0.023343
0.000000
0.004255
0.000000
0.012609
0.000000
0.000000
0.000000
0.018292
0.00000
0.00000
0.00000
Olson, L.J.
Zhang, J.
Lee, Y.C.
Dahms, N.M.
Kim, J.J.-P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.33
90.00
42.840
79.310
55.570
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H13 O9 P
260.136
n
6-O-phosphono-alpha-D-mannopyranose
ALPHA-D-MANNOSE-6-PHOSPHATE; 6-O-phosphono-alpha-D-mannose; 6-O-phosphono-D-mannose; 6-O-phosphono-mannose
D-saccharide, alpha linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
S
C
N
231
S
C
N
232
S
C
N
233
S
C
N
234
R
C
N
235
N
C
N
236
N
O
N
237
N
O
N
238
N
O
N
239
N
O
N
240
N
O
N
241
N
O
N
242
N
P
N
243
N
O
N
244
N
O
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
S
C
N
260
S
C
N
261
S
C
N
262
S
C
N
263
R
C
N
264
N
C
N
265
N
O
N
266
N
O
N
267
N
O
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
S
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
MN
N
304
R
C
N
305
R
C
N
306
R
C
N
307
S
C
N
308
R
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
N
N
313
N
O
N
314
N
O
N
315
N
O
N
316
N
O
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
R
C
N
393
N
O
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
N
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
274
29889
29896
10.1074/jbc.274.42.29889
10514470
Structural basis for recognition of phosphorylated high mannose oligosaccharides by the cation-dependent mannose 6-phosphate receptor.
1999
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
93
639
10.1016/S0092-8674(00)81192-7
Molecular Basis of Lysosomal Enzyme Recognition:Enzyme Recognition: Three- Dimensional Structure of the Cation-Dependent Mannose 6-Phosphate Receptor
1998
10.2210/pdb1c39/pdb
pdb_00001c39
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277.0
1
IMAGE PLATE
1998-01-10
RIGAKU RAXIS II
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
17213.363
CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR
EXTRACYTOPLASMIC DOMAIN
N31Q, N57Q, N68Q, N87Q
2
man
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
584.418
6-O-phosphono-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose
2
man
branched
54.938
MANGANESE (II) ION
2
syn
non-polymer
18.015
water
171
nat
water
CDMPR
no
no
EKTCDLVGEKGKESEKELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNE
TQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
EKTCDLVGEKGKESEKELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNE
TQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
cabbage looper
Trichoplusia
sample
9913
Bos taurus
5B1-4
5B1-4
7111
Trichoplusia ni
BACULOVIRUS
1
2.70
54.40
6.40
pH 6.40
struct_ref_seq_dif
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
pdbx_validate_close_contact
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Database references
Advisory
Atomic model
Data collection
Database references
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2000-01-14
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-03-14
2
0
2020-07-29
2
1
2023-08-09
_struct_ref_seq_dif.details
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.src_method
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
NAG
201
n
C
NAG
1
A
NAG
202
n
C
NAG
2
B
NAG
201
n
D
NAG
1
B
NAG
202
n
D
NAG
2
P3M
1200
n
E
MAN
1
P3M
1200
n
E
MAN
2
P3M
1200
n
E
M6P
3
P3M
2200
n
F
MAN
1
P3M
2200
n
F
MAN
2
P3M
2200
n
F
M6P
3
a-D-Manp6PO3
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
STRUCRURE OF CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR BOUND TO MANNOSE 6-PHOSPHATE
RCSB
Y
RCSB
1999-07-25
REL
oligosaccharide
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
2
PDB-CARE
LINUCS
WURCS=2.0/2,3,2/[a1122h-1a_1-5][a1122h-1a_1-5_6*OPO/3O/3=O]/1-1-2/a3-b1_b3-c1
3
PDB2Glycan
1.1.0
WURCS
[][a-D-Manp]{[(3+1)][a-D-Manp]{[(3+1)][a-D-Manp]{[(6+0)][P]{}}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O3
MAN
MAN
2
1
3
O1
HO3
sing
C1
O3
M6P
MAN
3
2
3
O1
HO3
sing
n
n
n
n
n
MN
MANGANESE (II) ION
HOH
water
1M6P
PDB ENTRY 1M6P
PDB
experimental model
MN
199
4
MN
MN
199
A
MN
199
4
MN
MN
199
B
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
507
5
HOH
HOH
507
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
HOH
513
5
HOH
HOH
513
A
HOH
514
5
HOH
HOH
514
A
HOH
515
5
HOH
HOH
515
A
HOH
519
5
HOH
HOH
519
A
HOH
521
5
HOH
HOH
521
A
HOH
522
5
HOH
HOH
522
A
HOH
527
5
HOH
HOH
527
A
HOH
528
5
HOH
HOH
528
A
HOH
535
5
HOH
HOH
535
A
HOH
537
5
HOH
HOH
537
A
HOH
538
5
HOH
HOH
538
A
HOH
539
5
HOH
HOH
539
A
HOH
542
5
HOH
HOH
542
A
HOH
543
5
HOH
HOH
543
A
HOH
544
5
HOH
HOH
544
A
HOH
546
5
HOH
HOH
546
A
HOH
548
5
HOH
HOH
548
A
HOH
549
5
HOH
HOH
549
A
HOH
553
5
HOH
HOH
553
A
HOH
554
5
HOH
HOH
554
A
HOH
556
5
HOH
HOH
556
A
HOH
557
5
HOH
HOH
557
A
HOH
558
5
HOH
HOH
558
A
HOH
561
5
HOH
HOH
561
A
HOH
562
5
HOH
HOH
562
A
HOH
564
5
HOH
HOH
564
A
HOH
565
5
HOH
HOH
565
A
HOH
570
5
HOH
HOH
570
A
HOH
582
5
HOH
HOH
582
A
HOH
584
5
HOH
HOH
584
A
HOH
595
5
HOH
HOH
595
A
HOH
596
5
HOH
HOH
596
A
HOH
599
5
HOH
HOH
599
A
HOH
600
5
HOH
HOH
600
A
HOH
601
5
HOH
HOH
601
A
HOH
602
5
HOH
HOH
602
A
HOH
606
5
HOH
HOH
606
A
HOH
607
5
HOH
HOH
607
A
HOH
608
5
HOH
HOH
608
A
HOH
612
5
HOH
HOH
612
A
HOH
614
5
HOH
HOH
614
A
HOH
615
5
HOH
HOH
615
A
HOH
616
5
HOH
HOH
616
A
HOH
617
5
HOH
HOH
617
A
HOH
618
5
HOH
HOH
618
A
HOH
620
5
HOH
HOH
620
A
HOH
621
5
HOH
HOH
621
A
HOH
622
5
HOH
HOH
622
A
HOH
623
5
HOH
HOH
623
A
HOH
626
5
HOH
HOH
626
A
HOH
627
5
HOH
HOH
627
A
HOH
630
5
HOH
HOH
630
A
HOH
631
5
HOH
HOH
631
A
HOH
633
5
HOH
HOH
633
A
HOH
635
5
HOH
HOH
635
A
HOH
636
5
HOH
HOH
636
A
HOH
637
5
HOH
HOH
637
A
HOH
638
5
HOH
HOH
638
A
HOH
639
5
HOH
HOH
639
A
HOH
640
5
HOH
HOH
640
A
HOH
641
5
HOH
HOH
641
A
HOH
642
5
HOH
HOH
642
A
HOH
643
5
HOH
HOH
643
A
HOH
644
5
HOH
HOH
644
A
HOH
645
5
HOH
HOH
645
A
HOH
646
5
HOH
HOH
646
A
HOH
647
5
HOH
HOH
647
A
HOH
654
5
HOH
HOH
654
A
HOH
655
5
HOH
HOH
655
A
HOH
661
5
HOH
HOH
661
A
HOH
666
5
HOH
HOH
666
A
HOH
668
5
HOH
HOH
668
A
HOH
669
5
HOH
HOH
669
A
HOH
503
5
HOH
HOH
503
B
HOH
504
5
HOH
HOH
504
B
HOH
505
5
HOH
HOH
505
B
HOH
506
5
HOH
HOH
506
B
HOH
508
5
HOH
HOH
508
B
HOH
509
5
HOH
HOH
509
B
HOH
512
5
HOH
HOH
512
B
HOH
516
5
HOH
HOH
516
B
HOH
517
5
HOH
HOH
517
B
HOH
518
5
HOH
HOH
518
B
HOH
520
5
HOH
HOH
520
B
HOH
523
5
HOH
HOH
523
B
HOH
524
5
HOH
HOH
524
B
HOH
525
5
HOH
HOH
525
B
HOH
526
5
HOH
HOH
526
B
HOH
529
5
HOH
HOH
529
B
HOH
530
5
HOH
HOH
530
B
HOH
531
5
HOH
HOH
531
B
HOH
532
5
HOH
HOH
532
B
HOH
533
5
HOH
HOH
533
B
HOH
534
5
HOH
HOH
534
B
HOH
536
5
HOH
HOH
536
B
HOH
540
5
HOH
HOH
540
B
HOH
541
5
HOH
HOH
541
B
HOH
545
5
HOH
HOH
545
B
HOH
547
5
HOH
HOH
547
B
HOH
550
5
HOH
HOH
550
B
HOH
551
5
HOH
HOH
551
B
HOH
552
5
HOH
HOH
552
B
HOH
555
5
HOH
HOH
555
B
HOH
559
5
HOH
HOH
559
B
HOH
560
5
HOH
HOH
560
B
HOH
563
5
HOH
HOH
563
B
HOH
566
5
HOH
HOH
566
B
HOH
567
5
HOH
HOH
567
B
HOH
568
5
HOH
HOH
568
B
HOH
569
5
HOH
HOH
569
B
HOH
571
5
HOH
HOH
571
B
HOH
572
5
HOH
HOH
572
B
HOH
573
5
HOH
HOH
573
B
HOH
574
5
HOH
HOH
574
B
HOH
575
5
HOH
HOH
575
B
HOH
576
5
HOH
HOH
576
B
HOH
577
5
HOH
HOH
577
B
HOH
578
5
HOH
HOH
578
B
HOH
579
5
HOH
HOH
579
B
HOH
580
5
HOH
HOH
580
B
HOH
581
5
HOH
HOH
581
B
HOH
583
5
HOH
HOH
583
B
HOH
585
5
HOH
HOH
585
B
HOH
586
5
HOH
HOH
586
B
HOH
587
5
HOH
HOH
587
B
HOH
588
5
HOH
HOH
588
B
HOH
589
5
HOH
HOH
589
B
HOH
590
5
HOH
HOH
590
B
HOH
591
5
HOH
HOH
591
B
HOH
592
5
HOH
HOH
592
B
HOH
593
5
HOH
HOH
593
B
HOH
594
5
HOH
HOH
594
B
HOH
597
5
HOH
HOH
597
B
HOH
598
5
HOH
HOH
598
B
HOH
603
5
HOH
HOH
603
B
HOH
604
5
HOH
HOH
604
B
HOH
605
5
HOH
HOH
605
B
HOH
609
5
HOH
HOH
609
B
HOH
610
5
HOH
HOH
610
B
HOH
611
5
HOH
HOH
611
B
HOH
613
5
HOH
HOH
613
B
HOH
619
5
HOH
HOH
619
B
HOH
624
5
HOH
HOH
624
B
HOH
625
5
HOH
HOH
625
B
HOH
628
5
HOH
HOH
628
B
HOH
629
5
HOH
HOH
629
B
HOH
632
5
HOH
HOH
632
B
HOH
634
5
HOH
HOH
634
B
HOH
648
5
HOH
HOH
648
B
HOH
649
5
HOH
HOH
649
B
HOH
650
5
HOH
HOH
650
B
HOH
651
5
HOH
HOH
651
B
HOH
652
5
HOH
HOH
652
B
HOH
653
5
HOH
HOH
653
B
HOH
656
5
HOH
HOH
656
B
HOH
657
5
HOH
HOH
657
B
HOH
658
5
HOH
HOH
658
B
HOH
659
5
HOH
HOH
659
B
HOH
660
5
HOH
HOH
660
B
HOH
662
5
HOH
HOH
662
B
HOH
663
5
HOH
HOH
663
B
HOH
664
5
HOH
HOH
664
B
HOH
665
5
HOH
HOH
665
B
HOH
667
5
HOH
HOH
667
B
HOH
670
5
HOH
HOH
670
B
HOH
671
5
HOH
HOH
671
B
GLU
3
n
1
GLU
3
A
LYS
4
n
2
LYS
4
A
THR
5
n
3
THR
5
A
CYS
6
n
4
CYS
6
A
ASP
7
n
5
ASP
7
A
LEU
8
n
6
LEU
8
A
VAL
9
n
7
VAL
9
A
GLY
10
n
8
GLY
10
A
GLU
11
n
9
GLU
11
A
LYS
12
n
10
LYS
12
A
GLY
13
n
11
GLY
13
A
LYS
14
n
12
LYS
14
A
GLU
15
n
13
GLU
15
A
SER
16
n
14
SER
16
A
GLU
17
n
15
GLU
17
A
LYS
18
n
16
LYS
18
A
GLU
19
n
17
GLU
19
A
LEU
20
n
18
LEU
20
A
ALA
21
n
19
ALA
21
A
LEU
22
n
20
LEU
22
A
LEU
23
n
21
LEU
23
A
LYS
24
n
22
LYS
24
A
ARG
25
n
23
ARG
25
A
LEU
26
n
24
LEU
26
A
THR
27
n
25
THR
27
A
PRO
28
n
26
PRO
28
A
LEU
29
n
27
LEU
29
A
PHE
30
n
28
PHE
30
A
GLN
31
n
29
GLN
31
A
LYS
32
n
30
LYS
32
A
SER
33
n
31
SER
33
A
PHE
34
n
32
PHE
34
A
GLU
35
n
33
GLU
35
A
SER
36
n
34
SER
36
A
THR
37
n
35
THR
37
A
VAL
38
n
36
VAL
38
A
GLY
39
n
37
GLY
39
A
GLN
40
n
38
GLN
40
A
SER
41
n
39
SER
41
A
PRO
42
n
40
PRO
42
A
ASP
43
n
41
ASP
43
A
MET
44
n
42
MET
44
A
TYR
45
n
43
TYR
45
A
SER
46
n
44
SER
46
A
TYR
47
n
45
TYR
47
A
VAL
48
n
46
VAL
48
A
PHE
49
n
47
PHE
49
A
ARG
50
n
48
ARG
50
A
VAL
51
n
49
VAL
51
A
CYS
52
n
50
CYS
52
A
ARG
53
n
51
ARG
53
A
GLU
54
n
52
GLU
54
A
ALA
55
n
53
ALA
55
A
GLY
56
n
54
GLY
56
A
GLN
57
n
55
GLN
57
A
HIS
58
n
56
HIS
58
A
SER
59
n
57
SER
59
A
SER
60
n
58
SER
60
A
GLY
61
n
59
GLY
61
A
ALA
62
n
60
ALA
62
A
GLY
63
n
61
GLY
63
A
LEU
64
n
62
LEU
64
A
VAL
65
n
63
VAL
65
A
GLN
66
n
64
GLN
66
A
ILE
67
n
65
ILE
67
A
GLN
68
n
66
GLN
68
A
LYS
69
n
67
LYS
69
A
SER
70
n
68
SER
70
A
ASN
71
n
69
ASN
71
A
GLY
72
n
70
GLY
72
A
LYS
73
n
71
LYS
73
A
GLU
74
n
72
GLU
74
A
THR
75
n
73
THR
75
A
VAL
76
n
74
VAL
76
A
VAL
77
n
75
VAL
77
A
GLY
78
n
76
GLY
78
A
ARG
79
n
77
ARG
79
A
PHE
80
n
78
PHE
80
A
ASN
81
n
79
ASN
81
A
GLU
82
n
80
GLU
82
A
THR
83
n
81
THR
83
A
GLN
84
n
82
GLN
84
A
ILE
85
n
83
ILE
85
A
PHE
86
n
84
PHE
86
A
GLN
87
n
85
GLN
87
A
GLY
88
n
86
GLY
88
A
SER
89
n
87
SER
89
A
ASN
90
n
88
ASN
90
A
TRP
91
n
89
TRP
91
A
ILE
92
n
90
ILE
92
A
MET
93
n
91
MET
93
A
LEU
94
n
92
LEU
94
A
ILE
95
n
93
ILE
95
A
TYR
96
n
94
TYR
96
A
LYS
97
n
95
LYS
97
A
GLY
98
n
96
GLY
98
A
GLY
99
n
97
GLY
99
A
ASP
100
n
98
ASP
100
A
GLU
101
n
99
GLU
101
A
TYR
102
n
100
TYR
102
A
ASP
103
n
101
ASP
103
A
ASN
104
n
102
ASN
104
A
HIS
105
n
103
HIS
105
A
CYS
106
n
104
CYS
106
A
GLY
107
n
105
GLY
107
A
ARG
108
n
106
ARG
108
A
GLU
109
n
107
GLU
109
A
GLN
110
n
108
GLN
110
A
ARG
111
n
109
ARG
111
A
ARG
112
n
110
ARG
112
A
ALA
113
n
111
ALA
113
A
VAL
114
n
112
VAL
114
A
VAL
115
n
113
VAL
115
A
MET
116
n
114
MET
116
A
ILE
117
n
115
ILE
117
A
SER
118
n
116
SER
118
A
CYS
119
n
117
CYS
119
A
ASN
120
n
118
ASN
120
A
ARG
121
n
119
ARG
121
A
HIS
122
n
120
HIS
122
A
THR
123
n
121
THR
123
A
LEU
124
n
122
LEU
124
A
ALA
125
n
123
ALA
125
A
ASP
126
n
124
ASP
126
A
ASN
127
n
125
ASN
127
A
PHE
128
n
126
PHE
128
A
ASN
129
n
127
ASN
129
A
PRO
130
n
128
PRO
130
A
VAL
131
n
129
VAL
131
A
SER
132
n
130
SER
132
A
GLU
133
n
131
GLU
133
A
GLU
134
n
132
GLU
134
A
ARG
135
n
133
ARG
135
A
GLY
136
n
134
GLY
136
A
LYS
137
n
135
LYS
137
A
VAL
138
n
136
VAL
138
A
GLN
139
n
137
GLN
139
A
ASP
140
n
138
ASP
140
A
CYS
141
n
139
CYS
141
A
PHE
142
n
140
PHE
142
A
TYR
143
n
141
TYR
143
A
LEU
144
n
142
LEU
144
A
PHE
145
n
143
PHE
145
A
GLU
146
n
144
GLU
146
A
MET
147
n
145
MET
147
A
ASP
148
n
146
ASP
148
A
SER
149
n
147
SER
149
A
SER
150
n
148
SER
150
A
LEU
151
n
149
LEU
151
A
ALA
152
n
150
ALA
152
A
CYS
153
n
151
CYS
153
A
SER
154
n
152
SER
154
A
GLU
3
n
1
GLU
3
B
LYS
4
n
2
LYS
4
B
THR
5
n
3
THR
5
B
CYS
6
n
4
CYS
6
B
ASP
7
n
5
ASP
7
B
LEU
8
n
6
LEU
8
B
VAL
9
n
7
VAL
9
B
GLY
10
n
8
GLY
10
B
GLU
11
n
9
GLU
11
B
LYS
12
n
10
LYS
12
B
GLY
13
n
11
GLY
13
B
LYS
14
n
12
LYS
14
B
GLU
15
n
13
GLU
15
B
SER
16
n
14
SER
16
B
GLU
17
n
15
GLU
17
B
LYS
18
n
16
LYS
18
B
GLU
19
n
17
GLU
19
B
LEU
20
n
18
LEU
20
B
ALA
21
n
19
ALA
21
B
LEU
22
n
20
LEU
22
B
LEU
23
n
21
LEU
23
B
LYS
24
n
22
LYS
24
B
ARG
25
n
23
ARG
25
B
LEU
26
n
24
LEU
26
B
THR
27
n
25
THR
27
B
PRO
28
n
26
PRO
28
B
LEU
29
n
27
LEU
29
B
PHE
30
n
28
PHE
30
B
GLN
31
n
29
GLN
31
B
LYS
32
n
30
LYS
32
B
SER
33
n
31
SER
33
B
PHE
34
n
32
PHE
34
B
GLU
35
n
33
GLU
35
B
SER
36
n
34
SER
36
B
THR
37
n
35
THR
37
B
VAL
38
n
36
VAL
38
B
GLY
39
n
37
GLY
39
B
GLN
40
n
38
GLN
40
B
SER
41
n
39
SER
41
B
PRO
42
n
40
PRO
42
B
ASP
43
n
41
ASP
43
B
MET
44
n
42
MET
44
B
TYR
45
n
43
TYR
45
B
SER
46
n
44
SER
46
B
TYR
47
n
45
TYR
47
B
VAL
48
n
46
VAL
48
B
PHE
49
n
47
PHE
49
B
ARG
50
n
48
ARG
50
B
VAL
51
n
49
VAL
51
B
CYS
52
n
50
CYS
52
B
ARG
53
n
51
ARG
53
B
GLU
54
n
52
GLU
54
B
ALA
55
n
53
ALA
55
B
GLY
56
n
54
GLY
56
B
GLN
57
n
55
GLN
57
B
HIS
58
n
56
HIS
58
B
SER
59
n
57
SER
59
B
SER
60
n
58
SER
60
B
GLY
61
n
59
GLY
61
B
ALA
62
n
60
ALA
62
B
GLY
63
n
61
GLY
63
B
LEU
64
n
62
LEU
64
B
VAL
65
n
63
VAL
65
B
GLN
66
n
64
GLN
66
B
ILE
67
n
65
ILE
67
B
GLN
68
n
66
GLN
68
B
LYS
69
n
67
LYS
69
B
SER
70
n
68
SER
70
B
ASN
71
n
69
ASN
71
B
GLY
72
n
70
GLY
72
B
LYS
73
n
71
LYS
73
B
GLU
74
n
72
GLU
74
B
THR
75
n
73
THR
75
B
VAL
76
n
74
VAL
76
B
VAL
77
n
75
VAL
77
B
GLY
78
n
76
GLY
78
B
ARG
79
n
77
ARG
79
B
PHE
80
n
78
PHE
80
B
ASN
81
n
79
ASN
81
B
GLU
82
n
80
GLU
82
B
THR
83
n
81
THR
83
B
GLN
84
n
82
GLN
84
B
ILE
85
n
83
ILE
85
B
PHE
86
n
84
PHE
86
B
GLN
87
n
85
GLN
87
B
GLY
88
n
86
GLY
88
B
SER
89
n
87
SER
89
B
ASN
90
n
88
ASN
90
B
TRP
91
n
89
TRP
91
B
ILE
92
n
90
ILE
92
B
MET
93
n
91
MET
93
B
LEU
94
n
92
LEU
94
B
ILE
95
n
93
ILE
95
B
TYR
96
n
94
TYR
96
B
LYS
97
n
95
LYS
97
B
GLY
98
n
96
GLY
98
B
GLY
99
n
97
GLY
99
B
ASP
100
n
98
ASP
100
B
GLU
101
n
99
GLU
101
B
TYR
102
n
100
TYR
102
B
ASP
103
n
101
ASP
103
B
ASN
104
n
102
ASN
104
B
HIS
105
n
103
HIS
105
B
CYS
106
n
104
CYS
106
B
GLY
107
n
105
GLY
107
B
ARG
108
n
106
ARG
108
B
GLU
109
n
107
GLU
109
B
GLN
110
n
108
GLN
110
B
ARG
111
n
109
ARG
111
B
ARG
112
n
110
ARG
112
B
ALA
113
n
111
ALA
113
B
VAL
114
n
112
VAL
114
B
VAL
115
n
113
VAL
115
B
MET
116
n
114
MET
116
B
ILE
117
n
115
ILE
117
B
SER
118
n
116
SER
118
B
CYS
119
n
117
CYS
119
B
ASN
120
n
118
ASN
120
B
ARG
121
n
119
ARG
121
B
HIS
122
n
120
HIS
122
B
THR
123
n
121
THR
123
B
LEU
124
n
122
LEU
124
B
ALA
125
n
123
ALA
125
B
ASP
126
n
124
ASP
126
B
ASN
127
n
125
ASN
127
B
PHE
128
n
126
PHE
128
B
ASN
129
n
127
ASN
129
B
PRO
130
n
128
PRO
130
B
VAL
131
n
129
VAL
131
B
SER
132
n
130
SER
132
B
GLU
133
n
131
GLU
133
B
GLU
134
n
132
GLU
134
B
ARG
135
n
133
ARG
135
B
GLY
136
n
134
GLY
136
B
LYS
137
n
135
LYS
137
B
VAL
138
n
136
VAL
138
B
GLN
139
n
137
GLN
139
B
ASP
140
n
138
ASP
140
B
CYS
141
n
139
CYS
141
B
PHE
142
n
140
PHE
142
B
TYR
143
n
141
TYR
143
B
LEU
144
n
142
LEU
144
B
PHE
145
n
143
PHE
145
B
GLU
146
n
144
GLU
146
B
MET
147
n
145
MET
147
B
ASP
148
n
146
ASP
148
B
SER
149
n
147
SER
149
B
SER
150
n
148
SER
150
B
LEU
151
n
149
LEU
151
B
ALA
152
n
150
ALA
152
B
CYS
153
n
151
CYS
153
B
SER
154
n
152
SER
154
B
author_and_software_defined_assembly
PISA
2
dimeric
4850
-24
15180
B
ASP
103
B
OD1
ASP
101
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
649
J
O
HOH
1_555
87.8
B
ASP
103
B
OD1
ASP
101
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
650
J
O
HOH
1_555
88.8
B
HOH
649
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
650
J
O
HOH
1_555
171.2
B
ASP
103
B
OD1
ASP
101
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
659
J
O
HOH
1_555
77.6
B
HOH
649
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
659
J
O
HOH
1_555
93.9
B
HOH
650
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
659
J
O
HOH
1_555
93.4
B
ASP
103
B
OD1
ASP
101
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
671
J
O
HOH
1_555
167.4
B
HOH
649
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
671
J
O
HOH
1_555
95.1
B
HOH
650
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
671
J
O
HOH
1_555
89.9
B
HOH
659
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
B
HOH
671
J
O
HOH
1_555
90.0
B
ASP
103
B
OD1
ASP
101
1_555
B
MN
199
H
MN
MN
1_555
F
M6P
3
F
O1P
M6P
1_555
97.3
B
HOH
649
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
F
M6P
3
F
O1P
M6P
1_555
84.7
B
HOH
650
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
F
M6P
3
F
O1P
M6P
1_555
87.6
B
HOH
659
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
F
M6P
3
F
O1P
M6P
1_555
174.7
B
HOH
671
J
O
HOH
1_555
B
MN
199
H
MN
MN
1_555
F
M6P
3
F
O1P
M6P
1_555
95.2
A
ASN
81
GLYCOSYLATION SITE
A
ASN
79
ASN
B
ASN
81
GLYCOSYLATION SITE
B
ASN
79
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
38
A
O
VAL
36
A
N
TYR
45
A
N
TYR
43
A
O
VAL
48
A
O
VAL
46
A
N
VAL
65
A
N
VAL
63
A
N
GLN
68
A
N
GLN
66
A
O
LYS
73
A
O
LYS
71
A
O
PHE
86
A
O
PHE
84
A
N
MET
93
A
N
MET
91
A
O
TYR
96
A
O
TYR
94
A
N
ALA
113
A
N
ALA
111
A
N
VAL
114
A
N
VAL
112
A
O
TYR
143
A
O
TYR
141
A
N
ASP
148
A
N
ASP
146
A
O
ASP
126
A
O
ASP
124
B
O
VAL
38
B
O
VAL
36
B
N
TYR
45
B
N
TYR
43
B
O
VAL
48
B
O
VAL
46
B
N
VAL
65
B
N
VAL
63
B
O
GLN
66
B
O
GLN
64
B
N
THR
75
B
N
THR
73
B
O
PHE
86
B
O
PHE
84
B
N
MET
93
B
N
MET
91
B
O
TYR
96
B
O
TYR
94
B
N
ALA
113
B
N
ALA
111
B
N
VAL
114
B
N
VAL
112
B
O
TYR
143
B
O
TYR
141
B
N
ASP
148
B
N
ASP
146
B
O
ASP
126
B
O
ASP
124
1
C
C
O4
O5
NAG
NAG
1
2
1.81
1
D
D
O4
O5
NAG
NAG
1
2
1.84
1
A
ASN
90
-151.17
38.83
1
A
ALA
125
-171.14
123.61
1
B
ASP
43
-98.55
36.93
1
B
HIS
58
-146.71
10.47
PARHCSDX.PRO
TOPH19X.PRO
PARAM19.SOL
TOPH19.SOL
ION.PARAM
ION.TOP
MAN.PAR
MAN.TOP
NAG.PAR
NAG.TOP
29.80
-0.16000
0.00000
-2.93000
2.67000
0.00000
-2.51000
SIMULATED ANNEALING
0.246
0.005
0.21
0.21
1.85
40.0
2243
27632
8.000
88.4
RANDOM
146959.160
0.0000
1
RESTRAINED
THROUGHOUT
2.000
MOLECULAR REPLACEMEN
PDB ENTRY 1M6P
0.27
0.25
5.00
0.20
0.28
1.85
40.0
171
2711
134
0
2406
0.006
1.80
25.70
1.27
1.48
1.500
2.59
2.000
1.82
2.000
3.03
2.500
0.298
0.02
0.312
1.97
295
3359
6
8.10
70.80
17.10
1.850
40.000
1C39
48273
0.000
0.051
1
13.5000
1.700
88.4
0.292
1.85
1.90
1
1.30
62.3
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
3.851
phasing
X-PLOR
STRUCTURE OF CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR BOUND TO PENTAMANNOSYL PHOSPHATE
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
SER
16
A
SER
14
HELX_P
A
LEU
26
A
LEU
24
1
1
11
A
THR
27
A
THR
25
HELX_P
A
PHE
30
A
PHE
28
5
2
4
A
HIS
105
A
HIS
103
HELX_P
A
GLU
109
A
GLU
107
5
3
5
A
SER
150
A
SER
148
HELX_P
A
CYS
153
A
CYS
151
5
4
4
B
SER
16
B
SER
14
HELX_P
B
LEU
26
B
LEU
24
1
5
11
B
THR
27
B
THR
25
HELX_P
B
PHE
30
B
PHE
28
5
6
4
B
HIS
105
B
HIS
103
HELX_P
B
GLU
109
B
GLU
107
5
7
5
B
SER
150
B
SER
148
HELX_P
B
CYS
153
B
CYS
151
5
8
4
disulf
2.033
A
CYS
6
A
SG
CYS
4
1_555
A
CYS
52
A
SG
CYS
50
1_555
disulf
2.023
A
CYS
106
A
SG
CYS
104
1_555
A
CYS
141
A
SG
CYS
139
1_555
disulf
2.030
A
CYS
119
A
SG
CYS
117
1_555
A
CYS
153
A
SG
CYS
151
1_555
disulf
2.032
B
CYS
6
B
SG
CYS
4
1_555
B
CYS
52
B
SG
CYS
50
1_555
disulf
2.015
B
CYS
106
B
SG
CYS
104
1_555
B
CYS
141
B
SG
CYS
139
1_555
disulf
2.029
B
CYS
119
B
SG
CYS
117
1_555
B
CYS
153
B
SG
CYS
151
1_555
covale
1.449
one
N-Glycosylation
A
ASN
81
A
ND2
ASN
79
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.448
one
N-Glycosylation
B
ASN
81
B
ND2
ASN
79
1_555
D
NAG
1
D
C1
NAG
1_555
covale
1.393
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.387
both
D
NAG
1
D
O4
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
covale
1.451
both
sing
E
MAN
1
E
O3
MAN
1_555
E
MAN
2
E
C1
MAN
1_555
covale
1.451
both
sing
E
MAN
2
E
O3
MAN
1_555
E
M6P
3
E
C1
M6P
1_555
covale
1.460
both
sing
F
MAN
1
F
O3
MAN
1_555
F
MAN
2
F
C1
MAN
1_555
covale
1.380
both
sing
F
MAN
2
F
O3
MAN
1_555
F
M6P
3
F
C1
M6P
1_555
metalc
2.330
B
ASP
103
B
OD1
ASP
101
1_555
B
MN
199
H
MN
MN
1_555
metalc
2.086
B
MN
199
H
MN
MN
1_555
B
HOH
649
J
O
HOH
1_555
metalc
2.215
B
MN
199
H
MN
MN
1_555
B
HOH
650
J
O
HOH
1_555
metalc
2.537
B
MN
199
H
MN
MN
1_555
B
HOH
659
J
O
HOH
1_555
metalc
2.141
B
MN
199
H
MN
MN
1_555
B
HOH
671
J
O
HOH
1_555
metalc
2.251
B
MN
199
H
MN
MN
1_555
F
M6P
3
F
O1P
M6P
1_555
SIGNALING PROTEIN
RECEPTOR, CATION DEPENDENT MANNOSE 6-PHOSPHATE, P-TYPE LECT TRANSPORT, SIGNALING PROTEIN
A
SER
41
A
SER
39
1
A
PRO
42
A
PRO
40
-0.20
B
SER
41
B
SER
39
1
B
PRO
42
B
PRO
40
0.13
MPRD_BOVIN
UNP
1
P11456
31
182
1C39
3
154
P11456
A
1
1
152
31
182
1C39
3
154
P11456
B
1
1
152
1
ASN
engineered mutation
GLN
31
1C39
A
P11456
UNP
59
29
1
ASN
engineered mutation
GLN
57
1C39
A
P11456
UNP
85
55
1
ASN
engineered mutation
GLN
68
1C39
A
P11456
UNP
96
66
1
ASN
engineered mutation
GLN
87
1C39
A
P11456
UNP
115
85
2
ASN
engineered mutation
GLN
31
1C39
B
P11456
UNP
59
29
2
ASN
engineered mutation
GLN
57
1C39
B
P11456
UNP
85
55
2
ASN
engineered mutation
GLN
68
1C39
B
P11456
UNP
96
66
2
ASN
engineered mutation
GLN
87
1C39
B
P11456
UNP
115
85
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
PHE
34
A
PHE
32
A
VAL
38
A
VAL
36
A
TYR
45
A
TYR
43
A
PHE
49
A
PHE
47
A
ALA
62
A
ALA
60
A
GLN
68
A
GLN
66
A
LYS
73
A
LYS
71
A
GLN
87
A
GLN
85
A
TRP
91
A
TRP
89
A
GLY
98
A
GLY
96
A
ALA
113
A
ALA
111
A
CYS
119
A
CYS
117
A
PHE
142
A
PHE
140
A
SER
149
A
SER
147
A
ASP
126
A
ASP
124
A
GLU
134
A
GLU
132
B
PHE
34
B
PHE
32
B
VAL
38
B
VAL
36
B
TYR
45
B
TYR
43
B
PHE
49
B
PHE
47
B
ALA
62
B
ALA
60
B
GLN
68
B
GLN
66
B
GLU
74
B
GLU
72
B
GLN
87
B
GLN
85
B
TRP
91
B
TRP
89
B
LYS
97
B
LYS
95
B
ALA
113
B
ALA
111
B
CYS
119
B
CYS
117
B
PHE
142
B
PHE
140
B
SER
149
B
SER
147
B
ASP
126
B
ASP
124
B
GLU
134
B
GLU
132
4
P 1 21 1