0.015097 0.000000 0.003143 0.000000 0.021580 0.000000 0.000000 0.000000 0.010831 0.00000 0.00000 0.00000 Yang, Z.-N. Mueser, T.C. Bushman, F.D. Hyde, C.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 101.76 90.00 66.240 46.339 94.309 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 296 535 548 10.1006/jmbi.1999.3463 10669607 Crystal structure of an active two-domain derivative of Rous sarcoma virus integrase. 2000 10.2210/pdb1c1a/pdb pdb_00001c1a 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95.0 1 CCD 1998-11-17 ADSC QUANTUM 4 MULTIPLE WAVELENGTH M x-ray 1 0.9791 1.0 X9B NSLS 0.9791 SYNCHROTRON NSLS BEAMLINE X9B 26599.531 RSV INTEGRASE 2.7.7.49 RESIDUES 49-286 F199K 2 man polymer no no GVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTS KSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTP IQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFA GVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTS KSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTP IQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Alpharetrovirus Escherichia sample 11886 Rous sarcoma virus 562 Escherichia coli 1 2.66 41.7 THE CATALYTIC DOMAIN WAS POSITIONED BY MOLECULAR REPLACEMENT USING AMORE WITH 1VSE AS STARTING MODEL. MAD PHASED MAP WAS CACULATED USING THE SAME ORIGIN AS THE MOLECULAR REPLACEMENT SOLUTION AND SE POSITIONS WERE CONFIRMED. THE SH3- FOLD OF C-DOMAIN WAS LOCATED VISUALLY IN THE MAD MAP, HIV C-DOMAIN (1IHV) MONOMER WAS POSITIONED MANUALLY IN THE MAP AND MODIFIED TO RSV SEQUENCES DURING MODEL BUILDING. ROD-SHAPED CRYSTALS WERE GROWN BY SITTING DROP VAPOR DIFFUSION METHOD. RESERVOIR SOLUTION CONTAINED 0.050M KCL, 0.01M MGCL2, 0.1M SODIUM CACODYLATE, 0.02M IMIDAZOLE, PH 7.2, 10% PEG3350, AND 20% (V/V) ETHYLENE GLYCOL. THE DROP CONTAINED 1:1 MIXTURE OF RESERVOIR SOLUTION AND PROTEIN (10-15 MG/ML) database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Other Database references Data collection Refinement description 1 0 2000-03-01 1 1 2008-04-27 1 2 2011-07-13 1 3 2012-02-29 1 4 2021-11-03 1 5 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details 1c0m is in P1 space group, 2.53 A RCSB Y RCSB 1999-07-21 REL REL 1VSE ASV INTEGRASE CATALYTIC DOMAIN (1VSE) PDB experimental model n 1 49 A n 2 50 A n 3 51 A PRO 52 n 4 PRO 52 A ARG 53 n 5 ARG 53 A GLY 54 n 6 GLY 54 A LEU 55 n 7 LEU 55 A GLY 56 n 8 GLY 56 A PRO 57 n 9 PRO 57 A LEU 58 n 10 LEU 58 A GLN 59 n 11 GLN 59 A ILE 60 n 12 ILE 60 A TRP 61 n 13 TRP 61 A GLN 62 n 14 GLN 62 A THR 63 n 15 THR 63 A ASP 64 n 16 ASP 64 A PHE 65 n 17 PHE 65 A THR 66 n 18 THR 66 A LEU 67 n 19 LEU 67 A GLU 68 n 20 GLU 68 A PRO 69 n 21 PRO 69 A ARG 70 n 22 ARG 70 A MET 71 n 23 MET 71 A ALA 72 n 24 ALA 72 A PRO 73 n 25 PRO 73 A ARG 74 n 26 ARG 74 A SER 75 n 27 SER 75 A TRP 76 n 28 TRP 76 A LEU 77 n 29 LEU 77 A ALA 78 n 30 ALA 78 A VAL 79 n 31 VAL 79 A THR 80 n 32 THR 80 A VAL 81 n 33 VAL 81 A ASP 82 n 34 ASP 82 A THR 83 n 35 THR 83 A ALA 84 n 36 ALA 84 A SER 85 n 37 SER 85 A SER 86 n 38 SER 86 A ALA 87 n 39 ALA 87 A ILE 88 n 40 ILE 88 A VAL 89 n 41 VAL 89 A VAL 90 n 42 VAL 90 A THR 91 n 43 THR 91 A GLN 92 n 44 GLN 92 A HIS 93 n 45 HIS 93 A GLY 94 n 46 GLY 94 A ARG 95 n 47 ARG 95 A VAL 96 n 48 VAL 96 A THR 97 n 49 THR 97 A SER 98 n 50 SER 98 A VAL 99 n 51 VAL 99 A ALA 100 n 52 ALA 100 A VAL 101 n 53 VAL 101 A GLN 102 n 54 GLN 102 A HIS 103 n 55 HIS 103 A HIS 104 n 56 HIS 104 A TRP 105 n 57 TRP 105 A ALA 106 n 58 ALA 106 A THR 107 n 59 THR 107 A ALA 108 n 60 ALA 108 A ILE 109 n 61 ILE 109 A ALA 110 n 62 ALA 110 A VAL 111 n 63 VAL 111 A LEU 112 n 64 LEU 112 A GLY 113 n 65 GLY 113 A ARG 114 n 66 ARG 114 A PRO 115 n 67 PRO 115 A LYS 116 n 68 LYS 116 A ALA 117 n 69 ALA 117 A ILE 118 n 70 ILE 118 A LYS 119 n 71 LYS 119 A THR 120 n 72 THR 120 A ASP 121 n 73 ASP 121 A ASN 122 n 74 ASN 122 A GLY 123 n 75 GLY 123 A SER 124 n 76 SER 124 A CYS 125 n 77 CYS 125 A PHE 126 n 78 PHE 126 A THR 127 n 79 THR 127 A SER 128 n 80 SER 128 A LYS 129 n 81 LYS 129 A SER 130 n 82 SER 130 A THR 131 n 83 THR 131 A ARG 132 n 84 ARG 132 A GLU 133 n 85 GLU 133 A TRP 134 n 86 TRP 134 A LEU 135 n 87 LEU 135 A ALA 136 n 88 ALA 136 A ARG 137 n 89 ARG 137 A TRP 138 n 90 TRP 138 A GLY 139 n 91 GLY 139 A ILE 140 n 92 ILE 140 A ALA 141 n 93 ALA 141 A HIS 142 n 94 HIS 142 A THR 143 n 95 THR 143 A THR 144 n 96 THR 144 A GLY 145 n 97 GLY 145 A ILE 146 n 98 ILE 146 A PRO 147 n 99 PRO 147 A GLY 148 n 100 GLY 148 A ASN 149 n 101 ASN 149 A SER 150 n 102 SER 150 A GLN 151 n 103 GLN 151 A GLY 152 n 104 GLY 152 A GLN 153 n 105 GLN 153 A ALA 154 n 106 ALA 154 A MET 155 n 107 MET 155 A VAL 156 n 108 VAL 156 A GLU 157 n 109 GLU 157 A ARG 158 n 110 ARG 158 A ALA 159 n 111 ALA 159 A ASN 160 n 112 ASN 160 A ARG 161 n 113 ARG 161 A LEU 162 n 114 LEU 162 A LEU 163 n 115 LEU 163 A LYS 164 n 116 LYS 164 A ASP 165 n 117 ASP 165 A ARG 166 n 118 ARG 166 A ILE 167 n 119 ILE 167 A ARG 168 n 120 ARG 168 A VAL 169 n 121 VAL 169 A LEU 170 n 122 LEU 170 A ALA 171 n 123 ALA 171 A GLU 172 n 124 GLU 172 A GLY 173 n 125 GLY 173 A ASP 174 n 126 ASP 174 A GLY 175 n 127 GLY 175 A PHE 176 n 128 PHE 176 A MET 177 n 129 MET 177 A LYS 178 n 130 LYS 178 A ARG 179 n 131 ARG 179 A ILE 180 n 132 ILE 180 A PRO 181 n 133 PRO 181 A THR 182 n 134 THR 182 A SER 183 n 135 SER 183 A LYS 184 n 136 LYS 184 A GLN 185 n 137 GLN 185 A GLY 186 n 138 GLY 186 A GLU 187 n 139 GLU 187 A LEU 188 n 140 LEU 188 A LEU 189 n 141 LEU 189 A ALA 190 n 142 ALA 190 A LYS 191 n 143 LYS 191 A ALA 192 n 144 ALA 192 A MET 193 n 145 MET 193 A TYR 194 n 146 TYR 194 A ALA 195 n 147 ALA 195 A LEU 196 n 148 LEU 196 A ASN 197 n 149 ASN 197 A HIS 198 n 150 HIS 198 A LYS 199 n 151 LYS 199 A GLU 200 n 152 GLU 200 A ARG 201 n 153 ARG 201 A GLY 202 n 154 GLY 202 A GLU 203 n 155 GLU 203 A ASN 204 n 156 ASN 204 A THR 205 n 157 THR 205 A LYS 206 n 158 LYS 206 A THR 207 n 159 THR 207 A PRO 208 n 160 PRO 208 A ILE 209 n 161 ILE 209 A GLN 210 n 162 GLN 210 A LYS 211 n 163 LYS 211 A HIS 212 n 164 HIS 212 A TRP 213 n 165 TRP 213 A ARG 214 n 166 ARG 214 A PRO 215 n 167 PRO 215 A THR 216 n 168 THR 216 A VAL 217 n 169 VAL 217 A LEU 218 n 170 LEU 218 A THR 219 n 171 THR 219 A GLU 220 n 172 GLU 220 A GLY 221 n 173 GLY 221 A PRO 222 n 174 PRO 222 A PRO 223 n 175 PRO 223 A VAL 224 n 176 VAL 224 A LYS 225 n 177 LYS 225 A ILE 226 n 178 ILE 226 A ARG 227 n 179 ARG 227 A ILE 228 n 180 ILE 228 A GLU 229 n 181 GLU 229 A THR 230 n 182 THR 230 A GLY 231 n 183 GLY 231 A GLU 232 n 184 GLU 232 A TRP 233 n 185 TRP 233 A GLU 234 n 186 GLU 234 A LYS 235 n 187 LYS 235 A GLY 236 n 188 GLY 236 A TRP 237 n 189 TRP 237 A ASN 238 n 190 ASN 238 A VAL 239 n 191 VAL 239 A LEU 240 n 192 LEU 240 A VAL 241 n 193 VAL 241 A TRP 242 n 194 TRP 242 A GLY 243 n 195 GLY 243 A ARG 244 n 196 ARG 244 A GLY 245 n 197 GLY 245 A TYR 246 n 198 TYR 246 A ALA 247 n 199 ALA 247 A ALA 248 n 200 ALA 248 A VAL 249 n 201 VAL 249 A LYS 250 n 202 LYS 250 A ASN 251 n 203 ASN 251 A ARG 252 n 204 ARG 252 A ASP 253 n 205 ASP 253 A THR 254 n 206 THR 254 A ASP 255 n 207 ASP 255 A LYS 256 n 208 LYS 256 A VAL 257 n 209 VAL 257 A ILE 258 n 210 ILE 258 A TRP 259 n 211 TRP 259 A VAL 260 n 212 VAL 260 A PRO 261 n 213 PRO 261 A SER 262 n 214 SER 262 A ARG 263 n 215 ARG 263 A LYS 264 n 216 LYS 264 A VAL 265 n 217 VAL 265 A LYS 266 n 218 LYS 266 A PRO 267 n 219 PRO 267 A ASP 268 n 220 ASP 268 A ILE 269 n 221 ILE 269 A THR 270 n 222 THR 270 A GLN 271 n 223 GLN 271 A LYS 272 n 224 LYS 272 A n 225 273 A n 226 274 A n 227 275 A n 228 276 A n 229 277 A n 230 278 A n 231 279 A n 232 280 A n 233 281 A n 234 282 A n 235 283 A n 236 284 A n 237 285 A n 238 286 A n 1 49 B n 2 50 B n 3 51 B n 4 52 B n 5 53 B n 6 54 B LEU 55 n 7 LEU 55 B GLY 56 n 8 GLY 56 B PRO 57 n 9 PRO 57 B LEU 58 n 10 LEU 58 B GLN 59 n 11 GLN 59 B ILE 60 n 12 ILE 60 B TRP 61 n 13 TRP 61 B GLN 62 n 14 GLN 62 B THR 63 n 15 THR 63 B ASP 64 n 16 ASP 64 B PHE 65 n 17 PHE 65 B THR 66 n 18 THR 66 B LEU 67 n 19 LEU 67 B GLU 68 n 20 GLU 68 B PRO 69 n 21 PRO 69 B ARG 70 n 22 ARG 70 B MET 71 n 23 MET 71 B ALA 72 n 24 ALA 72 B PRO 73 n 25 PRO 73 B ARG 74 n 26 ARG 74 B SER 75 n 27 SER 75 B TRP 76 n 28 TRP 76 B LEU 77 n 29 LEU 77 B ALA 78 n 30 ALA 78 B VAL 79 n 31 VAL 79 B THR 80 n 32 THR 80 B VAL 81 n 33 VAL 81 B ASP 82 n 34 ASP 82 B THR 83 n 35 THR 83 B ALA 84 n 36 ALA 84 B SER 85 n 37 SER 85 B SER 86 n 38 SER 86 B ALA 87 n 39 ALA 87 B ILE 88 n 40 ILE 88 B VAL 89 n 41 VAL 89 B VAL 90 n 42 VAL 90 B THR 91 n 43 THR 91 B GLN 92 n 44 GLN 92 B HIS 93 n 45 HIS 93 B GLY 94 n 46 GLY 94 B ARG 95 n 47 ARG 95 B VAL 96 n 48 VAL 96 B THR 97 n 49 THR 97 B SER 98 n 50 SER 98 B VAL 99 n 51 VAL 99 B ALA 100 n 52 ALA 100 B VAL 101 n 53 VAL 101 B GLN 102 n 54 GLN 102 B HIS 103 n 55 HIS 103 B HIS 104 n 56 HIS 104 B TRP 105 n 57 TRP 105 B ALA 106 n 58 ALA 106 B THR 107 n 59 THR 107 B ALA 108 n 60 ALA 108 B ILE 109 n 61 ILE 109 B ALA 110 n 62 ALA 110 B VAL 111 n 63 VAL 111 B LEU 112 n 64 LEU 112 B GLY 113 n 65 GLY 113 B ARG 114 n 66 ARG 114 B PRO 115 n 67 PRO 115 B LYS 116 n 68 LYS 116 B ALA 117 n 69 ALA 117 B ILE 118 n 70 ILE 118 B LYS 119 n 71 LYS 119 B THR 120 n 72 THR 120 B ASP 121 n 73 ASP 121 B ASN 122 n 74 ASN 122 B GLY 123 n 75 GLY 123 B SER 124 n 76 SER 124 B CYS 125 n 77 CYS 125 B PHE 126 n 78 PHE 126 B THR 127 n 79 THR 127 B SER 128 n 80 SER 128 B LYS 129 n 81 LYS 129 B SER 130 n 82 SER 130 B THR 131 n 83 THR 131 B ARG 132 n 84 ARG 132 B GLU 133 n 85 GLU 133 B TRP 134 n 86 TRP 134 B LEU 135 n 87 LEU 135 B ALA 136 n 88 ALA 136 B ARG 137 n 89 ARG 137 B TRP 138 n 90 TRP 138 B GLY 139 n 91 GLY 139 B ILE 140 n 92 ILE 140 B ALA 141 n 93 ALA 141 B HIS 142 n 94 HIS 142 B THR 143 n 95 THR 143 B THR 144 n 96 THR 144 B GLY 145 n 97 GLY 145 B ILE 146 n 98 ILE 146 B PRO 147 n 99 PRO 147 B GLY 148 n 100 GLY 148 B ASN 149 n 101 ASN 149 B SER 150 n 102 SER 150 B GLN 151 n 103 GLN 151 B GLY 152 n 104 GLY 152 B GLN 153 n 105 GLN 153 B ALA 154 n 106 ALA 154 B MET 155 n 107 MET 155 B VAL 156 n 108 VAL 156 B GLU 157 n 109 GLU 157 B ARG 158 n 110 ARG 158 B ALA 159 n 111 ALA 159 B ASN 160 n 112 ASN 160 B ARG 161 n 113 ARG 161 B LEU 162 n 114 LEU 162 B LEU 163 n 115 LEU 163 B LYS 164 n 116 LYS 164 B ASP 165 n 117 ASP 165 B ARG 166 n 118 ARG 166 B ILE 167 n 119 ILE 167 B ARG 168 n 120 ARG 168 B VAL 169 n 121 VAL 169 B LEU 170 n 122 LEU 170 B ALA 171 n 123 ALA 171 B GLU 172 n 124 GLU 172 B GLY 173 n 125 GLY 173 B ASP 174 n 126 ASP 174 B GLY 175 n 127 GLY 175 B PHE 176 n 128 PHE 176 B MET 177 n 129 MET 177 B LYS 178 n 130 LYS 178 B ARG 179 n 131 ARG 179 B ILE 180 n 132 ILE 180 B PRO 181 n 133 PRO 181 B THR 182 n 134 THR 182 B SER 183 n 135 SER 183 B LYS 184 n 136 LYS 184 B GLN 185 n 137 GLN 185 B GLY 186 n 138 GLY 186 B GLU 187 n 139 GLU 187 B LEU 188 n 140 LEU 188 B LEU 189 n 141 LEU 189 B ALA 190 n 142 ALA 190 B LYS 191 n 143 LYS 191 B ALA 192 n 144 ALA 192 B MET 193 n 145 MET 193 B TYR 194 n 146 TYR 194 B ALA 195 n 147 ALA 195 B LEU 196 n 148 LEU 196 B ASN 197 n 149 ASN 197 B HIS 198 n 150 HIS 198 B LYS 199 n 151 LYS 199 B GLU 200 n 152 GLU 200 B ARG 201 n 153 ARG 201 B n 154 202 B n 155 203 B n 156 204 B n 157 205 B n 158 206 B THR 207 n 159 THR 207 B PRO 208 n 160 PRO 208 B ILE 209 n 161 ILE 209 B GLN 210 n 162 GLN 210 B LYS 211 n 163 LYS 211 B HIS 212 n 164 HIS 212 B TRP 213 n 165 TRP 213 B ARG 214 n 166 ARG 214 B PRO 215 n 167 PRO 215 B THR 216 n 168 THR 216 B VAL 217 n 169 VAL 217 B LEU 218 n 170 LEU 218 B THR 219 n 171 THR 219 B GLU 220 n 172 GLU 220 B GLY 221 n 173 GLY 221 B PRO 222 n 174 PRO 222 B PRO 223 n 175 PRO 223 B VAL 224 n 176 VAL 224 B LYS 225 n 177 LYS 225 B ILE 226 n 178 ILE 226 B ARG 227 n 179 ARG 227 B ILE 228 n 180 ILE 228 B GLU 229 n 181 GLU 229 B THR 230 n 182 THR 230 B GLY 231 n 183 GLY 231 B GLU 232 n 184 GLU 232 B TRP 233 n 185 TRP 233 B GLU 234 n 186 GLU 234 B LYS 235 n 187 LYS 235 B GLY 236 n 188 GLY 236 B TRP 237 n 189 TRP 237 B ASN 238 n 190 ASN 238 B VAL 239 n 191 VAL 239 B LEU 240 n 192 LEU 240 B VAL 241 n 193 VAL 241 B TRP 242 n 194 TRP 242 B GLY 243 n 195 GLY 243 B ARG 244 n 196 ARG 244 B GLY 245 n 197 GLY 245 B TYR 246 n 198 TYR 246 B ALA 247 n 199 ALA 247 B ALA 248 n 200 ALA 248 B VAL 249 n 201 VAL 249 B LYS 250 n 202 LYS 250 B ASN 251 n 203 ASN 251 B ARG 252 n 204 ARG 252 B ASP 253 n 205 ASP 253 B THR 254 n 206 THR 254 B ASP 255 n 207 ASP 255 B LYS 256 n 208 LYS 256 B VAL 257 n 209 VAL 257 B ILE 258 n 210 ILE 258 B TRP 259 n 211 TRP 259 B VAL 260 n 212 VAL 260 B PRO 261 n 213 PRO 261 B SER 262 n 214 SER 262 B ARG 263 n 215 ARG 263 B LYS 264 n 216 LYS 264 B VAL 265 n 217 VAL 265 B LYS 266 n 218 LYS 266 B PRO 267 n 219 PRO 267 B ASP 268 n 220 ASP 268 B n 221 269 B n 222 270 B n 223 271 B n 224 272 B n 225 273 B n 226 274 B n 227 275 B n 228 276 B n 229 277 B n 230 278 B n 231 279 B n 232 280 B n 233 281 B n 234 282 B n 235 283 B n 236 284 B n 237 285 B n 238 286 B author_and_software_defined_assembly PISA 2 dimeric 3470 -26 20580 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 66 A O THR 18 A N LEU 77 A N LEU 29 A N THR 80 A N THR 32 A O VAL 89 A O VAL 41 A N ILE 118 A N ILE 70 A O ALA 141 A O ALA 93 A N VAL 260 A N VAL 212 A O ALA 247 A O ALA 199 A N LYS 250 A N LYS 202 A O ASN 238 A O ASN 190 A O TRP 237 A O TRP 189 A N VAL 224 A N VAL 176 A N LYS 225 A N LYS 177 A O LYS 266 A O LYS 218 B O THR 66 B O THR 18 B N LEU 77 B N LEU 29 B N THR 80 B N THR 32 B O VAL 89 B O VAL 41 B N ILE 118 B N ILE 70 B O ALA 141 B O ALA 93 B N VAL 260 B N VAL 212 B O ALA 247 B O ALA 199 B N LYS 250 B N LYS 202 B O ASN 238 B O ASN 190 B O TRP 237 B O TRP 189 B N VAL 224 B N VAL 176 B N LYS 225 B N LYS 177 B O LYS 266 B O LYS 218 1 B CG ASP 268 B CG ASP 220 1 Y 1 B OD1 ASP 268 B OD1 ASP 220 1 Y 1 B OD2 ASP 268 B OD2 ASP 220 1 Y 1 A GLY 49 A GLY 1 1 Y 1 A VAL 50 A VAL 2 1 Y 1 A ASN 51 A ASN 3 1 Y 1 A ASP 273 A ASP 225 1 Y 1 A GLU 274 A GLU 226 1 Y 1 A VAL 275 A VAL 227 1 Y 1 A THR 276 A THR 228 1 Y 1 A LYS 277 A LYS 229 1 Y 1 A LYS 278 A LYS 230 1 Y 1 A ASP 279 A ASP 231 1 Y 1 A GLU 280 A GLU 232 1 Y 1 A ALA 281 A ALA 233 1 Y 1 A SER 282 A SER 234 1 Y 1 A PRO 283 A PRO 235 1 Y 1 A LEU 284 A LEU 236 1 Y 1 A PHE 285 A PHE 237 1 Y 1 A ALA 286 A ALA 238 1 Y 1 B GLY 49 B GLY 1 1 Y 1 B VAL 50 B VAL 2 1 Y 1 B ASN 51 B ASN 3 1 Y 1 B PRO 52 B PRO 4 1 Y 1 B ARG 53 B ARG 5 1 Y 1 B GLY 54 B GLY 6 1 Y 1 B GLY 202 B GLY 154 1 Y 1 B GLU 203 B GLU 155 1 Y 1 B ASN 204 B ASN 156 1 Y 1 B THR 205 B THR 157 1 Y 1 B LYS 206 B LYS 158 1 Y 1 B ILE 269 B ILE 221 1 Y 1 B THR 270 B THR 222 1 Y 1 B GLN 271 B GLN 223 1 Y 1 B LYS 272 B LYS 224 1 Y 1 B ASP 273 B ASP 225 1 Y 1 B GLU 274 B GLU 226 1 Y 1 B VAL 275 B VAL 227 1 Y 1 B THR 276 B THR 228 1 Y 1 B LYS 277 B LYS 229 1 Y 1 B LYS 278 B LYS 230 1 Y 1 B ASP 279 B ASP 231 1 Y 1 B GLU 280 B GLU 232 1 Y 1 B ALA 281 B ALA 233 1 Y 1 B SER 282 B SER 234 1 Y 1 B PRO 283 B PRO 235 1 Y 1 B LEU 284 B LEU 236 1 Y 1 B PHE 285 B PHE 237 1 Y 1 B ALA 286 B ALA 238 1 Y 1 10.12 1.50 119.30 129.42 A A A C N CA GLY PRO PRO 56 57 57 Y 1 A ASP 64 179.27 141.03 1 A ARG 74 -58.73 73.85 1 A SER 86 80.45 21.11 1 A VAL 96 -59.38 105.72 1 A SER 128 -42.02 168.98 1 A SER 150 -7.21 116.65 1 A GLN 151 67.84 -116.91 1 A GLN 153 -66.04 21.45 1 A PHE 176 -60.67 82.56 1 A LYS 178 -141.60 -118.57 1 A GLU 200 -46.00 166.87 1 A ASN 204 167.13 158.16 1 A GLU 220 -108.88 -65.18 1 A TRP 242 -119.71 77.08 1 B ASP 64 -178.71 141.11 1 B ARG 74 -57.44 75.02 1 B SER 86 80.53 20.96 1 B SER 128 -42.55 169.26 1 B PRO 147 -51.31 -9.67 1 B ASN 149 -126.61 -64.33 1 B SER 150 36.69 65.09 1 B GLN 151 95.21 -1.07 1 B GLN 153 -140.80 17.53 1 B PHE 176 -60.01 81.17 1 B LYS 178 -141.29 -118.08 1 B LYS 184 -80.34 43.21 1 B LYS 211 -145.19 -29.39 1 B LEU 240 -101.13 -61.20 48.0 0.817 0.000 -10.779 -3.077 0.00 2.260 THIS IS ONE OF SE-MET DATA SET COLLECTTED FOR MAD PHASING ALTHOUGH SE ATOMS WERE NOT MODELED. CAUTION SHOULD BE TAKEN IN INTERPRETING THOSE RESIDUES WITH B FACTORS IN UPPER 60S OR HIGHER 0.3370000 0.2560000 0.2560000 3.10 15.0 525 10183 5.2 5.1 RANDOM 1 THROUGHOUT 0.200 MAD PHASING ASV INTEGRASE CATALYTIC DOMAIN (1VSE) ENGH & HUBER 0.58 0.47 5.0 0.70 0.53 3.10 15.0 0 3397 0 0 3397 0.010 1.41 24.0 0.97 1 1 X-RAY DIFFRACTION 0.062 200. 2 2 X-RAY DIFFRACTION 0.097 150. 0.4590000 0.3340000 3.21 42 977 4.15 96.5 43.30 3.000 15.000 1C1A 11250 0.040 0.0600000 1 15.6000 3.400 98.6 0.1770000 3.00 3.11 5.5 1 2.90 96.5 phasing SOLVE refinement CNS data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF RSV TWO-DOMAIN INTEGRASE 1 N N 1 N N A PRO 69 A PRO 21 HELX_P A ALA 72 A ALA 24 5 1 4 A THR 97 A THR 49 HELX_P A GLY 113 A GLY 65 1 2 17 A GLY 123 A GLY 75 HELX_P A SER 128 A SER 80 1 3 6 A SER 128 A SER 80 HELX_P A GLY 139 A GLY 91 1 4 12 A GLN 153 A GLN 105 HELX_P A ASP 174 A ASP 126 1 5 22 A THR 182 A THR 134 HELX_P A LYS 184 A LYS 136 5 6 3 A GLN 185 A GLN 137 HELX_P A HIS 198 A HIS 150 1 7 14 A THR 207 A THR 159 HELX_P A ARG 214 A ARG 166 1 8 8 B PRO 69 B PRO 21 HELX_P B ALA 72 B ALA 24 5 9 4 B THR 97 B THR 49 HELX_P B GLY 113 B GLY 65 1 10 17 B GLY 123 B GLY 75 HELX_P B SER 128 B SER 80 1 11 6 B SER 128 B SER 80 HELX_P B TRP 138 B TRP 90 1 12 11 B GLN 153 B GLN 105 HELX_P B ASP 174 B ASP 126 1 13 22 B THR 182 B THR 134 HELX_P B LYS 184 B LYS 136 5 14 3 B GLN 185 B GLN 137 HELX_P B LYS 199 B LYS 151 1 15 15 B PRO 208 B PRO 160 HELX_P B TRP 213 B TRP 165 1 16 6 VIRAL PROTEIN INTEGRASE, ROUS SARCOMA VIRUS, HIV, VIRUS/VIRAL PROTEIN, Viral protein A ALA 72 A ALA 24 1 A PRO 73 A PRO 25 0.18 B ALA 72 B ALA 24 1 B PRO 73 B PRO 25 0.19 POL_RSVP UNP 1 P03354 621 858 1C1A 49 286 P03354 A 1 1 238 621 858 1C1A 49 286 P03354 B 1 1 238 1 PHE engineered mutation LYS 199 1C1A A P03354 UNP 772 151 2 PHE engineered mutation LYS 199 1C1A B P03354 UNP 772 151 3 2 5 3 2 5 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A TRP 61 A TRP 13 A LEU 67 A LEU 19 A TRP 76 A TRP 28 A ASP 82 A ASP 34 A ILE 88 A ILE 40 A HIS 93 A HIS 45 A ALA 117 A ALA 69 A ASP 121 A ASP 73 A ALA 141 A ALA 93 A GLY 145 A GLY 97 A VAL 257 A VAL 209 A PRO 261 A PRO 213 A TYR 246 A TYR 198 A ASN 251 A ASN 203 A TRP 233 A TRP 185 A TRP 242 A TRP 194 A PRO 223 A PRO 175 A ARG 227 A ARG 179 A VAL 265 A VAL 217 A PRO 267 A PRO 219 B TRP 61 B TRP 13 B LEU 67 B LEU 19 B TRP 76 B TRP 28 B ASP 82 B ASP 34 B ILE 88 B ILE 40 B HIS 93 B HIS 45 B ALA 117 B ALA 69 B ILE 118 B ILE 70 B ALA 141 B ALA 93 B HIS 142 B HIS 94 B VAL 257 B VAL 209 B PRO 261 B PRO 213 B TYR 246 B TYR 198 B ASN 251 B ASN 203 B TRP 233 B TRP 185 B GLY 243 B GLY 195 B PRO 223 B PRO 175 B ARG 227 B ARG 179 B VAL 265 B VAL 217 B PRO 267 B PRO 219 4 P 1 21 1