0.008415
0.000000
0.000000
0.000000
0.008456
0.000000
0.000000
0.000000
0.012598
0.00000
0.00000
0.00000
Cirilli, M.
Zheng, R.
Scapin, G.
Blanchard, J.S.
TB Structural Genomics Consortium (TBSGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
118.831
118.257
79.377
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H30 N7 O17 P3
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
non-polymer
C7 H5 N O4
167.119
PYRIDINE-2,6-DICARBOXYLIC ACID
DIPICOLINIC ACID
non-polymer
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
S
P
N
237
N
O
N
238
N
O
N
239
N
O
N
240
N
C
N
241
R
C
N
242
N
O
N
243
R
C
N
244
N
O
N
245
R
C
N
246
N
O
N
247
R
C
Y
248
N
N
Y
249
N
C
Y
250
N
N
Y
251
N
C
Y
252
N
C
N
253
N
N
Y
254
N
N
Y
255
N
C
Y
256
N
N
Y
257
N
C
N
258
N
O
N
259
S
P
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
C
N
264
R
C
N
265
N
O
N
266
S
C
N
267
N
O
N
268
R
C
N
269
N
O
N
270
R
C
N
271
N
N
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
N
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
P
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
Y
314
N
N
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
N
320
N
C
N
321
N
O
N
322
N
O
N
323
N
C
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
R
C
N
421
N
O
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
N
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
N
465
N
C
N
466
N
C
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
Y
247
N
sing
Y
248
N
sing
Y
249
N
doub
N
250
N
sing
Y
251
N
sing
Y
252
N
sing
Y
253
N
doub
N
254
N
sing
Y
255
N
doub
N
256
N
sing
N
257
N
sing
Y
258
N
sing
Y
259
N
doub
N
260
N
sing
Y
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
42
10644
10650
10.1021/bi030044v
12962488
The three-dimensional structures of the Mycobacterium tuberculosis
dihydrodipicolinate reductase-NADH-2,6-PDC and -NADPH-2,6-PDC complexes.
Structural and mutagenic analysis of relaxed nucleotide specificity
2003
10.2210/pdb1c3v/pdb
pdb_00001c3v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
288.0
1
AREA DETECTOR
1999-05-25
XENTRONICS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
25793.383
DIHYDRODIPICOLINATE REDUCTASE
1.3.1.26
2
man
polymer
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2
syn
non-polymer
167.119
PYRIDINE-2,6-DICARBOXYLIC ACID
2
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
25
nat
water
no
no
MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFT
AERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPP
NPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEP
LLDLH
MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFT
AERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPP
NPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEP
LLDLH
A,B
Rv2773c
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mycobacterium
Escherichia
sample
1773
Mycobacterium tuberculosis
562
Escherichia coli
PLASMID
PET23A
1
2.70
54.47
VAPOR DIFFUSION, HANGING DROP
7.5
ammonium sulfate, PEG400, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 288.0K
288.0
TB Structural Genomics Consortium
TBSGC
PSI, Protein Structure Initiative
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2003-08-26
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
DIHYDRODIPICOLINATE REDUCTASE FROM MYCOBACTERIUM
TUBERCULOSIS COMPLEXED WITH NAD AND PDC
Y
RCSB
Y
RCSB
1999-07-28
REL
REL
NDP
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
PDC
PYRIDINE-2,6-DICARBOXYLIC ACID
PG4
TETRAETHYLENE GLYCOL
HOH
water
NDP
801
2
NDP
NDP
801
A
PDC
802
3
PDC
PDC
802
A
NDP
1301
2
NDP
NDP
1301
B
PDC
1302
3
PDC
PDC
1302
B
PG4
2000
4
PG4
PG4
2000
B
TIP
2001
5
HOH
HOH
2001
A
TIP
2004
5
HOH
HOH
2004
A
TIP
2005
5
HOH
HOH
2005
A
TIP
2007
5
HOH
HOH
2007
A
TIP
2014
5
HOH
HOH
2014
A
TIP
2015
5
HOH
HOH
2015
A
TIP
2023
5
HOH
HOH
2023
A
TIP
2024
5
HOH
HOH
2024
A
TIP
2002
5
HOH
HOH
2002
B
TIP
2003
5
HOH
HOH
2003
B
TIP
2006
5
HOH
HOH
2006
B
TIP
2008
5
HOH
HOH
2008
B
TIP
2009
5
HOH
HOH
2009
B
TIP
2010
5
HOH
HOH
2010
B
TIP
2011
5
HOH
HOH
2011
B
TIP
2012
5
HOH
HOH
2012
B
TIP
2013
5
HOH
HOH
2013
B
TIP
2016
5
HOH
HOH
2016
B
TIP
2017
5
HOH
HOH
2017
B
TIP
2018
5
HOH
HOH
2018
B
TIP
2019
5
HOH
HOH
2019
B
TIP
2020
5
HOH
HOH
2020
B
TIP
2021
5
HOH
HOH
2021
B
TIP
2022
5
HOH
HOH
2022
B
TIP
2025
5
HOH
HOH
2025
B
MET
501
n
1
MET
501
A
ARG
502
n
2
ARG
502
A
VAL
503
n
3
VAL
503
A
GLY
504
n
4
GLY
504
A
VAL
505
n
5
VAL
505
A
LEU
506
n
6
LEU
506
A
GLY
507
n
7
GLY
507
A
ALA
508
n
8
ALA
508
A
LYS
509
n
9
LYS
509
A
GLY
510
n
10
GLY
510
A
LYS
511
n
11
LYS
511
A
VAL
512
n
12
VAL
512
A
GLY
513
n
13
GLY
513
A
THR
514
n
14
THR
514
A
THR
515
n
15
THR
515
A
MET
516
n
16
MET
516
A
VAL
517
n
17
VAL
517
A
ARG
518
n
18
ARG
518
A
ALA
519
n
19
ALA
519
A
VAL
520
n
20
VAL
520
A
ALA
521
n
21
ALA
521
A
ALA
522
n
22
ALA
522
A
ALA
523
n
23
ALA
523
A
ASP
524
n
24
ASP
524
A
ASP
525
n
25
ASP
525
A
LEU
526
n
26
LEU
526
A
THR
527
n
27
THR
527
A
LEU
528
n
28
LEU
528
A
SER
529
n
29
SER
529
A
ALA
530
n
30
ALA
530
A
GLU
531
n
31
GLU
531
A
LEU
532
n
32
LEU
532
A
ASP
533
n
33
ASP
533
A
ALA
534
n
34
ALA
534
A
GLY
535
n
35
GLY
535
A
ASP
536
n
36
ASP
536
A
PRO
537
n
37
PRO
537
A
LEU
538
n
38
LEU
538
A
SER
539
n
39
SER
539
A
LEU
540
n
40
LEU
540
A
LEU
541
n
41
LEU
541
A
THR
542
n
42
THR
542
A
ASP
543
n
43
ASP
543
A
GLY
544
n
44
GLY
544
A
ASN
545
n
45
ASN
545
A
THR
546
n
46
THR
546
A
GLU
547
n
47
GLU
547
A
VAL
548
n
48
VAL
548
A
VAL
549
n
49
VAL
549
A
ILE
550
n
50
ILE
550
A
ASP
551
n
51
ASP
551
A
PHE
552
n
52
PHE
552
A
THR
553
n
53
THR
553
A
HIS
554
n
54
HIS
554
A
PRO
555
n
55
PRO
555
A
ASP
556
n
56
ASP
556
A
VAL
557
n
57
VAL
557
A
VAL
558
n
58
VAL
558
A
MET
559
n
59
MET
559
A
GLY
560
n
60
GLY
560
A
ASN
561
n
61
ASN
561
A
LEU
562
n
62
LEU
562
A
ALA
563
n
63
GLU
563
A
PHE
564
n
64
PHE
564
A
LEU
565
n
65
LEU
565
A
ILE
566
n
66
ILE
566
A
ASP
567
n
67
ASP
567
A
ASN
568
n
68
ASN
568
A
GLY
569
n
69
GLY
569
A
ILE
570
n
70
ILE
570
A
HIS
571
n
71
HIS
571
A
ALA
572
n
72
ALA
572
A
VAL
573
n
73
VAL
573
A
VAL
574
n
74
VAL
574
A
GLY
575
n
75
GLY
575
A
THR
576
n
76
THR
576
A
THR
577
n
77
THR
577
A
GLY
578
n
78
GLY
578
A
PHE
579
n
79
PHE
579
A
THR
580
n
80
THR
580
A
ALA
581
n
81
ALA
581
A
GLU
582
n
82
GLU
582
A
ARG
583
n
83
ARG
583
A
PHE
584
n
84
PHE
584
A
GLN
585
n
85
GLN
585
A
GLN
586
n
86
GLN
586
A
VAL
587
n
87
VAL
587
A
GLU
588
n
88
GLU
588
A
SER
589
n
89
SER
589
A
TRP
590
n
90
TRP
590
A
LEU
591
n
91
LEU
591
A
VAL
592
n
92
VAL
592
A
ALA
593
n
93
ALA
593
A
ALA
594
n
94
LYS
594
A
PRO
595
n
95
PRO
595
A
ASN
596
n
96
ASN
596
A
THR
597
n
97
THR
597
A
SER
598
n
98
SER
598
A
VAL
599
n
99
VAL
599
A
LEU
600
n
100
LEU
600
A
ILE
601
n
101
ILE
601
A
ALA
602
n
102
ALA
602
A
PRO
603
n
103
PRO
603
A
ASN
604
n
104
ASN
604
A
PHE
605
n
105
PHE
605
A
ALA
606
n
106
ALA
606
A
ILE
607
n
107
ILE
607
A
GLY
608
n
108
GLY
608
A
ALA
609
n
109
ALA
609
A
VAL
610
n
110
VAL
610
A
LEU
611
n
111
LEU
611
A
SER
612
n
112
SER
612
A
MET
613
n
113
MET
613
A
HIS
614
n
114
HIS
614
A
PHE
615
n
115
PHE
615
A
ALA
616
n
116
ALA
616
A
LYS
617
n
117
LYS
617
A
GLN
618
n
118
GLN
618
A
ALA
619
n
119
ALA
619
A
ALA
620
n
120
ALA
620
A
ARG
621
n
121
ARG
621
A
PHE
622
n
122
PHE
622
A
PHE
623
n
123
PHE
623
A
ASP
624
n
124
ASP
624
A
SER
625
n
125
SER
625
A
ALA
626
n
126
ALA
626
A
GLU
627
n
127
GLU
627
A
VAL
628
n
128
VAL
628
A
ILE
629
n
129
ILE
629
A
GLU
630
n
130
GLU
630
A
LEU
631
n
131
LEU
631
A
HIS
632
n
132
HIS
632
A
HIS
633
n
133
HIS
633
A
PRO
634
n
134
PRO
634
A
HIS
635
n
135
HIS
635
A
LYS
636
n
136
LYS
636
A
ALA
637
n
137
ALA
637
A
ASP
638
n
138
ASP
638
A
ALA
639
n
139
ALA
639
A
PRO
640
n
140
PRO
640
A
SER
641
n
141
SER
641
A
GLY
642
n
142
GLY
642
A
THR
643
n
143
THR
643
A
ALA
644
n
144
ALA
644
A
ALA
645
n
145
ALA
645
A
ARG
646
n
146
ARG
646
A
THR
647
n
147
THR
647
A
ALA
648
n
148
ALA
648
A
LYS
649
n
149
LYS
649
A
LEU
650
n
150
LEU
650
A
ILE
651
n
151
ILE
651
A
ALA
652
n
152
ALA
652
A
GLU
653
n
153
GLU
653
A
ALA
654
n
154
ALA
654
A
ARG
655
n
155
ARG
655
A
LYS
656
n
156
LYS
656
A
GLY
657
n
157
GLY
657
A
LEU
658
n
158
LEU
658
A
PRO
659
n
159
PRO
659
A
PRO
660
n
160
PRO
660
A
ASN
661
n
161
ASN
661
A
PRO
662
n
162
PRO
662
A
ASP
663
n
163
ASP
663
A
ALA
664
n
164
ALA
664
A
THR
665
n
165
THR
665
A
SER
666
n
166
SER
666
A
THR
667
n
167
THR
667
A
SER
668
n
168
SER
668
A
LEU
669
n
169
LEU
669
A
PRO
670
n
170
PRO
670
A
GLY
671
n
171
GLY
671
A
ALA
672
n
172
ALA
672
A
ARG
673
n
173
ARG
673
A
GLY
674
n
174
GLY
674
A
ALA
675
n
175
ALA
675
A
ASP
676
n
176
ASP
676
A
VAL
677
n
177
VAL
677
A
ASP
678
n
178
ASP
678
A
GLY
679
n
179
GLY
679
A
ILE
680
n
180
ILE
680
A
PRO
681
n
181
PRO
681
A
VAL
682
n
182
VAL
682
A
HIS
683
n
183
HIS
683
A
ALA
684
n
184
ALA
684
A
VAL
685
n
185
VAL
685
A
ARG
686
n
186
ARG
686
A
LEU
687
n
187
LEU
687
A
ALA
688
n
188
ALA
688
A
GLY
689
n
189
GLY
689
A
LEU
690
n
190
LEU
690
A
VAL
691
n
191
VAL
691
A
ALA
692
n
192
ALA
692
A
HIS
693
n
193
HIS
693
A
GLN
694
n
194
GLN
694
A
GLU
695
n
195
GLU
695
A
VAL
696
n
196
VAL
696
A
LEU
697
n
197
LEU
697
A
PHE
698
n
198
PHE
698
A
GLY
699
n
199
GLY
699
A
THR
700
n
200
THR
700
A
GLU
701
n
201
GLU
701
A
GLY
702
n
202
GLY
702
A
GLU
703
n
203
GLU
703
A
THR
704
n
204
THR
704
A
LEU
705
n
205
LEU
705
A
THR
706
n
206
THR
706
A
ILE
707
n
207
ILE
707
A
ARG
708
n
208
ARG
708
A
HIS
709
n
209
HIS
709
A
ASP
710
n
210
ASP
710
A
SER
711
n
211
SER
711
A
LEU
712
n
212
LEU
712
A
ASP
713
n
213
ASP
713
A
ARG
714
n
214
ARG
714
A
THR
715
n
215
THR
715
A
SER
716
n
216
SER
716
A
PHE
717
n
217
PHE
717
A
VAL
718
n
218
VAL
718
A
PRO
719
n
219
PRO
719
A
GLY
720
n
220
GLY
720
A
VAL
721
n
221
VAL
721
A
LEU
722
n
222
LEU
722
A
LEU
723
n
223
LEU
723
A
ALA
724
n
224
ALA
724
A
VAL
725
n
225
VAL
725
A
ARG
726
n
226
ARG
726
A
ARG
727
n
227
ARG
727
A
ILE
728
n
228
ILE
728
A
ALA
729
n
229
ALA
729
A
GLU
730
n
230
GLU
730
A
ARG
731
n
231
ARG
731
A
PRO
732
n
232
PRO
732
A
GLY
733
n
233
GLY
733
A
LEU
734
n
234
LEU
734
A
THR
735
n
235
THR
735
A
VAL
736
n
236
VAL
736
A
GLY
737
n
237
GLY
737
A
LEU
738
n
238
LEU
738
A
GLU
739
n
239
GLU
739
A
PRO
740
n
240
PRO
740
A
LEU
741
n
241
LEU
741
A
LEU
742
n
242
LEU
742
A
ASP
743
n
243
ASP
743
A
LEU
744
n
244
LEU
744
A
HIS
745
n
245
HIS
745
A
MET
1001
n
1
MET
1001
B
ARG
1002
n
2
ARG
1002
B
VAL
1003
n
3
VAL
1003
B
GLY
1004
n
4
GLY
1004
B
VAL
1005
n
5
VAL
1005
B
LEU
1006
n
6
LEU
1006
B
GLY
1007
n
7
GLY
1007
B
ALA
1008
n
8
ALA
1008
B
LYS
1009
n
9
LYS
1009
B
GLY
1010
n
10
GLY
1010
B
LYS
1011
n
11
LYS
1011
B
VAL
1012
n
12
VAL
1012
B
GLY
1013
n
13
GLY
1013
B
THR
1014
n
14
THR
1014
B
THR
1015
n
15
THR
1015
B
MET
1016
n
16
MET
1016
B
VAL
1017
n
17
VAL
1017
B
ARG
1018
n
18
ARG
1018
B
ALA
1019
n
19
ALA
1019
B
VAL
1020
n
20
VAL
1020
B
ALA
1021
n
21
ALA
1021
B
ALA
1022
n
22
ALA
1022
B
ALA
1023
n
23
ALA
1023
B
ASP
1024
n
24
ASP
1024
B
ASP
1025
n
25
ASP
1025
B
LEU
1026
n
26
LEU
1026
B
THR
1027
n
27
THR
1027
B
LEU
1028
n
28
LEU
1028
B
SER
1029
n
29
SER
1029
B
ALA
1030
n
30
ALA
1030
B
GLU
1031
n
31
GLU
1031
B
LEU
1032
n
32
LEU
1032
B
ASP
1033
n
33
ASP
1033
B
ALA
1034
n
34
ALA
1034
B
GLY
1035
n
35
GLY
1035
B
ASP
1036
n
36
ASP
1036
B
PRO
1037
n
37
PRO
1037
B
LEU
1038
n
38
LEU
1038
B
SER
1039
n
39
SER
1039
B
LEU
1040
n
40
LEU
1040
B
LEU
1041
n
41
LEU
1041
B
THR
1042
n
42
THR
1042
B
ASP
1043
n
43
ASP
1043
B
GLY
1044
n
44
GLY
1044
B
ASN
1045
n
45
ASN
1045
B
THR
1046
n
46
THR
1046
B
GLU
1047
n
47
GLU
1047
B
VAL
1048
n
48
VAL
1048
B
VAL
1049
n
49
VAL
1049
B
ILE
1050
n
50
ILE
1050
B
ASP
1051
n
51
ASP
1051
B
PHE
1052
n
52
PHE
1052
B
THR
1053
n
53
THR
1053
B
HIS
1054
n
54
HIS
1054
B
PRO
1055
n
55
PRO
1055
B
ASP
1056
n
56
ASP
1056
B
VAL
1057
n
57
VAL
1057
B
VAL
1058
n
58
VAL
1058
B
MET
1059
n
59
MET
1059
B
GLY
1060
n
60
GLY
1060
B
ASN
1061
n
61
ASN
1061
B
LEU
1062
n
62
LEU
1062
B
ALA
1063
n
63
GLU
1063
B
PHE
1064
n
64
PHE
1064
B
LEU
1065
n
65
LEU
1065
B
ILE
1066
n
66
ILE
1066
B
ASP
1067
n
67
ASP
1067
B
ASN
1068
n
68
ASN
1068
B
GLY
1069
n
69
GLY
1069
B
ILE
1070
n
70
ILE
1070
B
HIS
1071
n
71
HIS
1071
B
ALA
1072
n
72
ALA
1072
B
VAL
1073
n
73
VAL
1073
B
VAL
1074
n
74
VAL
1074
B
GLY
1075
n
75
GLY
1075
B
THR
1076
n
76
THR
1076
B
THR
1077
n
77
THR
1077
B
GLY
1078
n
78
GLY
1078
B
PHE
1079
n
79
PHE
1079
B
THR
1080
n
80
THR
1080
B
ALA
1081
n
81
ALA
1081
B
GLU
1082
n
82
GLU
1082
B
ARG
1083
n
83
ARG
1083
B
PHE
1084
n
84
PHE
1084
B
GLN
1085
n
85
GLN
1085
B
GLN
1086
n
86
GLN
1086
B
VAL
1087
n
87
VAL
1087
B
GLU
1088
n
88
GLU
1088
B
SER
1089
n
89
SER
1089
B
TRP
1090
n
90
TRP
1090
B
LEU
1091
n
91
LEU
1091
B
VAL
1092
n
92
VAL
1092
B
ALA
1093
n
93
ALA
1093
B
LYS
1094
n
94
LYS
1094
B
PRO
1095
n
95
PRO
1095
B
ASN
1096
n
96
ASN
1096
B
THR
1097
n
97
THR
1097
B
SER
1098
n
98
SER
1098
B
VAL
1099
n
99
VAL
1099
B
LEU
1100
n
100
LEU
1100
B
ILE
1101
n
101
ILE
1101
B
ALA
1102
n
102
ALA
1102
B
PRO
1103
n
103
PRO
1103
B
ASN
1104
n
104
ASN
1104
B
PHE
1105
n
105
PHE
1105
B
ALA
1106
n
106
ALA
1106
B
ILE
1107
n
107
ILE
1107
B
GLY
1108
n
108
GLY
1108
B
ALA
1109
n
109
ALA
1109
B
VAL
1110
n
110
VAL
1110
B
LEU
1111
n
111
LEU
1111
B
SER
1112
n
112
SER
1112
B
MET
1113
n
113
MET
1113
B
HIS
1114
n
114
HIS
1114
B
PHE
1115
n
115
PHE
1115
B
ALA
1116
n
116
ALA
1116
B
LYS
1117
n
117
LYS
1117
B
GLN
1118
n
118
GLN
1118
B
ALA
1119
n
119
ALA
1119
B
ALA
1120
n
120
ALA
1120
B
ARG
1121
n
121
ARG
1121
B
PHE
1122
n
122
PHE
1122
B
PHE
1123
n
123
PHE
1123
B
ASP
1124
n
124
ASP
1124
B
SER
1125
n
125
SER
1125
B
ALA
1126
n
126
ALA
1126
B
GLU
1127
n
127
GLU
1127
B
VAL
1128
n
128
VAL
1128
B
ILE
1129
n
129
ILE
1129
B
GLU
1130
n
130
GLU
1130
B
LEU
1131
n
131
LEU
1131
B
HIS
1132
n
132
HIS
1132
B
HIS
1133
n
133
HIS
1133
B
PRO
1134
n
134
PRO
1134
B
HIS
1135
n
135
HIS
1135
B
LYS
1136
n
136
LYS
1136
B
ALA
1137
n
137
ALA
1137
B
ASP
1138
n
138
ASP
1138
B
ALA
1139
n
139
ALA
1139
B
PRO
1140
n
140
PRO
1140
B
SER
1141
n
141
SER
1141
B
GLY
1142
n
142
GLY
1142
B
THR
1143
n
143
THR
1143
B
ALA
1144
n
144
ALA
1144
B
ALA
1145
n
145
ALA
1145
B
ARG
1146
n
146
ARG
1146
B
THR
1147
n
147
THR
1147
B
ALA
1148
n
148
ALA
1148
B
LYS
1149
n
149
LYS
1149
B
LEU
1150
n
150
LEU
1150
B
ILE
1151
n
151
ILE
1151
B
ALA
1152
n
152
ALA
1152
B
GLU
1153
n
153
GLU
1153
B
ALA
1154
n
154
ALA
1154
B
ARG
1155
n
155
ARG
1155
B
LYS
1156
n
156
LYS
1156
B
GLY
1157
n
157
GLY
1157
B
LEU
1158
n
158
LEU
1158
B
PRO
1159
n
159
PRO
1159
B
PRO
1160
n
160
PRO
1160
B
ASN
1161
n
161
ASN
1161
B
PRO
1162
n
162
PRO
1162
B
ASP
1163
n
163
ASP
1163
B
ALA
1164
n
164
ALA
1164
B
THR
1165
n
165
THR
1165
B
SER
1166
n
166
SER
1166
B
THR
1167
n
167
THR
1167
B
SER
1168
n
168
SER
1168
B
LEU
1169
n
169
LEU
1169
B
PRO
1170
n
170
PRO
1170
B
GLY
1171
n
171
GLY
1171
B
ALA
1172
n
172
ALA
1172
B
ARG
1173
n
173
ARG
1173
B
GLY
1174
n
174
GLY
1174
B
ALA
1175
n
175
ALA
1175
B
ASP
1176
n
176
ASP
1176
B
VAL
1177
n
177
VAL
1177
B
ASP
1178
n
178
ASP
1178
B
GLY
1179
n
179
GLY
1179
B
ILE
1180
n
180
ILE
1180
B
PRO
1181
n
181
PRO
1181
B
VAL
1182
n
182
VAL
1182
B
HIS
1183
n
183
HIS
1183
B
ALA
1184
n
184
ALA
1184
B
VAL
1185
n
185
VAL
1185
B
ARG
1186
n
186
ARG
1186
B
LEU
1187
n
187
LEU
1187
B
ALA
1188
n
188
ALA
1188
B
GLY
1189
n
189
GLY
1189
B
LEU
1190
n
190
LEU
1190
B
VAL
1191
n
191
VAL
1191
B
ALA
1192
n
192
ALA
1192
B
HIS
1193
n
193
HIS
1193
B
GLN
1194
n
194
GLN
1194
B
GLU
1195
n
195
GLU
1195
B
VAL
1196
n
196
VAL
1196
B
LEU
1197
n
197
LEU
1197
B
PHE
1198
n
198
PHE
1198
B
GLY
1199
n
199
GLY
1199
B
THR
1200
n
200
THR
1200
B
GLU
1201
n
201
GLU
1201
B
GLY
1202
n
202
GLY
1202
B
GLU
1203
n
203
GLU
1203
B
THR
1204
n
204
THR
1204
B
LEU
1205
n
205
LEU
1205
B
THR
1206
n
206
THR
1206
B
ILE
1207
n
207
ILE
1207
B
ARG
1208
n
208
ARG
1208
B
HIS
1209
n
209
HIS
1209
B
ASP
1210
n
210
ASP
1210
B
SER
1211
n
211
SER
1211
B
LEU
1212
n
212
LEU
1212
B
ASP
1213
n
213
ASP
1213
B
ARG
1214
n
214
ARG
1214
B
THR
1215
n
215
THR
1215
B
SER
1216
n
216
SER
1216
B
PHE
1217
n
217
PHE
1217
B
VAL
1218
n
218
VAL
1218
B
PRO
1219
n
219
PRO
1219
B
GLY
1220
n
220
GLY
1220
B
VAL
1221
n
221
VAL
1221
B
LEU
1222
n
222
LEU
1222
B
LEU
1223
n
223
LEU
1223
B
ALA
1224
n
224
ALA
1224
B
VAL
1225
n
225
VAL
1225
B
ARG
1226
n
226
ARG
1226
B
ARG
1227
n
227
ARG
1227
B
ILE
1228
n
228
ILE
1228
B
ALA
1229
n
229
ALA
1229
B
GLU
1230
n
230
GLU
1230
B
ARG
1231
n
231
ARG
1231
B
PRO
1232
n
232
PRO
1232
B
GLY
1233
n
233
GLY
1233
B
LEU
1234
n
234
LEU
1234
B
THR
1235
n
235
THR
1235
B
VAL
1236
n
236
VAL
1236
B
GLY
1237
n
237
GLY
1237
B
LEU
1238
n
238
LEU
1238
B
GLU
1239
n
239
GLU
1239
B
PRO
1240
n
240
PRO
1240
B
LEU
1241
n
241
LEU
1241
B
LEU
1242
n
242
LEU
1242
B
ASP
1243
n
243
ASP
1243
B
LEU
1244
n
244
LEU
1244
B
HIS
1245
n
245
HIS
1245
B
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
19130
-47
34580
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_755
-x+2,-y+1/2,z
crystal symmetry operation
237.6620000000
59.1285000000
0.0000000000
A
O
THR
527
A
O
THR
27
A
N
VAL
503
A
N
VAL
3
A
N
GLY
504
A
N
GLY
4
A
O
VAL
548
A
O
VAL
48
A
N
VAL
549
A
N
VAL
49
A
O
HIS
571
A
O
HIS
71
A
N
ALA
572
A
N
ALA
72
A
O
SER
598
A
O
SER
98
A
N
VAL
599
A
N
VAL
99
A
O
GLY
733
A
O
GLY
233
A
N
VAL
677
A
N
VAL
177
A
O
ILE
680
A
O
ILE
180
A
N
HIS
683
A
N
HIS
183
A
O
VAL
628
A
O
VAL
128
A
N
LEU
631
A
N
LEU
131
A
O
HIS
693
A
O
HIS
193
A
N
THR
700
A
N
THR
200
A
O
GLU
703
A
O
GLU
203
A
N
ASP
710
A
N
ASP
210
B
O
THR
1204
B
O
THR
204
B
N
SER
1211
B
N
SER
211
B
O
ALA
1192
B
O
ALA
192
B
O
GLY
1199
B
O
GLY
199
B
N
SER
1125
B
N
SER
125
B
N
VAL
1128
B
N
VAL
128
B
O
PRO
1181
B
O
PRO
181
B
O
VAL
1182
B
O
VAL
182
B
N
ALA
1175
B
N
ALA
175
B
O
THR
1027
B
O
THR
27
B
N
VAL
1003
B
N
VAL
3
B
N
GLY
1004
B
N
GLY
4
B
O
VAL
1048
B
O
VAL
48
B
N
VAL
1049
B
N
VAL
49
B
O
HIS
1071
B
O
HIS
71
B
N
ALA
1072
B
N
ALA
72
B
O
SER
1098
B
O
SER
98
B
N
VAL
1099
B
N
VAL
99
B
O
GLY
1233
B
O
GLY
233
1
A
CG
GLU
563
A
CG
GLU
63
1
Y
1
A
CD
GLU
563
A
CD
GLU
63
1
Y
1
A
OE1
GLU
563
A
OE1
GLU
63
1
Y
1
A
OE2
GLU
563
A
OE2
GLU
63
1
Y
1
A
CG
LYS
594
A
CG
LYS
94
1
Y
1
A
CD
LYS
594
A
CD
LYS
94
1
Y
1
A
CE
LYS
594
A
CE
LYS
94
1
Y
1
A
NZ
LYS
594
A
NZ
LYS
94
1
Y
1
B
CG
GLU
1063
B
CG
GLU
63
1
Y
1
B
CD
GLU
1063
B
CD
GLU
63
1
Y
1
B
OE1
GLU
1063
B
OE1
GLU
63
1
Y
1
B
OE2
GLU
1063
B
OE2
GLU
63
1
Y
1
A
C1B
NDP
801
PLANAR
1
B
C1B
NDP
1301
PLANAR
1
20.11
1.40
123.60
143.71
A
A
A
CD
NE
CZ
ARG
ARG
ARG
583
583
583
N
1
-10.30
0.50
120.30
110.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
583
583
583
N
1
9.65
0.50
120.30
129.95
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
583
583
583
N
1
20.94
1.40
123.60
144.54
B
B
B
CD
NE
CZ
ARG
ARG
ARG
1083
1083
1083
N
1
10.56
0.50
120.30
130.86
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
1083
1083
1083
N
1
-11.17
0.50
120.30
109.13
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
1083
1083
1083
N
1
A
THR
553
-102.99
-113.36
1
A
SER
589
-63.51
8.86
1
A
LYS
594
-175.82
61.45
1
A
PRO
595
-64.89
-170.21
1
A
ASN
596
74.07
-9.20
1
A
VAL
691
-125.20
-83.27
1
A
GLU
701
-49.95
104.19
1
A
THR
735
-124.88
-56.32
1
A
VAL
736
78.13
110.75
1
A
LEU
742
-153.58
9.61
1
B
THR
1053
-102.92
-113.16
1
B
PRO
1095
-62.08
-170.29
1
B
ASN
1096
74.08
-9.13
1
B
VAL
1191
-125.41
-83.54
1
B
GLU
1201
-49.94
103.97
Used torsion-angle molecular dynamics slowcool
followed by B factor and positional
refinements as implemented in X-PLOR.
0.243
0.193
0.212
0.197
2.39
30.4
736
19713
16553
random
1
2
4
Engh & Huber
2.39
30.4
25
3778
133
0
3620
0.006
1.452
26.252
1.098
41.9
2.40
30.4
1C3V
19713
16553
2.0
4.0
0.105
1
7.11
3.29
87.6
0.395
2.54
2.63
3306
1
2.7
88.68
data scaling
X-GEN
data reduction
X-GEN
model building
X-PLOR
refinement
X-PLOR
3.851
phasing
X-PLOR
DIHYDRODIPICOLINATE REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND PDC
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
The biological assembly is a dimer constructed from chain A
by a non-crystallographic binary axis.
A
VAL
512
A
VAL
12
HELX_P
A
ALA
523
A
ALA
23
1
1
12
A
LEU
538
A
LEU
38
HELX_P
A
GLY
544
A
GLY
44
1
2
7
A
HIS
554
A
HIS
54
HELX_P
A
ASN
568
A
ASN
68
1
3
15
A
THR
580
A
THR
80
HELX_P
A
VAL
592
A
VAL
92
1
4
13
A
ALA
606
A
ALA
106
HELX_P
A
ALA
620
A
ALA
120
1
5
15
A
ARG
621
A
ARG
121
HELX_P
A
PHE
623
A
PHE
123
5
6
3
A
SER
641
A
SER
141
HELX_P
A
ARG
655
A
ARG
155
1
7
15
A
ASP
713
A
ASP
213
HELX_P
A
SER
716
A
SER
216
5
8
4
A
PHE
717
A
PHE
217
HELX_P
A
ARG
727
A
ARG
227
1
9
11
A
ILE
728
A
ILE
228
HELX_P
A
ARG
731
A
ARG
231
5
10
4
B
VAL
1012
B
VAL
12
HELX_P
B
ALA
1023
B
ALA
23
1
11
12
B
LEU
1038
B
LEU
38
HELX_P
B
GLY
1044
B
GLY
44
1
12
7
B
HIS
1054
B
HIS
54
HELX_P
B
ASN
1068
B
ASN
68
1
13
15
B
THR
1080
B
THR
80
HELX_P
B
ALA
1093
B
ALA
93
1
14
14
B
ALA
1106
B
ALA
106
HELX_P
B
ALA
1120
B
ALA
120
1
15
15
B
ARG
1121
B
ARG
121
HELX_P
B
PHE
1123
B
PHE
123
5
16
3
B
SER
1141
B
SER
141
HELX_P
B
ARG
1155
B
ARG
155
1
17
15
B
ASP
1213
B
ASP
213
HELX_P
B
SER
1216
B
SER
216
5
18
4
B
PHE
1217
B
PHE
217
HELX_P
B
ARG
1227
B
ARG
227
1
19
11
B
ILE
1228
B
ILE
228
HELX_P
B
ARG
1231
B
ARG
231
5
20
4
B
LEU
1238
B
LEU
238
HELX_P
B
LEU
1242
B
LEU
242
5
21
5
OXIDOREDUCTASE
TWO-DOMAIN STRUCTURE, TB Structural Genomics Consortium, TBSGC, Structural Genomics, PSI, Protein Structure Initiative, OXIDOREDUCTASE
A
ALA
639
A
ALA
139
1
A
PRO
640
A
PRO
140
-0.68
B
ALA
1139
B
ALA
139
1
B
PRO
1140
B
PRO
140
-0.61
DAPB_MYCTU
UNP
1
1
P72024
MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFT
AERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPP
NPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEP
LLDLH
1
245
1C3V
501
745
P72024
A
1
1
245
1
245
1C3V
1001
1245
P72024
B
1
1
245
6
10
6
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
A
THR
527
A
THR
27
A
ALA
530
A
ALA
30
A
ARG
502
A
ARG
2
A
LEU
506
A
LEU
6
A
VAL
548
A
VAL
48
A
ASP
551
A
ASP
51
A
HIS
571
A
HIS
71
A
VAL
574
A
VAL
74
A
SER
598
A
SER
98
A
ILE
601
A
ILE
101
A
GLY
733
A
GLY
233
A
LEU
734
A
LEU
234
A
ALA
675
A
ALA
175
A
VAL
677
A
VAL
177
A
ILE
680
A
ILE
180
A
ARG
686
A
ARG
186
A
SER
625
A
SER
125
A
HIS
632
A
HIS
132
A
ALA
692
A
ALA
192
A
THR
700
A
THR
200
A
GLU
703
A
GLU
203
A
SER
711
A
SER
211
B
GLU
1203
B
GLU
203
B
SER
1211
B
SER
211
B
ALA
1192
B
ALA
192
B
THR
1200
B
THR
200
B
SER
1125
B
SER
125
B
HIS
1132
B
HIS
132
B
ILE
1180
B
ILE
180
B
ARG
1186
B
ARG
186
B
ALA
1175
B
ALA
175
B
VAL
1177
B
VAL
177
B
THR
1027
B
THR
27
B
ALA
1030
B
ALA
30
B
ARG
1002
B
ARG
2
B
LEU
1006
B
LEU
6
B
VAL
1048
B
VAL
48
B
ASP
1051
B
ASP
51
B
HIS
1071
B
HIS
71
B
VAL
1074
B
VAL
74
B
SER
1098
B
SER
98
B
ILE
1101
B
ILE
101
B
GLY
1233
B
GLY
233
B
VAL
1236
B
VAL
236
BINDING SITE FOR RESIDUE NDP A 801
A
NDP
801
Software
19
BINDING SITE FOR RESIDUE NDP B 1301
B
NDP
1301
Software
22
BINDING SITE FOR RESIDUE PDC A 802
A
PDC
802
Software
10
BINDING SITE FOR RESIDUE PDC B 1302
B
PDC
1302
Software
11
BINDING SITE FOR RESIDUE PG4 B 2000
B
PG4
2000
Software
6
A
GLY
507
A
GLY
7
19
1_555
A
LYS
509
A
LYS
9
19
1_555
A
GLY
510
A
GLY
10
19
1_555
A
LYS
511
A
LYS
11
19
1_555
A
VAL
512
A
VAL
12
19
1_555
A
ASP
533
A
ASP
33
19
1_555
A
ALA
534
A
ALA
34
19
1_555
A
PHE
552
A
PHE
52
19
1_555
A
THR
553
A
THR
53
19
1_555
A
VAL
557
A
VAL
57
19
1_555
A
GLY
575
A
GLY
75
19
1_555
A
THR
577
A
THR
77
19
1_555
A
ALA
602
A
ALA
102
19
1_555
A
PRO
603
A
PRO
103
19
1_555
A
ASN
604
A
ASN
104
19
1_555
A
PHE
605
A
PHE
105
19
1_555
A
LYS
636
A
LYS
136
19
1_555
A
PHE
717
A
PHE
217
19
1_555
A
PDC
802
D
PDC
19
1_555
B
GLY
1007
B
GLY
7
22
1_555
B
LYS
1009
B
LYS
9
22
1_555
B
GLY
1010
B
GLY
10
22
1_555
B
LYS
1011
B
LYS
11
22
1_555
B
VAL
1012
B
VAL
12
22
1_555
B
ASP
1033
B
ASP
33
22
1_555
B
ALA
1034
B
ALA
34
22
1_555
B
PHE
1052
B
PHE
52
22
1_555
B
THR
1053
B
THR
53
22
1_555
B
VAL
1057
B
VAL
57
22
1_555
B
GLY
1075
B
GLY
75
22
1_555
B
THR
1076
B
THR
76
22
1_555
B
THR
1077
B
THR
77
22
1_555
B
ALA
1102
B
ALA
102
22
1_555
B
PRO
1103
B
PRO
103
22
1_555
B
ASN
1104
B
ASN
104
22
1_555
B
PHE
1105
B
PHE
105
22
1_555
B
LYS
1136
B
LYS
136
22
1_555
B
PHE
1217
B
PHE
217
22
1_555
B
PDC
1302
F
PDC
22
1_555
B
HOH
2009
I
HOH
22
1_555
B
HOH
2016
I
HOH
22
1_555
A
THR
577
A
THR
77
10
1_555
A
PRO
603
A
PRO
103
10
1_555
A
ASN
604
A
ASN
104
10
1_555
A
HIS
633
A
HIS
133
10
1_555
A
LYS
636
A
LYS
136
10
1_555
A
SER
641
A
SER
141
10
1_555
A
GLY
642
A
GLY
142
10
1_555
A
THR
643
A
THR
143
10
1_555
A
ALA
692
A
ALA
192
10
1_555
A
NDP
801
C
NDP
10
1_555
B
THR
1077
B
THR
77
11
1_555
B
PRO
1103
B
PRO
103
11
1_555
B
ASN
1104
B
ASN
104
11
1_555
B
HIS
1133
B
HIS
133
11
1_555
B
LYS
1136
B
LYS
136
11
1_555
B
SER
1141
B
SER
141
11
1_555
B
GLY
1142
B
GLY
142
11
1_555
B
THR
1143
B
THR
143
11
1_555
B
ALA
1192
B
ALA
192
11
1_555
B
NDP
1301
E
NDP
11
1_555
B
HOH
2009
I
HOH
11
1_555
A
THR
704
A
THR
204
6
1_555
A
THR
706
A
THR
206
6
1_555
A
ARG
708
A
ARG
208
6
6_755
A
ASP
710
A
ASP
210
6
6_755
B
ARG
1208
B
ARG
208
6
1_555
B
ASP
1210
B
ASP
210
6
1_555
24
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