ASN
3
ATOM
A
N
ASN
1
3
1.00
1
N
4.04
3.289
7.979
-3.557
A
CA
ASN
3
ATOM
A
CA
ASN
1
3
1.00
1
C
3.85
2.259
8.259
-2.479
A
C
ASN
3
ATOM
A
C
ASN
1
3
1.00
1
C
4.64
1.137
8.662
-2.814
A
O
ASN
3
ATOM
A
O
ASN
1
3
1.00
1
O
4.52
3.802
6.549
-3.650
A
CB
ASN
3
ATOM
A
CB
ASN
1
3
1.00
1
C
4.87
4.897
6.208
-2.637
A
CG
ASN
3
ATOM
A
CG
ASN
1
3
1.00
1
C
4.86
5.205
6.960
-1.693
A
OD1
ASN
3
ATOM
A
OD1
ASN
1
3
1.00
1
O
5.76
5.532
5.066
-2.884
A
ND2
ASN
3
ATOM
A
ND2
ASN
1
3
1.00
1
N
4.04
2.640
8.072
-1.211
A
N
GHP
4
HETATM
A
N
GHP
1
4
1.00
1
N
3.95
1.692
8.095
-0.108
A
CA
GHP
4
HETATM
A
CA
GHP
1
4
1.00
1
C
3.87
1.863
6.843
0.727
A
C
GHP
4
HETATM
A
C
GHP
1
4
1.00
1
C
4.54
2.977
6.437
1.045
A
O
GHP
4
HETATM
A
O
GHP
1
4
1.00
1
O
4.29
1.696
9.346
0.733
A
C1
GHP
4
HETATM
A
C1
GHP
1
4
1.00
1
C
4.41
1.106
9.392
1.977
A
C2
GHP
4
HETATM
A
C2
GHP
1
4
1.00
1
C
5.03
1.118
10.555
2.758
A
C3
GHP
4
HETATM
A
C3
GHP
1
4
1.00
1
C
5.45
1.661
11.709
2.246
A
C4
GHP
4
HETATM
A
C4
GHP
1
4
1.00
1
C
6.11
1.775
12.896
2.999
A
O4
GHP
4
HETATM
A
O4
GHP
1
4
1.00
1
O
5.27
2.235
11.689
0.987
A
C5
GHP
4
HETATM
A
C5
GHP
1
4
1.00
1
C
4.56
2.258
10.511
0.229
A
C6
GHP
4
HETATM
A
C6
GHP
1
4
1.00
1
C
3.99
0.725
6.269
1.168
A
N
GHP
5
HETATM
A
N
GHP
1
5
1.00
1
N
4.11
0.702
5.366
2.248
A
CA
GHP
5
HETATM
A
CA
GHP
1
5
1.00
1
C
4.24
-0.714
5.455
2.920
A
C
GHP
5
HETATM
A
C
GHP
1
5
1.00
1
C
5.13
-1.645
5.836
2.187
A
O
GHP
5
HETATM
A
O
GHP
1
5
1.00
1
O
4.29
0.896
3.864
2.008
A
C1
GHP
5
HETATM
A
C1
GHP
1
5
1.00
1
C
4.23
1.920
3.187
2.682
A
C2
GHP
5
HETATM
A
C2
GHP
1
5
1.00
1
C
5.03
1.980
1.792
2.728
A
C3
GHP
5
HETATM
A
C3
GHP
1
5
1.00
1
C
4.93
1.021
1.076
2.005
A
C4
GHP
5
HETATM
A
C4
GHP
1
5
1.00
1
C
6.53
1.072
-0.310
2.079
A
O4
GHP
5
HETATM
A
O4
GHP
1
5
1.00
1
O
5.43
0.068
1.737
1.274
A
C5
GHP
5
HETATM
A
C5
GHP
1
5
1.00
1
C
4.76
0.004
3.118
1.234
A
C6
GHP
5
HETATM
A
C6
GHP
1
5
1.00
1
C
4.33
-0.863
5.049
4.180
A
N
OMY
6
HETATM
A
N
OMY
1
6
1.00
1
N
4.63
0.135
4.630
5.096
A
CA
OMY
6
HETATM
A
CA
OMY
1
6
1.00
1
C
5.87
0.605
10.620
4.041
A
OCZ
OMY
6
HETATM
A
OCZ
OMY
1
6
1.00
1
O
5.07
-0.777
8.983
5.074
A
CE2
OMY
6
HETATM
A
CE2
OMY
1
6
1.00
1
C
5.33
1.615
8.645
5.056
A
CE1
OMY
6
HETATM
A
CE1
OMY
1
6
1.00
1
C
5.14
0.478
9.407
4.730
A
CZ
OMY
6
HETATM
A
CZ
OMY
1
6
1.00
1
C
4.95
0.153
6.927
5.960
A
CG
OMY
6
HETATM
A
CG
OMY
1
6
1.00
1
C
4.86
-0.939
7.721
5.689
A
CD2
OMY
6
HETATM
A
CD2
OMY
1
6
1.00
1
C
5.25
1.447
7.434
5.686
A
CD1
OMY
6
HETATM
A
CD1
OMY
1
6
1.00
1
C
5.00
0.041
5.492
6.410
A
CB
OMY
6
HETATM
A
CB
OMY
1
6
1.00
1
C
7.45
3.230
9.189
4.722
A
CL
OMY
6
HETATM
A
CL
OMY
1
6
1.00
1
CL
6.22
-1.003
2.503
5.241
A
O
OMY
6
HETATM
A
O
OMY
1
6
1.00
1
O
4.61
0.059
3.114
5.351
A
C
OMY
6
HETATM
A
C
OMY
1
6
1.00
1
C
5.81
-1.195
5.249
7.038
A
ODE
OMY
6
HETATM
A
ODE
OMY
1
6
1.00
1
O
4.87
1.214
2.514
5.605
A
N
3FG
7
HETATM
A
N
3FG
1
7
1.00
1
N
5.25
4.679
1.253
1.806
A
OD1
3FG
7
HETATM
A
OD1
3FG
1
7
1.00
1
O
4.84
4.305
0.894
3.054
A
CD1
3FG
7
HETATM
A
CD1
3FG
1
7
1.00
1
C
4.51
3.016
1.132
3.536
A
CG1
3FG
7
HETATM
A
CG1
3FG
1
7
1.00
1
C
4.65
5.281
0.269
3.850
A
CZ
3FG
7
HETATM
A
CZ
3FG
1
7
1.00
1
C
5.02
4.974
-0.111
5.141
A
CD2
3FG
7
HETATM
A
CD2
3FG
1
7
1.00
1
C
5.95
5.864
-0.698
5.992
A
OD2
3FG
7
HETATM
A
OD2
3FG
1
7
1.00
1
O
5.42
3.701
0.124
5.657
A
CG2
3FG
7
HETATM
A
CG2
3FG
1
7
1.00
1
C
5.19
2.724
0.749
4.876
A
CB
3FG
7
HETATM
A
CB
3FG
1
7
1.00
1
C
5.48
1.354
1.061
5.463
A
CA
3FG
7
HETATM
A
CA
3FG
1
7
1.00
1
C
6.57
1.069
0.290
6.780
A
C
3FG
7
HETATM
A
C
3FG
1
7
1.00
1
C
7.98
1.141
0.934
7.876
A
O
3FG
7
HETATM
A
O
3FG
1
7
1.00
1
O
7.97
0.811
-0.927
6.629
A
OXT
3FG
7
HETATM
A
OXT
3FG
1
7
1.00
1
O
7.12
-13.035
5.858
5.897
B
N
MLU
1
HETATM
B
N
MLU
1
1
1.00
1
N
8.09
-13.338
6.419
7.262
B
CN
MLU
1
HETATM
B
CN
MLU
1
1
1.00
1
C
7.47
-11.694
6.210
5.374
B
CA
MLU
1
HETATM
B
CA
MLU
1
1
1.00
1
C
6.98
-10.680
5.641
6.381
B
C
MLU
1
HETATM
B
C
MLU
1
1
1.00
1
C
8.18
-10.904
4.547
6.923
B
O
MLU
1
HETATM
B
O
MLU
1
1
1.00
1
O
10.23
-11.481
5.470
4.056
B
CB
MLU
1
HETATM
B
CB
MLU
1
1
1.00
1
C
10.91
-12.415
5.795
2.911
B
CG
MLU
1
HETATM
B
CG
MLU
1
1
1.00
1
C
15.34
-12.377
7.254
2.545
B
CD1
MLU
1
HETATM
B
CD1
MLU
1
1
1.00
1
C
12.50
-12.199
4.973
1.725
B
CD2
MLU
1
HETATM
B
CD2
MLU
1
1
1.00
1
C
6.71
-9.589
6.381
6.622
B
N
OMZ
2
HETATM
B
N
OMZ
1
2
1.00
1
N
6.45
-8.679
5.972
7.669
B
CA
OMZ
2
HETATM
B
CA
OMZ
1
2
1.00
1
C
6.00
-7.316
5.484
7.113
B
C
OMZ
2
HETATM
B
C
OMZ
1
2
1.00
1
C
6.81
-6.505
4.999
7.902
B
O
OMZ
2
HETATM
B
O
OMZ
1
2
1.00
1
O
7.21
-8.469
7.066
8.775
B
CB
OMZ
2
HETATM
B
CB
OMZ
1
2
1.00
1
C
8.97
-9.823
7.382
9.125
B
OC
OMZ
2
HETATM
B
OC
OMZ
1
2
1.00
1
O
6.36
-7.678
8.235
8.264
B
CG
OMZ
2
HETATM
B
CG
OMZ
1
2
1.00
1
C
5.50
-6.279
8.238
8.415
B
CD1
OMZ
2
HETATM
B
CD1
OMZ
1
2
1.00
1
C
7.14
-8.273
9.249
7.529
B
CD2
OMZ
2
HETATM
B
CD2
OMZ
1
2
1.00
1
C
5.20
-5.526
9.217
7.792
B
CE1
OMZ
2
HETATM
B
CE1
OMZ
1
2
1.00
1
C
7.60
-3.797
9.187
7.965
B
CL
OMZ
2
HETATM
B
CL
OMZ
1
2
1.00
1
CL
6.60
-7.504
10.240
6.896
B
CE2
OMZ
2
HETATM
B
CE2
OMZ
1
2
1.00
1
C
5.49
-6.121
10.190
6.997
B
CZ
OMZ
2
HETATM
B
CZ
OMZ
1
2
1.00
1
C
6.10
-5.369
11.102
6.282
B
OH
OMZ
2
HETATM
B
OH
OMZ
1
2
1.00
1
O
5.86
-7.136
5.557
5.806
B
N
ASN
3
ATOM
B
N
ASN
1
3
1.00
1
N
5.86
-6.031
4.837
5.123
B
CA
ASN
3
ATOM
B
CA
ASN
1
3
1.00
1
C
5.24
-4.941
5.747
4.586
B
C
ASN
3
ATOM
B
C
ASN
1
3
1.00
1
C
6.51
-3.767
5.596
4.927
B
O
ASN
3
ATOM
B
O
ASN
1
3
1.00
1
O
8.50
-6.611
3.949
4.036
B
CB
ASN
3
ATOM
B
CB
ASN
1
3
1.00
1
C
11.71
-7.774
3.085
4.481
B
CG
ASN
3
ATOM
B
CG
ASN
1
3
1.00
1
C
16.51
-8.796
2.918
3.683
B
OD1
ASN
3
ATOM
B
OD1
ASN
1
3
1.00
1
O
14.31
-7.678
2.532
5.619
B
ND2
ASN
3
ATOM
B
ND2
ASN
1
3
1.00
1
N
4.81
-5.323
6.678
3.703
B
N
GHP
4
HETATM
B
N
GHP
1
4
1.00
1
N
4.48
-4.380
7.519
2.973
B
CA
GHP
4
HETATM
B
CA
GHP
1
4
1.00
1
C
4.76
-4.670
7.474
1.491
B
C
GHP
4
HETATM
B
C
GHP
1
4
1.00
1
C
6.10
-5.825
7.695
1.055
B
O
GHP
4
HETATM
B
O
GHP
1
4
1.00
1
O
4.90
-4.361
8.965
3.447
B
C1
GHP
4
HETATM
B
C1
GHP
1
4
1.00
1
C
6.40
-3.791
9.935
2.639
B
C2
GHP
4
HETATM
B
C2
GHP
1
4
1.00
1
C
7.07
-3.812
11.270
3.017
B
C3
GHP
4
HETATM
B
C3
GHP
1
4
1.00
1
C
6.99
-4.304
11.630
4.253
B
C4
GHP
4
HETATM
B
C4
GHP
1
4
1.00
1
C
6.29
-4.468
12.973
4.596
B
O4
GHP
4
HETATM
A
B
O4
GHP
1
4
0.65
1
O
5.72
-3.823
12.986
4.766
B
O4
GHP
4
HETATM
B
B
O4
GHP
1
4
0.35
1
O
5.70
-4.856
10.665
5.064
B
C5
GHP
4
HETATM
B
C5
GHP
1
4
1.00
1
C
5.43
-4.901
9.323
4.655
B
C6
GHP
4
HETATM
B
C6
GHP
1
4
1.00
1
C
4.57
-3.616
7.252
0.698
B
N
GHP
5
HETATM
B
N
GHP
1
5
1.00
1
N
4.74
-3.589
7.533
-0.711
B
CA
GHP
5
HETATM
B
CA
GHP
1
5
1.00
1
C
4.49
-2.178
8.148
-1.003
B
C
GHP
5
HETATM
B
C
GHP
1
5
1.00
1
C
5.24
-1.289
7.927
-0.141
B
O
GHP
5
HETATM
B
O
GHP
1
5
1.00
1
O
4.95
-3.688
6.345
-1.652
B
C1
GHP
5
HETATM
B
C1
GHP
1
5
1.00
1
C
5.76
-4.614
6.376
-2.714
B
C2
GHP
5
HETATM
B
C2
GHP
1
5
1.00
1
C
6.23
-4.596
5.423
-3.724
B
C3
GHP
5
HETATM
B
C3
GHP
1
5
1.00
1
C
6.14
-3.652
4.363
-3.616
B
C4
GHP
5
HETATM
B
C4
GHP
1
5
1.00
1
C
7.54
-3.696
3.417
-4.613
B
O4
GHP
5
HETATM
B
O4
GHP
1
5
1.00
1
O
5.94
-2.829
4.270
-2.541
B
C5
GHP
5
HETATM
B
C5
GHP
1
5
1.00
1
C
5.42
-2.821
5.283
-1.583
B
C6
GHP
5
HETATM
B
C6
GHP
1
5
1.00
1
C
4.69
-1.924
8.738
-2.162
B
N
OMY
6
HETATM
B
N
OMY
1
6
1.00
1
N
4.85
-2.878
9.255
-3.100
B
CA
OMY
6
HETATM
B
CA
OMY
1
6
1.00
1
C
8.76
-3.301
12.268
2.232
B
OCZ
OMY
6
HETATM
B
OCZ
OMY
1
6
1.00
1
O
6.95
-1.885
11.867
0.326
B
CE2
OMY
6
HETATM
B
CE2
OMY
1
6
1.00
1
C
7.98
-4.284
11.844
0.063
B
CE1
OMY
6
HETATM
B
CE1
OMY
1
6
1.00
1
C
6.90
-3.158
11.987
0.859
B
CZ
OMY
6
HETATM
B
CZ
OMY
1
6
1.00
1
C
5.68
-2.882
11.341
-1.823
B
CG
OMY
6
HETATM
B
CG
OMY
1
6
1.00
1
C
5.91
-1.739
11.537
-1.032
B
CD2
OMY
6
HETATM
B
CD2
OMY
1
6
1.00
1
C
6.52
-4.155
11.520
-1.266
B
CD1
OMY
6
HETATM
B
CD1
OMY
1
6
1.00
1
C
5.51
-2.767
10.794
-3.230
B
CB
OMY
6
HETATM
B
CB
OMY
1
6
1.00
1
C
11.35
-5.918
12.035
0.677
B
CL
OMY
6
HETATM
B
CL
OMY
1
6
1.00
1
CL
4.97
-1.646
8.124
-4.833
B
O
OMY
6
HETATM
B
O
OMY
1
6
1.00
1
O
5.09
-2.759
8.506
-4.430
B
C
OMY
6
HETATM
B
C
OMY
1
6
1.00
1
C
5.82
-1.518
11.117
-3.841
B
ODE
OMY
6
HETATM
B
ODE
OMY
1
6
1.00
1
O
6.01
-3.893
8.181
-5.035
B
N
3FG
7
HETATM
B
N
3FG
1
7
1.00
1
N
10.08
-6.969
3.993
-3.774
B
OD1
3FG
7
HETATM
B
OD1
3FG
1
7
1.00
1
O
8.49
-6.752
4.804
-4.808
B
CD1
3FG
7
HETATM
B
CD1
3FG
1
7
1.00
1
C
7.43
-5.540
5.555
-4.859
B
CG1
3FG
7
HETATM
B
CG1
3FG
1
7
1.00
1
C
9.87
-7.685
4.940
-5.818
B
CZ
3FG
7
HETATM
B
CZ
3FG
1
7
1.00
1
C
9.60
-7.459
5.801
-6.908
B
CD2
3FG
7
HETATM
B
CD2
3FG
1
7
1.00
1
C
14.29
-8.383
5.891
-7.890
B
OD2
3FG
7
HETATM
B
OD2
3FG
1
7
1.00
1
O
9.22
-6.274
6.505
-6.962
B
CG2
3FG
7
HETATM
B
CG2
3FG
1
7
1.00
1
C
7.33
-5.298
6.392
-5.958
B
CB
3FG
7
HETATM
B
CB
3FG
1
7
1.00
1
C
7.32
-3.973
7.160
-6.081
B
CA
3FG
7
HETATM
B
CA
3FG
1
7
1.00
1
C
9.75
-3.758
7.868
-7.493
B
C
3FG
7
HETATM
B
C
3FG
1
7
1.00
1
C
14.32
-4.088
9.051
-7.622
B
O
3FG
7
HETATM
B
O
3FG
1
7
1.00
1
O
12.56
-3.389
7.070
-8.346
B
OXT
3FG
7
HETATM
B
OXT
3FG
1
7
1.00
1
O
8.61
0.746
14.583
4.298
C
C2
BGC
1
HETATM
C
C2
BGC
2
1.00
1
C
10.31
-0.533
15.380
4.544
C
C3
BGC
1
HETATM
C
C3
BGC
2
1.00
1
C
10.15
-0.989
16.008
3.237
C
C4
BGC
1
HETATM
C
C4
BGC
2
1.00
1
C
10.41
-1.092
14.869
2.106
C
C5
BGC
1
HETATM
C
C5
BGC
2
1.00
1
C
12.16
-1.359
15.409
0.695
C
C6
BGC
1
HETATM
C
C6
BGC
2
1.00
1
C
7.01
0.548
13.574
3.264
C
C1
BGC
1
HETATM
C
C1
BGC
2
1.00
1
C
8.99
1.142
13.982
5.533
C
O2
BGC
1
HETATM
C
O2
BGC
2
1.00
1
O
13.64
-0.297
16.425
5.535
C
O3
BGC
1
HETATM
C
O3
BGC
2
1.00
1
O
13.83
-2.277
16.533
3.413
C
O4
BGC
1
HETATM
C
O4
BGC
2
1.00
1
O
8.24
0.170
14.189
2.041
C
O5
BGC
1
HETATM
C
O5
BGC
2
1.00
1
O
15.07
-0.545
16.391
0.363
C
O6
BGC
1
HETATM
C
O6
BGC
2
1.00
1
O
9.99
2.249
14.579
6.203
C
C1
RER
2
HETATM
C
C1
RER
2
1.00
1
C
10.14
2.263
14.044
7.606
C
C2
RER
2
HETATM
C
C2
RER
2
1.00
1
C
9.57
2.894
12.639
7.637
C
C3
RER
2
HETATM
C
C3
RER
2
1.00
1
C
11.84
3.224
12.363
9.105
C
N3
RER
2
HETATM
C
N3
RER
2
1.00
1
N
9.33
1.962
11.554
7.199
C
C3A
RER
2
HETATM
C
C3A
RER
2
1.00
1
C
10.97
4.178
12.644
6.823
C
C4
RER
2
HETATM
C
C4
RER
2
1.00
1
C
12.16
4.994
13.652
7.532
C
O4
RER
2
HETATM
C
O4
RER
2
1.00
1
O
10.91
3.910
13.084
5.399
C
C5
RER
2
HETATM
C
C5
RER
2
1.00
1
C
11.67
3.397
14.425
5.460
C
O5
RER
2
HETATM
C
O5
RER
2
1.00
1
O
13.36
5.090
13.136
4.464
C
C5A
RER
2
HETATM
C
C5A
RER
2
1.00
1
C
6.59
-5.469
14.898
5.480
D
C2
BGC
1
HETATM
A
D
C2
BGC
2
0.65
1
C
6.56
-4.665
15.080
5.498
D
C2
BGC
1
HETATM
B
D
C2
BGC
2
0.35
1
C
7.85
-6.641
15.888
5.401
D
C3
BGC
1
HETATM
A
D
C3
BGC
2
0.65
1
C
7.57
-5.736
16.197
5.276
D
C3
BGC
1
HETATM
B
D
C3
BGC
2
0.35
1
C
8.96
-7.231
16.014
4.007
D
C4
BGC
1
HETATM
A
D
C4
BGC
2
0.65
1
C
8.52
-5.915
16.452
3.798
D
C4
BGC
1
HETATM
B
D
C4
BGC
2
0.35
1
C
8.69
-7.516
14.551
3.430
D
C5
BGC
1
HETATM
A
D
C5
BGC
2
0.65
1
C
8.80
-6.258
15.061
3.064
D
C5
BGC
1
HETATM
B
D
C5
BGC
2
0.35
1
C
9.59
-8.137
14.487
2.084
D
C6
BGC
1
HETATM
A
D
C6
BGC
2
0.65
1
C
9.59
-6.605
15.179
1.582
D
C6
BGC
1
HETATM
B
D
C6
BGC
2
0.35
1
C
6.77
-5.735
13.625
4.755
D
C1
BGC
1
HETATM
A
D
C1
BGC
2
0.65
1
C
6.41
-4.912
13.909
4.658
D
C1
BGC
1
HETATM
B
D
C1
BGC
2
0.35
1
C
6.89
-5.206
14.622
6.858
D
O2
BGC
1
HETATM
A
D
O2
BGC
2
0.65
1
O
7.80
-4.798
14.714
6.882
D
O2
BGC
1
HETATM
B
D
O2
BGC
2
0.35
1
O
8.29
-6.134
17.207
5.761
D
O3
BGC
1
HETATM
A
D
O3
BGC
2
0.65
1
O
6.98
-5.242
17.392
5.957
D
O3
BGC
1
HETATM
B
D
O3
BGC
2
0.35
1
O
10.08
-8.417
16.750
4.031
D
O4
BGC
1
HETATM
A
D
O4
BGC
2
0.65
1
O
9.91
-7.000
17.367
3.591
D
O4
BGC
1
HETATM
B
D
O4
BGC
2
0.35
1
O
7.12
-6.228
13.879
3.418
D
O5
BGC
1
HETATM
A
D
O5
BGC
2
0.65
1
O
7.64
-5.040
14.212
3.296
D
O5
BGC
1
HETATM
B
D
O5
BGC
2
0.35
1
O
11.76
-8.631
13.316
1.660
D
O6
BGC
1
HETATM
A
D
O6
BGC
2
0.65
1
O
12.44
-7.867
15.309
1.318
D
O6
BGC
1
HETATM
B
D
O6
BGC
2
0.35
1
O
7.05
-3.984
15.090
7.542
D
C1
RER
2
HETATM
D
C1
RER
2
1.00
1
C
6.60
-4.253
15.023
9.060
D
C2
RER
2
HETATM
D
C2
RER
2
1.00
1
C
5.23
-4.219
13.550
9.589
D
C3
RER
2
HETATM
D
C3
RER
2
1.00
1
C
5.46
-4.154
13.619
11.092
D
N3
RER
2
HETATM
D
N3
RER
2
1.00
1
N
5.28
-5.468
12.805
9.218
D
C3A
RER
2
HETATM
D
C3A
RER
2
1.00
1
C
6.14
-2.942
12.888
9.069
D
C4
RER
2
HETATM
D
C4
RER
2
1.00
1
C
7.34
-1.834
13.537
9.720
D
O4
RER
2
HETATM
D
O4
RER
2
1.00
1
O
6.91
-2.870
12.990
7.534
D
C5
RER
2
HETATM
D
C5
RER
2
1.00
1
C
7.95
-2.827
14.375
7.179
D
O5
RER
2
HETATM
D
O5
RER
2
1.00
1
O
7.80
-1.612
12.347
6.989
D
C5A
RER
2
HETATM
D
C5A
RER
2
1.00
1
C
10.56
0.253
11.398
10.472
A
CL
CL
20
HETATM
E
CL
CL
3
1.00
1
CL
6.48
3.746
4.402
5.692
A
CL
CL
21
HETATM
F
CL
CL
3
1.00
1
CL
13.87
-6.379
9.532
-3.563
B
CL
CL
22
HETATM
G
CL
CL
3
1.00
1
CL
11.47
-8.832
8.198
3.762
B
C
LAC
23
HETATM
H
C
LAC
4
1.00
1
C
12.73
-8.829
9.166
2.621
B
CA
LAC
23
HETATM
H
CA
LAC
4
1.00
1
C
13.74
-8.103
10.428
3.005
B
CB
LAC
23
HETATM
H
CB
LAC
4
1.00
1
C
10.49
-8.216
7.106
3.582
B
O
LAC
23
HETATM
H
O
LAC
4
1.00
1
O
14.62
-8.407
8.637
1.412
B
OHN
LAC
23
HETATM
H
OHN
LAC
4
1.00
1
O
10.39
-9.552
8.504
4.759
B
OXT
LAC
23
HETATM
H
OXT
LAC
4
1.00
1
O
15.99
12.638
8.513
-2.820
A
O
HOH
2001
HETATM
I
O
HOH
5
1.00
1
O
9.21
10.385
7.096
-6.183
A
O
HOH
2002
HETATM
I
O
HOH
5
1.00
1
O
24.71
10.368
13.781
-3.371
A
O
HOH
2003
HETATM
I
O
HOH
5
1.00
1
O
24.94
6.453
15.046
1.583
A
O
HOH
2004
HETATM
A
I
O
HOH
5
0.60
1
O
11.67
8.094
13.725
0.525
A
O
HOH
2005
HETATM
B
I
O
HOH
5
0.40
1
O
14.29
8.195
12.081
-6.633
A
O
HOH
2006
HETATM
I
O
HOH
5
1.00
1
O
10.01
8.992
11.892
-1.642
A
O
HOH
2007
HETATM
I
O
HOH
5
1.00
1
O
29.64
3.477
15.399
1.815
A
O
HOH
2008
HETATM
I
O
HOH
5
1.00
1
O
22.66
9.522
14.735
-5.719
A
O
HOH
2009
HETATM
I
O
HOH
5
1.00
1
O
32.00
-6.155
3.914
0.449
A
O
HOH
2010
HETATM
I
O
HOH
5
1.00
1
O
36.49
9.161
14.282
5.399
A
O
HOH
2011
HETATM
I
O
HOH
5
1.00
1
O
7.10
3.644
3.644
0.000
A
O
HOH
2012
HETATM
I
O
HOH
5
0.50
1
O
10.82
-3.761
3.899
1.867
A
O
HOH
2013
HETATM
I
O
HOH
5
1.00
1
O
21.41
-0.824
-1.842
1.044
A
O
HOH
2014
HETATM
I
O
HOH
5
1.00
1
O
19.31
-3.236
2.055
3.655
A
O
HOH
2015
HETATM
I
O
HOH
5
1.00
1
O
13.46
-0.467
3.101
8.668
A
O
HOH
2016
HETATM
I
O
HOH
5
1.00
1
O
31.41
-3.014
2.338
7.569
A
O
HOH
2017
HETATM
I
O
HOH
5
1.00
1
O
16.70
5.400
0.472
8.846
A
O
HOH
2018
HETATM
I
O
HOH
5
1.00
1
O
11.10
3.447
2.611
8.373
A
O
HOH
2019
HETATM
I
O
HOH
5
1.00
1
O
24.16
0.776
-0.201
10.312
A
O
HOH
2020
HETATM
I
O
HOH
5
1.00
1
O
16.57
-0.557
15.908
8.255
A
O
HOH
2021
HETATM
I
O
HOH
5
1.00
1
O
36.42
1.981
18.270
5.937
A
O
HOH
2022
HETATM
I
O
HOH
5
1.00
1
O
21.42
4.883
14.184
10.646
A
O
HOH
2023
HETATM
I
O
HOH
5
1.00
1
O
20.33
7.568
13.085
7.188
A
O
HOH
2024
HETATM
I
O
HOH
5
1.00
1
O
25.34
4.270
16.940
4.231
A
O
HOH
2025
HETATM
I
O
HOH
5
1.00
1
O
11.68
-3.800
5.162
8.009
B
O
HOH
2001
HETATM
J
O
HOH
5
1.00
1
O
51.10
-9.551
10.035
-7.805
B
O
HOH
2002
HETATM
J
O
HOH
5
1.00
1
O
32.33
-5.487
1.467
6.830
B
O
HOH
2003
HETATM
J
O
HOH
5
1.00
1
O
61.17
-7.065
10.962
-6.336
B
O
HOH
2004
HETATM
J
O
HOH
5
1.00
1
O
80.53
-9.203
2.013
-9.411
B
O
HOH
2005
HETATM
J
O
HOH
5
1.00
1
O
27.24
-7.370
8.081
-1.120
B
O
HOH
2006
HETATM
B
J
O
HOH
5
0.85
1
O
8.78
-2.124
1.281
-4.276
B
O
HOH
2007
HETATM
J
O
HOH
5
1.00
1
O
18.06
-1.815
13.837
-4.085
B
O
HOH
2008
HETATM
J
O
HOH
5
1.00
1
O
18.91
-9.344
2.714
-3.639
B
O
HOH
2009
HETATM
J
O
HOH
5
1.00
1
O
28.92
-10.541
4.042
-7.541
B
O
HOH
2010
HETATM
J
O
HOH
5
1.00
1
O
47.70
-3.626
4.113
-7.816
B
O
HOH
2011
HETATM
J
O
HOH
5
1.00
1
O
29.05
-6.249
9.420
-9.531
B
O
HOH
2012
HETATM
A
J
O
HOH
5
0.60
1
O
23.06
-7.557
7.646
-9.844
B
O
HOH
2013
HETATM
B
J
O
HOH
5
0.40
1
O
26.77
-10.874
12.717
4.047
B
O
HOH
2014
HETATM
J
O
HOH
5
1.00
1
O
29.38
-3.013
18.420
5.232
B
O
HOH
2015
HETATM
J
O
HOH
5
1.00
1
O
40.73
-10.475
16.115
6.046
B
O
HOH
2016
HETATM
J
O
HOH
5
1.00
1
O
33.80
-4.062
15.613
1.437
B
O
HOH
2017
HETATM
A
J
O
HOH
5
1.00
1
O
23.24
-8.471
5.265
1.132
B
O
HOH
2018
HETATM
J
O
HOH
5
1.00
1
O
16.80
-10.985
10.623
5.465
B
O
HOH
2019
HETATM
J
O
HOH
5
1.00
1
O
9.96
-9.501
6.254
-0.948
B
O
HOH
2020
HETATM
A
J
O
HOH
5
0.15
1
O
0.035162
0.000000
0.000000
0.000000
0.035162
0.000000
0.000000
0.000000
0.015142
0.00000
0.00000
0.00000
Loll, P.J.
Kaplan, J.
Selinsky, B.
Axelsen, P.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
28.440
28.440
66.040
C8 H9 N O4
183.161
(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C6 H12 O6
180.156
beta-D-glucopyranose
beta-D-glucose; D-glucose; glucose
D-saccharide, beta linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C8 H9 N O3
167.162
(2R)-amino(4-hydroxyphenyl)ethanoic acid
D-peptide linking
H2 O
18.015
WATER
non-polymer
C3 H6 O3
90.078
LACTIC ACID
non-polymer
C7 H15 N O2
145.199
N-methyl-D-leucine
D-peptide linking
C9 H10 Cl N O4
231.633
n
(betaR)-3-chloro-beta-hydroxy-L-tyrosine
L-peptide linking
C9 H10 Cl N O4
231.633
(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
D-peptide linking
C7 H15 N O3
161.199
vancosamine
(1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose
L-saccharide, alpha linking
N
1
N
N
N
2
N
O
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
O
Y
8
N
C
Y
9
N
C
N
10
S
C
N
11
N
C
N
12
N
O
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
N
N
24
S
C
N
25
N
C
N
26
N
O
N
27
N
C
N
28
N
C
N
29
N
O
N
30
N
N
N
31
N
O
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
R
C
N
41
S
C
N
42
S
C
N
43
R
C
N
44
N
C
N
45
R
C
N
46
N
O
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
O
N
51
N
O
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
CL
N
65
N
N
N
66
R
C
N
67
N
C
N
68
N
O
N
69
N
O
Y
70
N
C
Y
71
N
C
Y
72
N
C
Y
73
N
C
N
74
N
O
Y
75
N
C
Y
76
N
C
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
C
N
90
R
C
N
91
N
C
N
92
N
O
N
93
N
O
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
N
C
N
103
R
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
O
Y
129
N
C
Y
130
N
C
Y
131
N
C
Y
132
N
C
Y
133
N
C
Y
134
N
C
N
135
R
C
N
136
N
CL
N
137
N
O
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
R
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
R
C
N
157
N
O
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
CL
Y
163
N
C
Y
164
N
C
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
R
C
N
177
N
C
N
178
S
C
N
179
N
N
N
180
N
C
N
181
S
C
N
182
N
O
N
183
S
C
N
184
N
O
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
1
N
sing
N
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
doub
Y
6
N
sing
N
7
N
sing
Y
8
N
doub
Y
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
Y
72
N
doub
Y
73
N
sing
Y
74
N
sing
N
75
N
sing
Y
76
N
doub
N
77
N
sing
N
78
N
sing
Y
79
N
sing
N
80
N
sing
Y
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
Y
123
N
sing
Y
124
N
doub
Y
125
N
doub
Y
126
N
sing
Y
127
N
doub
N
128
N
sing
Y
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
Y
154
N
doub
Y
155
N
sing
Y
156
N
sing
Y
157
N
doub
Y
158
N
doub
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
42
4714
10.1021/JM990361T
10579833
Vancomycin Binding to Low-Affinity Ligands: Delineating a Minimum Set of Interactions Necessary for High-Affinity Binding.
1999
10.2210/pdb1c0r/pdb
pdb_00001c0r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1996-09-20
CUSTOM-MADE
SINGLE WAVELENGTH
M
x-ray
1
0.918
1.0
A1
CHESS
0.918
SYNCHROTRON
CHESS BEAMLINE A1
1149.977
VANCOMYCIN
2
man
polymer
323.340
vancosamine-(1-2)-beta-D-glucopyranose
2
man
branched
35.453
CHLORIDE ION
3
syn
non-polymer
90.078
LACTIC ACID
1
syn
non-polymer
18.015
water
45
nat
water
no
yes
(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)
XXNGGYX
A,B
polypeptide(L)
n
n
n
n
n
n
n
sample
31958
AMYCOLATOPSIS ORIENTALIS
1
2.90
57.63
4.6
SODIUM CHLORIDE, LACTIC ACID, PH 4.6, VAPOR DIFFUSION/HANGING DROP, TEMPERATURE 291K
atom_site
chem_comp
entity
entity_poly
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule
pdbx_nonpoly_scheme
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_special_symmetry
pdbx_validate_close_contact
software
struct_asym
struct_conn
struct_site
struct_site_gen
atom_site
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Advisory
Atomic model
Data collection
Derived calculations
Polymer sequence
Refinement description
Structure summary
Atomic model
Data collection
Database references
Derived calculations
Structure summary
1
0
1999-07-30
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
2
0
2020-07-29
3
0
2023-11-15
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_alt_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.occupancy
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.auth_seq_id_2
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
A
BGC
8
n
C
BGC
1
A
RER
9
n
C
RER
2
B
BGC
8
n
D
BGC
1
B
RER
9
n
D
RER
2
DGlcpb
b-D-glucopyranose
b-D-Glcp
Glc
CRYSTAL STRUCTURE OF VANCOMYCIN
CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH 2-ACETOXY-D-PROPANOIC ACID
CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH DI-ACETYL-LYS-D-ALA-D-ALA
SOLUTION STRUCTURE OF A82846B COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT
CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON
CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXD WITH TDP AND DESVANCOSAMINYL VANCOMYCIN
CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXED WITH TDP AND VANCOMYCIN
CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN
CRYSTAL STRUCTURE OF TDP-VANCOSAMINYLTRANSFERASE GTFD COMPLEXED WITH TDP AND DESVANCOSAMINYL VANCOMYCIN.
CRYSTAL STRUCTURE OF VANCOMYCIN
RCSB
Y
RCSB
1999-07-20
REL
oligosaccharide
WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1
2
PDB2Glycan
1.1.0
WURCS
[][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}
2
PDB-CARE
LINUCS
C1
O2
RER
BGC
2
1
2
O1
HO2
sing
n
n
CL
CHLORIDE ION
LAC
LACTIC ACID
HOH
water
VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS
A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS
FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE
AND VANCOSAMINE.
HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE
SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER.
Antibiotic
VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE,
GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8
AND 9) ON RESIDUE 4.
VANCOMYCIN
Glycopeptide
CL
20
3
CL
CL
20
A
CL
21
3
CL
CL
21
A
CL
22
3
CL
CL
22
B
LAC
23
4
LAC
LAC
23
B
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2004
5
HOH
HOH
2004
B
HOH
2005
5
HOH
HOH
2005
B
HOH
2006
5
HOH
HOH
2006
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2008
5
HOH
HOH
2008
B
HOH
2009
5
HOH
HOH
2009
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2012
5
HOH
HOH
2012
B
HOH
2013
5
HOH
HOH
2013
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2015
5
HOH
HOH
2015
B
HOH
2016
5
HOH
HOH
2016
B
HOH
2017
5
HOH
HOH
2017
B
HOH
2018
5
HOH
HOH
2018
B
HOH
2019
5
HOH
HOH
2019
B
HOH
2020
5
HOH
HOH
2020
B
MLU
1
n
1
MLU
1
A
OMZ
2
n
2
OMZ
2
A
ASN
3
n
3
ASN
3
A
GHP
4
n
4
GHP
4
A
GHP
5
n
5
GHP
5
A
OMY
6
n
6
OMY
6
A
3FG
7
n
7
3FG
7
A
MLU
1
n
1
MLU
1
B
OMZ
2
n
2
OMZ
2
B
ASN
3
n
3
ASN
3
B
GHP
4
n
4
GHP
4
B
GHP
5
n
5
GHP
5
B
OMY
6
n
6
OMY
6
B
3FG
7
n
7
3FG
7
B
0.114
0.142
934
software_defined_assembly
PISA
4
tetrameric
4170
-68.4
3680
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_455
y-1/2,-x+1/2,z+1/4
crystal symmetry operation
-14.2200000000
14.2200000000
16.5100000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_455
x-1/2,-y+1/2,-z+1/4
crystal symmetry operation
-14.2200000000
14.2200000000
16.5100000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
33.0200000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
2012
I
HOH
1
D
D
O2
O5
BGC
RER
1
2
2.02
B
1
D
D
C2
C1
BGC
RER
1
2
2.15
B
1
A
ASN
3
-100.24
-68.57
REFINEMENT WAS CARRIED OUT AGAINST F -SQUARED USING SHELXL-93. MOLECULAR GEOMETRY AND ATOMIC DISPLACEMENT PARAMETERS WERE RESTRAINED THROUGHOUT. INDEPENDENT VANCOMYCIN MONOMERS WERE RESTRAINED TO HAVE SIMILAR 1-2 AND 1-3 DISTANCES; RESTRAINTS WERE ALSO IMPOSED TO LIMIT DEVIATIONS FROM PLANARITY IN RINGS AND SP2 SYSTEMS. ALONG-BOND COMPONENTS OF ANISOTROPIC DISPLACEMENT PARAMETERS WERE SUBJECTED TO RESTRAINTS. SOLVENT WATER ATOMS WERE RESTRAINED TO BE APPROXIMATELY ISOTROPIC AND WERE MADE SUBJECT TO ANTI-BUMPING RESTRAINTS. CONJUGATE GRADIENT REFINEMENT WAS USED THROUGHOUT, EXCEPT AT THE LAST STAGES, WHEN BLOCKED LEAST SQUARES WAS USED.
0.142
0.114
1.00
20.00
934
14301
97.0
RANDOM
1
THROUGHOUT
0.000
ENGH & HUBER
1.00
20.00
45
256
51
0
160
0.019
1.000
20.000
1C0R
13896
2.000
0.05200
1
29.8000
16.400
97.0
0.06500
1.00
1.04
1
1.90
54.0
refinement
SHELXL
data reduction
DENZO
data scaling
SCALEPACK
COMPLEX OF VANCOMYCIN WITH D-LACTIC ACID
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
covale
1.364
both
A
MLU
1
A
C
MLU
1
1_555
A
OMZ
2
A
N
OMZ
2
1_555
covale
1.324
both
A
OMZ
2
A
C
OMZ
2
1_555
A
ASN
3
A
N
ASN
3
1_555
covale
1.400
none
A
OMZ
2
A
OH
OMZ
2
1_555
A
GHP
4
A
C5
GHP
4
1_555
covale
1.337
both
A
ASN
3
A
C
ASN
3
1_555
A
GHP
4
A
N
GHP
4
1_555
covale
1.349
both
A
GHP
4
A
C
GHP
4
1_555
A
GHP
5
A
N
GHP
5
1_555
covale
1.383
none
A
GHP
4
A
C3
GHP
4
1_555
A
OMY
6
A
OCZ
OMY
6
1_555
covale
1.427
one
A
GHP
4
A
O4
GHP
4
1_555
C
BGC
1
C
C1
BGC
1_555
covale
1.332
both
A
GHP
5
A
C
GHP
5
1_555
A
OMY
6
A
N
OMY
6
1_555
covale
1.470
one
A
GHP
5
A
C3
GHP
5
1_555
A
3FG
7
A
CG1
3FG
7
1_555
covale
1.326
both
A
OMY
6
A
C
OMY
6
1_555
A
3FG
7
A
N
3FG
7
1_555
covale
1.340
both
B
MLU
1
B
C
MLU
1
1_555
B
OMZ
2
B
N
OMZ
2
1_555
covale
1.321
both
B
OMZ
2
B
C
OMZ
2
1_555
B
ASN
3
B
N
ASN
3
1_555
covale
1.392
none
B
OMZ
2
B
OH
OMZ
2
1_555
B
GHP
4
B
C5
GHP
4
1_555
covale
1.339
both
B
ASN
3
B
C
ASN
3
1_555
B
GHP
4
B
N
GHP
4
1_555
covale
1.338
both
B
GHP
4
B
C
GHP
4
1_555
B
GHP
5
B
N
GHP
5
1_555
covale
1.369
none
B
GHP
4
B
C3
GHP
4
1_555
B
OMY
6
B
OCZ
OMY
6
1_555
covale
1.432
one
B
B
B
GHP
4
B
O4
GHP
4
1_555
D
BGC
1
D
C1
BGC
1_555
covale
1.434
one
A
A
B
GHP
4
B
O4
GHP
4
1_555
D
BGC
1
D
C1
BGC
1_555
covale
1.325
both
B
GHP
5
B
C
GHP
5
1_555
B
OMY
6
B
N
OMY
6
1_555
covale
1.482
one
B
GHP
5
B
C3
GHP
5
1_555
B
3FG
7
B
CG1
3FG
7
1_555
covale
1.326
both
B
OMY
6
B
C
OMY
6
1_555
B
3FG
7
B
N
3FG
7
1_555
covale
1.425
both
C
BGC
1
C
O2
BGC
1_555
C
RER
2
C
C1
RER
1_555
covale
1.113
both
B
D
BGC
1
D
O2
BGC
1_555
D
RER
2
D
C1
RER
1_555
covale
1.477
both
A
D
BGC
1
D
O2
BGC
1_555
D
RER
2
D
C1
RER
1_555
ANTIBIOTIC
ANTIBIOTIC, GLYCOPEPTIDE ANTIBIOTIC
A
GHP
5
A
GHP
5
1
A
OMY
6
A
OMY
6
6.16
B
GHP
5
B
GHP
5
1
B
OMY
6
B
OMY
6
19.74
NOR00681
NOR
1
NOR00681
1
7
1C0R
1
7
NOR00681
A
1
1
7
1
7
1C0R
1
7
NOR00681
B
1
1
7
96
P 43 21 2