0.024752 0.000000 0.000000 0.000000 0.011891 0.000000 0.000000 0.000000 0.007446 0.00000 0.00000 0.00000 Langedijk, A.C. Spinelli, S. Anguille, C. Hermans, P. Nederlof, J. Butenandt, J. Honegger, A. Cambillau, C. Pluckthun, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 40.400 84.100 134.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C20 H28 O3 316.435 TRAZEOLIDE non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 292 855 869 10.1006/jmbi.1999.3101 10525411 Insight into odorant perception: the crystal structure and binding characteristics of antibody fragments directed against the musk odorant traseolide. 1999 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293.0 1 IMAGE PLATE 1995-11-05 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 23391.602 PROTEIN (ANTIBODY FRAGMENT FAB) 1 man polymer 23841.791 PROTEIN (ANTIBODY FRAGMENT FAB) 1 man polymer 316.435 TRAZEOLIDE 1 syn non-polymer 18.015 water 114 nat water no no DIELTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFKGLIYHGTNLEDGVPSRFSGSGSGADYSLTISSLES EDFADYYCVQYVQFPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEA DIELTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFKGLIYHGTNLEDGVPSRFSGSGSGADYSLTISSLES EDFADYYCVQYVQFPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEA A polypeptide(L) no no QVQLQESGPGLVKPSQSLSLTCTVTGYSITSDYAWNWIRQFPGNKLEWMGYISYSGSTSYSPSLKSRISLTRDTSKNQFF LQLNSVTTEDTATYYCVTSLTWLLRRKRSYWGQGTTVTVSSASTKGPSVYPLAPGSKAAASMVTLGCLVKGYFPEPVTVT WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPE QVQLQESGPGLVKPSQSLSLTCTVTGYSITSDYAWNWIRQFPGNKLEWMGYISYSGSTSYSPSLKSRISLTRDTSKNQFF LQLNSVTTEDTATYYCVTSLTWLLRRKRSYWGQGTTVTVSSASTKGPSVYPLAPGSKAAASMVTLGCLVKGYFPEPVTVT WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPE B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus house mouse Mus sample 10090 Mus musculus 1 2.41 49.05 VAPOR DIFFUSION, HANGING DROP 4.0 PEG 8000, SODIUM ACETATE, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 20.0K 293.0 pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues exptl_crystal_grow repository Initial release Version format compliance Version format compliance Advisory Experimental preparation 1 0 1999-08-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-01-31 1 4 2018-02-28 _exptl_crystal_grow.temp RCSB Y RCSB 1999-07-20 REL TRZ TRAZEOLIDE HOH water TRZ 121 3 TRZ TRZ 215 A HOH 1 4 HOH HOH 216 A HOH 2 4 HOH HOH 217 A HOH 3 4 HOH HOH 218 A HOH 4 4 HOH HOH 219 A HOH 5 4 HOH HOH 220 A HOH 7 4 HOH HOH 221 A HOH 9 4 HOH HOH 222 A HOH 10 4 HOH HOH 223 A HOH 12 4 HOH HOH 224 A HOH 13 4 HOH HOH 225 A HOH 14 4 HOH HOH 226 A HOH 16 4 HOH HOH 227 A HOH 22 4 HOH HOH 228 A HOH 23 4 HOH HOH 229 A HOH 24 4 HOH HOH 230 A HOH 25 4 HOH HOH 231 A HOH 26 4 HOH HOH 232 A HOH 27 4 HOH HOH 233 A HOH 28 4 HOH HOH 234 A HOH 33 4 HOH HOH 235 A HOH 34 4 HOH HOH 236 A HOH 35 4 HOH HOH 237 A HOH 36 4 HOH HOH 238 A HOH 38 4 HOH HOH 239 A HOH 39 4 HOH HOH 240 A HOH 40 4 HOH HOH 241 A HOH 41 4 HOH HOH 242 A HOH 42 4 HOH HOH 243 A HOH 43 4 HOH HOH 244 A HOH 45 4 HOH HOH 245 A HOH 46 4 HOH HOH 246 A HOH 48 4 HOH HOH 247 A HOH 49 4 HOH HOH 248 A HOH 50 4 HOH HOH 249 A HOH 54 4 HOH HOH 250 A HOH 90 4 HOH HOH 251 A HOH 96 4 HOH HOH 252 A HOH 97 4 HOH HOH 253 A HOH 98 4 HOH HOH 254 A HOH 99 4 HOH HOH 255 A HOH 100 4 HOH HOH 256 A HOH 101 4 HOH HOH 257 A HOH 103 4 HOH HOH 258 A HOH 107 4 HOH HOH 259 A HOH 110 4 HOH HOH 260 A HOH 113 4 HOH HOH 261 A HOH 120 4 HOH HOH 262 A HOH 15 4 HOH HOH 263 A HOH 6 4 HOH HOH 514 B HOH 8 4 HOH HOH 515 B HOH 11 4 HOH HOH 516 B HOH 17 4 HOH HOH 517 B HOH 18 4 HOH HOH 518 B HOH 19 4 HOH HOH 519 B HOH 20 4 HOH HOH 520 B HOH 21 4 HOH HOH 521 B HOH 29 4 HOH HOH 522 B HOH 30 4 HOH HOH 523 B HOH 31 4 HOH HOH 524 B HOH 32 4 HOH HOH 525 B HOH 44 4 HOH HOH 526 B HOH 47 4 HOH HOH 527 B HOH 51 4 HOH HOH 528 B HOH 52 4 HOH HOH 529 B HOH 53 4 HOH HOH 530 B HOH 55 4 HOH HOH 531 B HOH 56 4 HOH HOH 532 B HOH 57 4 HOH HOH 533 B HOH 58 4 HOH HOH 534 B HOH 59 4 HOH HOH 535 B HOH 60 4 HOH HOH 536 B HOH 61 4 HOH HOH 537 B HOH 62 4 HOH HOH 538 B HOH 63 4 HOH HOH 539 B HOH 64 4 HOH HOH 540 B HOH 65 4 HOH HOH 541 B HOH 66 4 HOH HOH 542 B HOH 67 4 HOH HOH 543 B HOH 68 4 HOH HOH 544 B HOH 69 4 HOH HOH 545 B HOH 70 4 HOH HOH 546 B HOH 71 4 HOH HOH 547 B HOH 72 4 HOH HOH 548 B HOH 73 4 HOH HOH 549 B HOH 74 4 HOH HOH 550 B HOH 75 4 HOH HOH 551 B HOH 76 4 HOH HOH 552 B HOH 77 4 HOH HOH 553 B HOH 78 4 HOH HOH 554 B HOH 79 4 HOH HOH 555 B HOH 80 4 HOH HOH 556 B HOH 81 4 HOH HOH 557 B HOH 82 4 HOH HOH 558 B HOH 83 4 HOH HOH 559 B HOH 84 4 HOH HOH 560 B HOH 85 4 HOH HOH 561 B HOH 86 4 HOH HOH 562 B HOH 87 4 HOH HOH 563 B HOH 88 4 HOH HOH 564 B HOH 89 4 HOH HOH 565 B HOH 91 4 HOH HOH 566 B HOH 92 4 HOH HOH 567 B HOH 93 4 HOH HOH 568 B HOH 94 4 HOH HOH 569 B HOH 95 4 HOH HOH 570 B HOH 102 4 HOH HOH 571 B HOH 104 4 HOH HOH 572 B HOH 105 4 HOH HOH 573 B HOH 106 4 HOH HOH 574 B HOH 108 4 HOH HOH 575 B HOH 109 4 HOH HOH 576 B HOH 112 4 HOH HOH 577 B HOH 114 4 HOH HOH 578 B HOH 115 4 HOH HOH 579 B ASP 1 n 1 ASP 1 A ILE 2 n 2 ILE 2 A GLU 3 n 3 GLU 3 A LEU 4 n 4 LEU 4 A THR 5 n 5 THR 5 A GLN 6 n 6 GLN 6 A SER 7 n 7 SER 7 A PRO 8 n 8 PRO 8 A SER 9 n 9 SER 9 A SER 10 n 10 SER 10 A MET 11 n 11 MET 11 A SER 12 n 12 SER 12 A VAL 13 n 13 VAL 13 A SER 14 n 14 SER 14 A LEU 15 n 15 LEU 15 A GLY 16 n 16 GLY 16 A ASP 17 n 17 ASP 17 A THR 18 n 18 THR 18 A VAL 19 n 19 VAL 19 A SER 20 n 20 SER 20 A ILE 21 n 21 ILE 21 A THR 22 n 22 THR 22 A CYS 23 n 23 CYS 23 A HIS 24 n 24 HIS 24 A ALA 25 n 25 ALA 25 A SER 26 n 26 SER 26 A GLN 27 n 27 GLN 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A SER 30 n 30 SER 30 A SER 31 n 31 SER 31 A ASN 32 n 32 ASN 32 A ILE 33 n 33 ILE 33 A GLY 34 n 34 GLY 34 A TRP 35 n 35 TRP 35 A LEU 36 n 36 L LEU 36 A GLN 37 n 37 GLN 37 A GLN 38 n 38 GLN 38 A LYS 39 n 39 LYS 39 A PRO 40 n 40 PRO 40 A GLY 41 n 41 GLY 41 A LYS 42 n 42 LYS 42 A SER 43 n 43 SER 43 A PHE 44 n 44 PHE 44 A LYS 45 n 45 LYS 45 A GLY 46 n 46 GLY 46 A LEU 47 n 47 LEU 47 A ILE 48 n 48 ILE 48 A TYR 49 n 49 TYR 49 A HIS 50 n 50 HIS 50 A GLY 51 n 51 GLY 51 A THR 52 n 52 THR 52 A ASN 53 n 53 ASN 53 A LEU 54 n 54 LEU 54 A GLU 55 n 55 L GLU 55 A ASP 56 n 56 ASP 56 A GLY 57 n 57 GLY 57 A VAL 58 n 58 VAL 58 A PRO 59 n 59 PRO 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A SER 63 n 63 SER 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A GLY 66 n 66 GLY 66 A SER 67 n 67 SER 67 A GLY 68 n 68 GLY 68 A ALA 69 n 69 ALA 69 A ASP 70 n 70 ASP 70 A TYR 71 n 71 TYR 71 A SER 72 n 72 SER 72 A LEU 73 n 73 LEU 73 A THR 74 n 74 THR 74 A ILE 75 n 75 ILE 75 A SER 76 n 76 SER 76 A SER 77 n 77 SER 77 A LEU 78 n 78 LEU 78 A GLU 79 n 79 GLU 79 A SER 80 n 80 SER 80 A GLU 81 n 81 GLU 81 A ASP 82 n 82 ASP 82 A PHE 83 n 83 PHE 83 A ALA 84 n 84 ALA 84 A ASP 85 n 85 ASP 85 A TYR 86 n 86 TYR 86 A TYR 87 n 87 TYR 87 A CYS 88 n 88 CYS 88 A VAL 89 n 89 VAL 89 A GLN 90 n 90 GLN 90 A TYR 91 n 91 L TYR 91 A VAL 92 n 92 VAL 92 A GLN 93 n 93 GLN 93 A PHE 94 n 94 PHE 94 A PRO 95 n 95 PRO 95 A PHE 96 n 96 L PHE 96 A THR 97 n 97 THR 97 A PHE 98 n 98 L PHE 98 A GLY 99 n 99 GLY 99 A SER 100 n 100 SER 100 A GLY 101 n 101 GLY 101 A THR 102 n 102 THR 102 A LYS 103 n 103 LYS 103 A LEU 104 n 104 LEU 104 A GLU 105 n 105 GLU 105 A ILE 106 n 106 ILE 106 A LYS 107 n 107 LYS 107 A ARG 108 n 108 ARG 108 A ALA 109 n 109 ALA 109 A ASP 110 n 110 ASP 110 A ALA 111 n 111 ALA 111 A ALA 112 n 112 ALA 112 A PRO 113 n 113 PRO 113 A THR 114 n 114 THR 114 A VAL 115 n 115 VAL 115 A SER 116 n 116 SER 116 A ILE 117 n 117 ILE 117 A PHE 118 n 118 PHE 118 A PRO 119 n 119 PRO 119 A PRO 120 n 120 PRO 120 A SER 121 n 121 SER 121 A SER 122 n 122 SER 122 A GLU 123 n 123 GLU 123 A GLN 124 n 124 GLN 124 A LEU 125 n 125 LEU 125 A THR 126 n 126 THR 126 A SER 127 n 127 SER 127 A GLY 128 n 128 GLY 128 A GLY 129 n 129 GLY 129 A ALA 130 n 130 ALA 130 A SER 131 n 131 SER 131 A VAL 132 n 132 VAL 132 A VAL 133 n 133 VAL 133 A CYS 134 n 134 CYS 134 A PHE 135 n 135 PHE 135 A LEU 136 n 136 LEU 136 A ASN 137 n 137 ASN 137 A ASN 138 n 138 ASN 138 A PHE 139 n 139 PHE 139 A TYR 140 n 140 TYR 140 A PRO 141 n 141 PRO 141 A LYS 142 n 142 LYS 142 A ASP 143 n 143 ASP 143 A ILE 144 n 144 ILE 144 A ASN 145 n 145 ASN 145 A VAL 146 n 146 VAL 146 A LYS 147 n 147 LYS 147 A TRP 148 n 148 TRP 148 A LYS 149 n 149 LYS 149 A ILE 150 n 150 ILE 150 A ASP 151 n 151 ASP 151 A GLY 152 n 152 GLY 152 A SER 153 n 153 SER 153 A GLU 154 n 154 GLU 154 A ARG 155 n 155 ARG 155 A GLN 156 n 156 GLN 156 A ASN 157 n 157 ASN 157 A GLY 158 n 158 GLY 158 A VAL 159 n 159 VAL 159 A LEU 160 n 160 LEU 160 A ASN 161 n 161 ASN 161 A SER 162 n 162 SER 162 A TRP 163 n 163 TRP 163 A THR 164 n 164 THR 164 A ASP 165 n 165 ASP 165 A GLN 166 n 166 GLN 166 A ASP 167 n 167 ASP 167 A SER 168 n 168 SER 168 A LYS 169 n 169 LYS 169 A ASP 170 n 170 ASP 170 A SER 171 n 171 SER 171 A THR 172 n 172 THR 172 A TYR 173 n 173 TYR 173 A SER 174 n 174 SER 174 A MET 175 n 175 MET 175 A SER 176 n 176 SER 176 A SER 177 n 177 SER 177 A THR 178 n 178 THR 178 A LEU 179 n 179 LEU 179 A THR 180 n 180 THR 180 A LEU 181 n 181 LEU 181 A THR 182 n 182 THR 182 A LYS 183 n 183 LYS 183 A ASP 184 n 184 ASP 184 A GLU 185 n 185 GLU 185 A TYR 186 n 186 TYR 186 A GLU 187 n 187 GLU 187 A ARG 188 n 188 ARG 188 A HIS 189 n 189 HIS 189 A ASN 190 n 190 ASN 190 A SER 191 n 191 SER 191 A TYR 192 n 192 TYR 192 A THR 193 n 193 THR 193 A CYS 194 n 194 CYS 194 A GLU 195 n 195 GLU 195 A ALA 196 n 196 ALA 196 A THR 197 n 197 THR 197 A HIS 198 n 198 HIS 198 A LYS 199 n 199 LYS 199 A THR 200 n 200 THR 200 A SER 201 n 201 SER 201 A THR 202 n 202 THR 202 A SER 203 n 203 SER 203 A PRO 204 n 204 PRO 204 A ILE 205 n 205 ILE 205 A VAL 206 n 206 VAL 206 A LYS 207 n 207 LYS 207 A SER 208 n 208 SER 208 A PHE 209 n 209 PHE 209 A ASN 210 n 210 ASN 210 A ARG 211 n 211 ARG 211 A ASN 212 n 212 ASN 212 A GLU 213 n 213 GLU 213 A ALA 214 n 214 ALA 214 A GLN 301 n 1 GLN 301 B VAL 302 n 2 VAL 302 B GLN 303 n 3 GLN 303 B LEU 304 n 4 LEU 304 B GLN 305 n 5 GLN 305 B GLU 306 n 6 GLU 306 B SER 307 n 7 SER 307 B GLY 308 n 8 GLY 308 B PRO 309 n 9 PRO 309 B GLY 310 n 10 GLY 310 B LEU 311 n 11 LEU 311 B VAL 312 n 12 VAL 312 B LYS 313 n 13 LYS 313 B PRO 314 n 14 PRO 314 B SER 315 n 15 SER 315 B GLN 316 n 16 GLN 316 B SER 317 n 17 SER 317 B LEU 318 n 18 LEU 318 B SER 319 n 19 SER 319 B LEU 320 n 20 LEU 320 B THR 321 n 21 THR 321 B CYS 322 n 22 CYS 322 B THR 323 n 23 THR 323 B VAL 324 n 24 VAL 324 B THR 325 n 25 THR 325 B GLY 326 n 26 GLY 326 B TYR 327 n 27 TYR 327 B SER 328 n 28 SER 328 B ILE 329 n 29 ILE 329 B THR 330 n 30 THR 330 B SER 331 n 31 X SER 331 B ASP 331 n 32 ASP 331 B TYR 332 n 33 TYR 332 B ALA 33 n 34 H ALA 33 B TRP 334 n 35 TRP 334 B ASN 35 n 36 H ASN 35 B TRP 336 n 37 TRP 336 B ILE 337 n 38 ILE 337 B ARG 338 n 39 ARG 338 B GLN 339 n 40 GLN 339 B PHE 340 n 41 PHE 340 B PRO 341 n 42 PRO 341 B GLY 342 n 43 GLY 342 B ASN 343 n 44 ASN 343 B LYS 344 n 45 LYS 344 B LEU 345 n 46 LEU 345 B GLU 346 n 47 GLU 346 B TRP 47 n 48 H TRP 47 B MET 348 n 49 MET 348 B GLY 349 n 50 GLY 349 B TYR 50 n 51 H TYR 50 B ILE 351 n 52 ILE 351 B SER 352 n 53 SER 352 B TYR 353 n 54 TYR 353 B SER 354 n 55 SER 354 B GLY 355 n 56 GLY 355 B SER 356 n 57 SER 356 B THR 357 n 58 THR 357 B SER 358 n 59 SER 358 B TYR 359 n 60 TYR 359 B SER 360 n 61 SER 360 B PRO 361 n 62 PRO 361 B SER 362 n 63 SER 362 B LEU 363 n 64 LEU 363 B LYS 364 n 65 LYS 364 B SER 365 n 66 SER 365 B ARG 366 n 67 ARG 366 B ILE 367 n 68 ILE 367 B SER 368 n 69 SER 368 B LEU 369 n 70 LEU 369 B THR 370 n 71 THR 370 B ARG 371 n 72 ARG 371 B ASP 372 n 73 ASP 372 B THR 373 n 74 THR 373 B SER 374 n 75 SER 374 B LYS 375 n 76 LYS 375 B ASN 376 n 77 ASN 376 B GLN 377 n 78 GLN 377 B PHE 378 n 79 PHE 378 B PHE 379 n 80 PHE 379 B LEU 380 n 81 LEU 380 B GLN 381 n 82 GLN 381 B LEU 382 n 83 LEU 382 B ASN 382 n 84 A ASN 382 B SER 382 n 85 B SER 382 B VAL 382 n 86 C VAL 382 B THR 383 n 87 THR 383 B THR 384 n 88 THR 384 B GLU 385 n 89 GLU 385 B ASP 386 n 90 ASP 386 B THR 387 n 91 THR 387 B ALA 388 n 92 ALA 388 B THR 389 n 93 THR 389 B TYR 390 n 94 TYR 390 B TYR 391 n 95 TYR 391 B CYS 392 n 96 CYS 392 B VAL 393 n 97 VAL 393 B THR 394 n 98 THR 394 B SER 95 n 99 H SER 95 B LEU 96 n 100 H LEU 96 B THR 397 n 101 THR 397 B TRP 398 n 102 TRP 398 B LEU 399 n 103 LEU 399 B LEU 400 n 104 LEU 400 B ARG 400 n 105 A ARG 400 B ARG 400 n 106 B ARG 400 B LYS 400 n 107 C LYS 400 B ARG 400 n 108 D ARG 400 B SER 401 n 109 SER 401 B TYR 402 n 110 TYR 402 B TRP 103 n 111 H TRP 103 B GLY 404 n 112 GLY 404 B GLN 405 n 113 GLN 405 B GLY 406 n 114 GLY 406 B THR 407 n 115 THR 407 B THR 408 n 116 THR 408 B VAL 409 n 117 VAL 409 B THR 410 n 118 THR 410 B VAL 411 n 119 VAL 411 B SER 412 n 120 SER 412 B SER 413 n 121 SER 413 B ALA 414 n 122 ALA 414 B SER 415 n 123 SER 415 B THR 416 n 124 THR 416 B LYS 417 n 125 LYS 417 B GLY 418 n 126 GLY 418 B PRO 419 n 127 PRO 419 B SER 420 n 128 SER 420 B VAL 421 n 129 VAL 421 B TYR 422 n 130 TYR 422 B PRO 423 n 131 PRO 423 B LEU 424 n 132 LEU 424 B ALA 425 n 133 ALA 425 B PRO 426 n 134 PRO 426 B GLY 427 n 135 GLY 427 B SER 428 n 136 SER 428 B LYS 429 n 137 LYS 429 B ALA 430 n 138 ALA 430 B ALA 432 n 139 ALA 432 B ALA 433 n 140 ALA 433 B SER 434 n 141 SER 434 B MET 435 n 142 MET 435 B VAL 436 n 143 VAL 436 B THR 437 n 144 THR 437 B LEU 438 n 145 LEU 438 B GLY 439 n 146 GLY 439 B CYS 440 n 147 CYS 440 B LEU 441 n 148 LEU 441 B VAL 442 n 149 VAL 442 B LYS 443 n 150 LYS 443 B GLY 444 n 151 GLY 444 B TYR 445 n 152 TYR 445 B PHE 446 n 153 PHE 446 B PRO 447 n 154 PRO 447 B GLU 448 n 155 GLU 448 B PRO 449 n 156 PRO 449 B VAL 450 n 157 VAL 450 B THR 451 n 158 THR 451 B VAL 452 n 159 VAL 452 B THR 453 n 160 THR 453 B TRP 454 n 161 TRP 454 B ASN 455 n 162 ASN 455 B SER 456 n 163 SER 456 B GLY 457 n 164 GLY 457 B SER 458 n 165 SER 458 B LEU 459 n 166 LEU 459 B SER 460 n 167 SER 460 B SER 461 n 168 SER 461 B GLY 462 n 169 GLY 462 B VAL 463 n 170 VAL 463 B HIS 464 n 171 HIS 464 B THR 465 n 172 THR 465 B PHE 466 n 173 PHE 466 B PRO 467 n 174 PRO 467 B ALA 468 n 175 ALA 468 B VAL 469 n 176 VAL 469 B LEU 470 n 177 LEU 470 B GLN 471 n 178 GLN 471 B SER 472 n 179 SER 472 B ASP 473 n 180 ASP 473 B LEU 474 n 181 LEU 474 B TYR 475 n 182 TYR 475 B THR 476 n 183 THR 476 B LEU 477 n 184 LEU 477 B SER 478 n 185 SER 478 B SER 479 n 186 SER 479 B SER 480 n 187 SER 480 B VAL 481 n 188 VAL 481 B THR 482 n 189 THR 482 B VAL 483 n 190 VAL 483 B PRO 484 n 191 PRO 484 B SER 485 n 192 SER 485 B SER 486 n 193 SER 486 B PRO 487 n 194 PRO 487 B ARG 488 n 195 ARG 488 B PRO 489 n 196 PRO 489 B SER 490 n 197 SER 490 B GLU 491 n 198 GLU 491 B THR 492 n 199 THR 492 B VAL 493 n 200 VAL 493 B THR 494 n 201 THR 494 B CYS 495 n 202 CYS 495 B ASN 496 n 203 ASN 496 B VAL 497 n 204 VAL 497 B ALA 498 n 205 ALA 498 B HIS 499 n 206 HIS 499 B PRO 500 n 207 PRO 500 B ALA 501 n 208 ALA 501 B SER 502 n 209 SER 502 B SER 503 n 210 SER 503 B THR 504 n 211 THR 504 B LYS 505 n 212 LYS 505 B VAL 506 n 213 VAL 506 B ASP 507 n 214 ASP 507 B LYS 508 n 215 LYS 508 B LYS 509 n 216 LYS 509 B ILE 510 n 217 ILE 510 B VAL 511 n 218 VAL 511 B PRO 512 n 219 PRO 512 B GLU 513 n 220 GLU 513 B author_and_software_defined_assembly PISA 2 dimeric 4630 -26 19410 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 7 A O SER 7 A N THR 22 A N THR 22 A O CYS 23 A O CYS 23 A N TYR 71 A N TYR 71 A N THR 74 A N THR 74 A O SER 63 A O SER 63 A O ASN 53 A O ASN 53 A N TYR 49 A N TYR 49 A N LEU 47 A N LEU 47 A O TRP 35 A O TRP 35 A N GLN 38 A N GLN 38 A O ASP 85 A O ASP 85 A N GLN 90 A N GLN 90 A O THR 97 A O THR 97 A O ASN 53 A O ASN 53 A N TYR 49 A N TYR 49 A N LEU 47 A N LEU 47 A O TRP 35 A O TRP 35 A N GLN 38 A N GLN 38 A O ASP 85 A O ASP 85 A N TYR 86 A N TYR 86 A O THR 102 A O THR 102 A N GLU 105 A N GLU 105 A O MET 11 A O MET 11 A N PHE 118 A N PHE 118 A O VAL 133 A O VAL 133 A N PHE 139 A N PHE 139 A O TYR 173 A O TYR 173 A O THR 178 A O THR 178 A N LEU 160 A N LEU 160 A N ARG 155 A N ARG 155 A O TRP 148 A O TRP 148 A O LYS 149 A O LYS 149 A N THR 193 A N THR 193 A N ALA 196 A N ALA 196 A O ILE 205 A O ILE 205 B O SER 307 B O SER 7 B N THR 321 B N THR 21 B N CYS 322 B N CYS 22 B O PHE 378 B O PHE 79 B N GLN 381 B N GLN 82 B O SER 368 B O SER 69 B N VAL 312 B N VAL 12 B O THR 410 B O THR 118 B N VAL 409 B N VAL 117 B O ALA 388 B O ALA 92 B O VAL 393 B O VAL 97 H B N ASN 35 B N ASN 36 B O ARG 338 B O ARG 39 B N GLU 346 B N GLU 47 H B N TYR 50 B N TYR 51 B O SER 358 B O SER 59 B N LEU 424 B N LEU 132 B O GLY 439 B O GLY 146 B O TYR 445 B O TYR 152 B N TYR 475 B N TYR 182 B O SER 480 B O SER 187 B N HIS 464 B N HIS 171 B N LEU 424 B N LEU 132 B O GLY 439 B O GLY 146 B O TYR 445 B O TYR 152 B N TYR 475 B N TYR 182 B O THR 476 B O THR 183 B N VAL 469 B N VAL 176 B O THR 453 B O THR 160 B N ASN 496 B N ASN 203 B O HIS 499 B O HIS 206 B N THR 504 B N THR 211 1 B B CB N ASN SER 455 456 1.63 1 B B C N ALA ALA 430 432 4.39 1 B B C N ASN SER 455 456 4.23 1 15.26 2.40 120.20 135.46 A A A CA C O PRO PRO PRO 40 40 40 N 1 -13.89 2.00 116.20 102.31 A A A CA C N PRO PRO GLY 40 40 41 Y 1 -15.20 2.10 122.30 107.10 A A A C N CA PRO GLY GLY 40 41 41 Y 1 15.14 2.50 121.70 136.84 A A A C N CA GLY LYS LYS 41 42 42 Y 1 24.76 2.70 111.00 135.76 A A A N CA C LYS LYS LYS 42 42 42 N 1 22.63 2.10 120.10 142.73 B B B CA C O ALA ALA ALA 430 430 430 N 1 20.47 2.00 110.40 130.87 B B B CB CA C ASN ASN ASN 455 455 455 N 1 17.23 1.80 110.60 127.83 B B B N CA CB ASN ASN ASN 455 455 455 N 1 -72.38 2.20 113.40 41.02 B B B CA CB CG ASN ASN ASN 455 455 455 N 1 -25.26 2.70 111.00 85.74 B B B N CA C ASN ASN ASN 455 455 455 N 1 -95.32 2.10 120.10 24.78 B B B CA C O ASN ASN ASN 455 455 455 N 1 31.54 1.50 110.50 142.04 B B B N CA CB SER SER SER 456 456 456 N 1 -28.57 2.70 111.00 82.43 B B B N CA C SER SER SER 456 456 456 N 1 -18.82 2.20 117.20 98.38 B B B CA C N GLY GLY SER 457 457 458 Y 1 16.36 1.60 122.70 139.05 B B B O C N GLY GLY SER 457 457 458 Y 1 -11.48 1.50 110.50 99.02 B B B N CA CB SER SER SER 458 458 458 N 1 B B CA C ALA ALA 430 430 0.241 0.026 1.525 1.766 N 1 B B C O ALA ALA 430 430 -0.416 0.019 1.229 0.813 N 1 B B CA CB ASN ASN 455 455 0.180 0.026 1.527 1.707 N 1 B B CB CG ASN ASN 455 455 2.460 0.023 1.506 3.966 N 1 B B CA C ASN ASN 455 455 0.266 0.026 1.525 1.791 N 1 B B C O ASN ASN 455 455 2.488 0.019 1.229 3.717 N 1 B B CA CB SER SER 456 456 -0.238 0.015 1.525 1.287 N 1 B B N CA GLY GLY 457 457 -0.091 0.015 1.456 1.365 N 1 B B N CA SER SER 458 458 0.177 0.020 1.459 1.636 N 1 B B CA CB SER SER 458 458 0.104 0.015 1.525 1.629 N 1 B B CA C SER SER 458 458 -0.164 0.026 1.525 1.361 N 1 A SER 26 -68.57 11.18 1 A LYS 42 -29.88 -159.93 1 A LEU 47 -96.17 -62.34 1 A SER 77 59.37 84.11 1 A ALA 84 -158.84 -155.59 1 A ASN 138 52.46 72.17 1 A LYS 169 -90.39 -65.30 1 B SER 315 86.60 -11.67 1 B ILE 329 -62.94 4.11 1 B TYR 332 54.16 159.92 1 B ASN 343 75.70 -3.03 B 1 B SER 382 39.33 56.71 1 B LEU 400 -87.85 -151.07 1 B SER 428 87.63 25.26 1 B ALA 433 -118.79 -163.09 1 B ALA 501 -46.13 -17.99 0.27 0.205 0.205 2.60 12.0 1575 15749 RANDOM 1 1.000 2.60 12.0 114 3459 23 0 3322 0.010 30.00 2.600 20.000 1C12 15749 1.000 0.13 1 12.0000 5.000 88.0 0.3 2.60 2.70 1.50 55.0 refinement X-PLOR ANTIBODY FRAGMENT FAB INSIGHT IN ODORANT PERCEPTION: THE CRYSTAL STRUCTURE AND BINDING CHARACTERISTICS OF ANTIBODY FRAGMENTS DIRECTED AGAINST THE MUSK ODORANT TRASEOLIDE 1 N N 2 N N 3 N N 4 N N 4 N N The biological assembly is a Fab monomer A GLU 79 A GLU 79 HELX_P A PHE 83 A PHE 83 5 1 5 A SER 121 A SER 121 HELX_P A GLY 128 A GLY 128 1 2 8 A LYS 183 A LYS 183 HELX_P A GLU 187 A GLU 187 1 3 5 B PRO 361 B PRO 62 HELX_P B LYS 364 B LYS 65 5 4 4 B THR 383 B THR 87 HELX_P B THR 387 B THR 91 5 5 5 B SER 456 B SER 163 HELX_P B SER 458 B SER 165 5 6 3 B SER 486 B SER 193 HELX_P B GLU 491 B GLU 198 1 7 6 B PRO 500 B PRO 207 HELX_P B SER 503 B SER 210 5 8 4 disulf 2.026 A CYS 23 A SG CYS 23 1_555 A CYS 88 A SG CYS 88 1_555 disulf 2.027 A CYS 134 A SG CYS 134 1_555 A CYS 194 A SG CYS 194 1_555 disulf 2.027 B CYS 322 B SG CYS 22 1_555 B CYS 392 B SG CYS 96 1_555 disulf 2.021 B CYS 440 B SG CYS 147 1_555 B CYS 495 B SG CYS 202 1_555 IMMUNE SYSTEM ANTIBODY-ANTIGEN COMPLEX, SCFV FRAGMENT, CDRH3, MUSK ODORANT, ODORANT SPECIFICITY, IMMUNE SYSTEM A SER 7 A SER 7 1 A PRO 8 A PRO 8 -0.50 A PHE 94 A PHE 94 1 A PRO 95 A PRO 95 2.30 A TYR 140 A TYR 140 1 A PRO 141 A PRO 141 -0.20 B PHE 446 B PHE 153 1 B PRO 447 B PRO 154 1.49 B GLU 448 B GLU 155 1 B PRO 449 B PRO 156 -8.37 B ARG 488 B ARG 195 1 B PRO 489 B PRO 196 4.72 1C12 PDB 1 1C12 1C12 PDB 2 1C12 1 214 1C12 1 214 1C12 A 1 1 214 301 513 1C12 301 513 1C12 B 2 1 220 4 5 6 4 4 4 6 4 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 4 A LEU 4 A SER 7 A SER 7 A VAL 19 A VAL 19 A ALA 25 A ALA 25 A ASP 70 A ASP 70 A ILE 75 A ILE 75 A PHE 62 A PHE 62 A SER 67 A SER 67 A ASN 53 A ASN 53 A LEU 54 A LEU 54 A PHE 44 A PHE 44 A TYR 49 A TYR 49 A ILE 33 A ILE 33 A GLN 38 A GLN 38 A ASP 85 A ASP 85 A GLN 90 A GLN 90 A THR 97 A THR 97 A PHE 98 A PHE 98 L A ASN 53 A ASN 53 A LEU 54 A LEU 54 A PHE 44 A PHE 44 A TYR 49 A TYR 49 A ILE 33 A ILE 33 A GLN 38 A GLN 38 A ASP 85 A ASP 85 A GLN 90 A GLN 90 A THR 102 A THR 102 A ILE 106 A ILE 106 A SER 10 A SER 10 A VAL 13 A VAL 13 A THR 114 A THR 114 A PHE 118 A PHE 118 A GLY 129 A GLY 129 A PHE 139 A PHE 139 A TYR 173 A TYR 173 A THR 182 A THR 182 A VAL 159 A VAL 159 A TRP 163 A TRP 163 A SER 153 A SER 153 A ARG 155 A ARG 155 A ASN 145 A ASN 145 A ILE 150 A ILE 150 A SER 191 A SER 191 A THR 197 A THR 197 A ILE 205 A ILE 205 A ASN 210 A ASN 210 B GLN 303 B GLN 3 B SER 307 B SER 7 B LEU 318 B LEU 18 B THR 325 B THR 25 B GLN 377 B GLN 78 B LEU 382 B LEU 83 B ILE 367 B ILE 68 B ASP 372 B ASP 73 B LEU 311 B LEU 11 B VAL 312 B VAL 12 B THR 407 B THR 115 B VAL 411 B VAL 119 B ALA 388 B ALA 92 B THR 394 B THR 98 B TRP 334 B TRP 35 B GLN 339 B GLN 40 B LEU 345 B LEU 46 B ILE 351 B ILE 52 B THR 357 B THR 58 B TYR 359 B TYR 60 B SER 420 B SER 128 B LEU 424 B LEU 132 B MET 435 B MET 142 B TYR 445 B TYR 152 B LEU 474 B LEU 181 B PRO 484 B PRO 191 B VAL 463 B VAL 170 B THR 465 B THR 172 B SER 420 B SER 128 B LEU 424 B LEU 132 B MET 435 B MET 142 B TYR 445 B TYR 152 B LEU 474 B LEU 181 B PRO 484 B PRO 191 B VAL 469 B VAL 176 B GLN 471 B GLN 178 B THR 451 B THR 158 B TRP 454 B TRP 161 B THR 494 B THR 201 B HIS 499 B HIS 206 B THR 504 B THR 211 B LYS 509 B LYS 216 BINDING SITE FOR RESIDUE TRZ A 215 Software 8 A TYR 91 A TYR 91 L 8 1_555 A PHE 96 A PHE 96 L 8 1_555 A HOH 243 D HOH 8 1_555 A HOH 262 D HOH 8 1_555 B ASN 35 B ASN 36 H 8 1_555 B TRP 47 B TRP 48 H 8 1_555 B LEU 96 B LEU 100 H 8 1_555 B VAL 393 B VAL 97 8 1_555 18 P 2 21 21