0.013984
0.000000
0.002668
0.000000
0.013885
0.000000
0.000000
0.000000
0.013963
0.00000
0.00000
0.00000
Krishnan, R.
Mochalkin, I.
Arni, R.K.
Tulinsky, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.80
90.00
71.510
72.020
72.910
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C23 H29 Br N6 O5 S
581.483
2-[2-(4-BROMO-BENZENESULFONYL)-ETHYL]-1-3-DIOXO-2,3,5,8-TETRAHYDRO-1H-[1,2,4]TRIAZOLO[1,2-A]PYRIDAZINE-5-CARBOXYLIC ACID(4-CARBAMIMIDOYL-CYCLOHEXYLMETHYL)-AMIDE
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H11 N O6 S
261.252
n
O-SULFO-L-TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
Y
161
N
C
Y
162
N
C
Y
163
N
C
Y
164
N
C
Y
165
N
C
Y
166
N
C
N
167
N
BR
N
168
N
S
N
169
N
O
N
170
N
O
N
171
N
C
N
172
N
C
N
173
S
C
N
174
N
C
N
175
N
C
N
176
N
C
Y
177
N
C
Y
178
N
C
Y
179
N
N
Y
180
N
N
N
181
N
O
N
182
N
O
Y
183
N
N
N
184
N
C
N
185
N
O
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
N
N
193
N
C
N
194
N
C
N
195
N
N
N
196
N
N
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
S
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
N
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
S
N
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
NA
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
R
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
N
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
O
N
448
N
S
N
449
N
O
N
450
N
O
N
451
N
O
N
452
N
C
N
453
N
O
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
N
471
N
C
N
472
N
C
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
doub
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
Y
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
N
185
N
doub
Y
186
N
sing
Y
187
N
sing
N
188
N
doub
Y
189
N
sing
Y
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
Y
316
N
doub
Y
317
N
sing
Y
318
N
sing
N
319
N
sing
Y
320
N
doub
N
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
doub
Y
414
N
sing
Y
415
N
sing
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
294
303
10.1107/S0907444900000068
10713516
Structure of thrombin complexed with selective non-electrophilic inhibitors having cyclohexyl moieties at P1.
2000
10.2210/pdb1c4u/pdb
pdb_00001c4u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
300
1
IMAGE PLATE
1997-08-01
RIGAKU
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
4096.534
thrombin
3.4.21.5
1
nat
polymer
29780.219
thrombin
3.4.21.5
1
nat
polymer
SYNTHETIC
1652.668
PROTEIN (HIRUGEN)
1
syn
polymer
22.990
SODIUM ION
1
syn
non-polymer
581.483
2-[2-(4-BROMO-BENZENESULFONYL)-ETHYL]-1-3-DIOXO-2,3,5,8-TETRAHYDRO-1H-[1,2,4]TRIAZOLO[1,2-A]PYRIDAZINE-5-CARBOXYLIC ACID(4-CARBAMIMIDOYL-CYCLOHEXYLMETHYL)-AMIDE
1
syn
non-polymer
18.015
water
95
nat
water
Coagulation factor II
Coagulation factor II
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
1
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
2
polypeptide(L)
no
yes
ACENEDFEGIPGE(TYS)
ACENEDFEGIPGEY
3
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
BLOOD
human
Homo
sample
9606
Homo sapiens
BLOOD
1
2.5
51.
7.5
pH 7.5
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2000-09-27
1
1
2007-10-16
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-08-09
1
5
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
RCSB
Y
RCSB
1999-09-25
REL
NA
SODIUM ION
IH1
2-[2-(4-BROMO-BENZENESULFONYL)-ETHYL]-1-3-DIOXO-2,3,5,8-TETRAHYDRO-1H-[1,2,4]TRIAZOLO[1,2-A]PYRIDAZINE-5-CARBOXYLIC ACID(4-CARBAMIMIDOYL-CYCLOHEXYLMETHYL)-AMIDE
HOH
water
Chemically synthesized
sample
RESIDUES 148 - 149 IN THE CHAIN 2 WERE DISORDERED AND ARE
NOT INCLUDED IN THE COORDINATES. THE ACTIVE SITE INHIBITOR
IS IN ITS S CHIRAL FORM.
THE IHIBITOR MOLECULE IH1 IS MOL-1245 WHICH IS MADE UP OF
THREE COMPONENTS
1TMB
PDB ENTRY 1TMB
PDB
experimental model
NA
550
4
NA
NA
550
2
IH1
370
5
IH1
IH1
370
2
HOH
427
6
HOH
HOH
427
1
HOH
432
6
HOH
HOH
432
1
HOH
445
6
HOH
HOH
445
1
HOH
447
6
HOH
HOH
447
1
HOH
459
6
HOH
HOH
459
1
HOH
460
6
HOH
HOH
460
1
HOH
505
6
HOH
HOH
505
1
HOH
520
6
HOH
HOH
520
1
HOH
400
6
HOH
HOH
400
2
HOH
401
6
HOH
HOH
401
2
HOH
402
6
HOH
HOH
402
2
HOH
403
6
HOH
HOH
403
2
HOH
404
6
HOH
HOH
404
2
HOH
405
6
HOH
HOH
405
2
HOH
406
6
HOH
HOH
406
2
HOH
407
6
HOH
HOH
407
2
HOH
409
6
HOH
HOH
409
2
HOH
410
6
HOH
HOH
410
2
HOH
411
6
HOH
HOH
411
2
HOH
413
6
HOH
HOH
413
2
HOH
414
6
HOH
HOH
414
2
HOH
415
6
HOH
HOH
415
2
HOH
416
6
HOH
HOH
416
2
HOH
418
6
HOH
HOH
418
2
HOH
419
6
HOH
HOH
419
2
HOH
420
6
HOH
HOH
420
2
HOH
421
6
HOH
HOH
421
2
HOH
422
6
HOH
HOH
422
2
HOH
423
6
HOH
HOH
423
2
HOH
425
6
HOH
HOH
425
2
HOH
426
6
HOH
HOH
426
2
HOH
428
6
HOH
HOH
428
2
HOH
429
6
HOH
HOH
429
2
HOH
431
6
HOH
HOH
431
2
HOH
433
6
HOH
HOH
433
2
HOH
434
6
HOH
HOH
434
2
HOH
435
6
HOH
HOH
435
2
HOH
436
6
HOH
HOH
436
2
HOH
437
6
HOH
HOH
437
2
HOH
438
6
HOH
HOH
438
2
HOH
439
6
HOH
HOH
439
2
HOH
440
6
HOH
HOH
440
2
HOH
441
6
HOH
HOH
441
2
HOH
442
6
HOH
HOH
442
2
HOH
443
6
HOH
HOH
443
2
HOH
444
6
HOH
HOH
444
2
HOH
446
6
HOH
HOH
446
2
HOH
448
6
HOH
HOH
448
2
HOH
449
6
HOH
HOH
449
2
HOH
450
6
HOH
HOH
450
2
HOH
451
6
HOH
HOH
451
2
HOH
452
6
HOH
HOH
452
2
HOH
453
6
HOH
HOH
453
2
HOH
454
6
HOH
HOH
454
2
HOH
455
6
HOH
HOH
455
2
HOH
456
6
HOH
HOH
456
2
HOH
457
6
HOH
HOH
457
2
HOH
458
6
HOH
HOH
458
2
HOH
461
6
HOH
HOH
461
2
HOH
462
6
HOH
HOH
462
2
HOH
463
6
HOH
HOH
463
2
HOH
464
6
HOH
HOH
464
2
HOH
465
6
HOH
HOH
465
2
HOH
502
6
HOH
HOH
502
2
HOH
503
6
HOH
HOH
503
2
HOH
504
6
HOH
HOH
504
2
HOH
506
6
HOH
HOH
506
2
HOH
507
6
HOH
HOH
507
2
HOH
508
6
HOH
HOH
508
2
HOH
510
6
HOH
HOH
510
2
HOH
512
6
HOH
HOH
512
2
HOH
514
6
HOH
HOH
514
2
HOH
515
6
HOH
HOH
515
2
HOH
516
6
HOH
HOH
516
2
HOH
517
6
HOH
HOH
517
2
HOH
518
6
HOH
HOH
518
2
HOH
519
6
HOH
HOH
519
2
HOH
521
6
HOH
HOH
521
2
HOH
522
6
HOH
HOH
522
2
HOH
523
6
HOH
HOH
523
2
HOH
524
6
HOH
HOH
524
2
HOH
526
6
HOH
HOH
526
2
HOH
527
6
HOH
HOH
527
2
HOH
528
6
HOH
HOH
528
2
HOH
529
6
HOH
HOH
529
2
HOH
530
6
HOH
HOH
530
2
HOH
531
6
HOH
HOH
531
2
HOH
532
6
HOH
HOH
532
2
HOH
533
6
HOH
HOH
533
2
HOH
534
6
HOH
HOH
534
2
HOH
535
6
HOH
HOH
535
2
HOH
536
6
HOH
HOH
536
2
HOH
537
6
HOH
HOH
537
2
HOH
430
6
HOH
HOH
430
3
HOH
525
6
HOH
HOH
525
3
n
1
H
1
1
n
2
G
1
1
n
3
F
1
1
SER
1
n
4
E
SER
1
1
GLY
1
n
5
D
GLY
1
1
GLU
1
n
6
C
GLU
1
1
ALA
1
n
7
B
ALA
1
1
ASP
1
n
8
A
ASP
1
1
CYS
1
n
9
CYS
1
1
GLY
2
n
10
GLY
2
1
LEU
3
n
11
LEU
3
1
ARG
4
n
12
ARG
4
1
PRO
5
n
13
PRO
5
1
LEU
6
n
14
LEU
6
1
PHE
7
n
15
PHE
7
1
GLU
8
n
16
GLU
8
1
LYS
9
n
17
LYS
9
1
LYS
10
n
18
LYS
10
1
SER
11
n
19
SER
11
1
LEU
12
n
20
LEU
12
1
GLU
13
n
21
GLU
13
1
ASP
14
n
22
ASP
14
1
LYS
14
n
23
A
LYS
14
1
THR
14
n
24
B
THR
14
1
GLU
14
n
25
C
GLU
14
1
ARG
14
n
26
D
ARG
14
1
GLU
14
n
27
E
GLU
14
1
LEU
14
n
28
F
LEU
14
1
LEU
14
n
29
G
LEU
14
1
GLU
14
n
30
H
GLU
14
1
SER
14
n
31
I
SER
14
1
TYR
14
n
32
J
TYR
14
1
ILE
14
n
33
K
ILE
14
1
n
34
L
14
1
n
35
M
14
1
n
36
15
1
ILE
16
n
1
ILE
16
2
VAL
17
n
2
VAL
17
2
GLU
18
n
3
GLU
18
2
GLY
19
n
4
GLY
19
2
SER
20
n
5
SER
20
2
ASP
21
n
6
ASP
21
2
ALA
22
n
7
ALA
22
2
GLU
23
n
8
GLU
23
2
ILE
24
n
9
ILE
24
2
GLY
25
n
10
GLY
25
2
MET
26
n
11
MET
26
2
SER
27
n
12
SER
27
2
PRO
28
n
13
PRO
28
2
TRP
29
n
14
TRP
29
2
GLN
30
n
15
GLN
30
2
VAL
31
n
16
VAL
31
2
MET
32
n
17
MET
32
2
LEU
33
n
18
LEU
33
2
PHE
34
n
19
PHE
34
2
ARG
35
n
20
ARG
35
2
LYS
36
n
21
LYS
36
2
SER
36
n
22
A
SER
36
2
PRO
37
n
23
PRO
37
2
GLN
38
n
24
GLN
38
2
GLU
39
n
25
GLU
39
2
LEU
40
n
26
LEU
40
2
LEU
41
n
27
LEU
41
2
CYS
42
n
28
CYS
42
2
GLY
43
n
29
GLY
43
2
ALA
44
n
30
ALA
44
2
SER
45
n
31
SER
45
2
LEU
46
n
32
LEU
46
2
ILE
47
n
33
ILE
47
2
SER
48
n
34
SER
48
2
ASP
49
n
35
ASP
49
2
ARG
50
n
36
ARG
50
2
TRP
51
n
37
TRP
51
2
VAL
52
n
38
VAL
52
2
LEU
53
n
39
LEU
53
2
THR
54
n
40
THR
54
2
ALA
55
n
41
ALA
55
2
ALA
56
n
42
ALA
56
2
HIS
57
n
43
HIS
57
2
CYS
58
n
44
CYS
58
2
LEU
59
n
45
LEU
59
2
LEU
60
n
46
LEU
60
2
TYR
60
n
47
A
TYR
60
2
PRO
60
n
48
B
PRO
60
2
PRO
60
n
49
C
PRO
60
2
TRP
60
n
50
D
TRP
60
2
ASP
60
n
51
E
ASP
60
2
LYS
60
n
52
F
LYS
60
2
ASN
60
n
53
G
ASN
60
2
PHE
60
n
54
H
PHE
60
2
THR
60
n
55
I
THR
60
2
GLU
61
n
56
GLU
61
2
ASN
62
n
57
ASN
62
2
ASP
63
n
58
ASP
63
2
LEU
64
n
59
LEU
64
2
LEU
65
n
60
LEU
65
2
VAL
66
n
61
VAL
66
2
ARG
67
n
62
ARG
67
2
ILE
68
n
63
ILE
68
2
GLY
69
n
64
GLY
69
2
LYS
70
n
65
LYS
70
2
HIS
71
n
66
HIS
71
2
SER
72
n
67
SER
72
2
ARG
73
n
68
ARG
73
2
THR
74
n
69
THR
74
2
ARG
75
n
70
ARG
75
2
TYR
76
n
71
TYR
76
2
GLU
77
n
72
GLU
77
2
ARG
77
n
73
A
ARG
77
2
ASN
78
n
74
ASN
78
2
ILE
79
n
75
ILE
79
2
GLU
80
n
76
GLU
80
2
LYS
81
n
77
LYS
81
2
ILE
82
n
78
ILE
82
2
SER
83
n
79
SER
83
2
MET
84
n
80
MET
84
2
LEU
85
n
81
LEU
85
2
GLU
86
n
82
GLU
86
2
LYS
87
n
83
LYS
87
2
ILE
88
n
84
ILE
88
2
TYR
89
n
85
TYR
89
2
ILE
90
n
86
ILE
90
2
HIS
91
n
87
HIS
91
2
PRO
92
n
88
PRO
92
2
ARG
93
n
89
ARG
93
2
TYR
94
n
90
TYR
94
2
ASN
95
n
91
ASN
95
2
TRP
96
n
92
TRP
96
2
ARG
97
n
93
ARG
97
2
GLU
97
n
94
A
GLU
97
2
ASN
98
n
95
ASN
98
2
LEU
99
n
96
LEU
99
2
ASP
100
n
97
ASP
100
2
ARG
101
n
98
ARG
101
2
ASP
102
n
99
ASP
102
2
ILE
103
n
100
ILE
103
2
ALA
104
n
101
ALA
104
2
LEU
105
n
102
LEU
105
2
MET
106
n
103
MET
106
2
LYS
107
n
104
LYS
107
2
LEU
108
n
105
LEU
108
2
LYS
109
n
106
LYS
109
2
LYS
110
n
107
LYS
110
2
PRO
111
n
108
PRO
111
2
VAL
112
n
109
VAL
112
2
ALA
113
n
110
ALA
113
2
PHE
114
n
111
PHE
114
2
SER
115
n
112
SER
115
2
ASP
116
n
113
ASP
116
2
TYR
117
n
114
TYR
117
2
ILE
118
n
115
ILE
118
2
HIS
119
n
116
HIS
119
2
PRO
120
n
117
PRO
120
2
VAL
121
n
118
VAL
121
2
CYS
122
n
119
CYS
122
2
LEU
123
n
120
LEU
123
2
PRO
124
n
121
PRO
124
2
ASP
125
n
122
ASP
125
2
ARG
126
n
123
ARG
126
2
GLU
127
n
124
GLU
127
2
THR
128
n
125
THR
128
2
ALA
129
n
126
ALA
129
2
ALA
129
n
127
A
ALA
129
2
SER
129
n
128
B
SER
129
2
LEU
129
n
129
C
LEU
129
2
LEU
130
n
130
LEU
130
2
GLN
131
n
131
GLN
131
2
ALA
132
n
132
ALA
132
2
GLY
133
n
133
GLY
133
2
TYR
134
n
134
TYR
134
2
LYS
135
n
135
LYS
135
2
GLY
136
n
136
GLY
136
2
ARG
137
n
137
ARG
137
2
VAL
138
n
138
VAL
138
2
THR
139
n
139
THR
139
2
GLY
140
n
140
GLY
140
2
TRP
141
n
141
TRP
141
2
GLY
142
n
142
GLY
142
2
ASN
143
n
143
ASN
143
2
LEU
144
n
144
LEU
144
2
LYS
145
n
145
LYS
145
2
GLU
146
n
146
GLU
146
2
THR
147
n
147
THR
147
2
n
148
A
147
2
n
149
B
147
2
n
150
C
147
2
n
151
D
147
2
n
152
E
147
2
n
153
F
147
2
n
154
G
147
2
GLY
150
n
155
GLY
150
2
GLN
151
n
156
GLN
151
2
PRO
152
n
157
PRO
152
2
SER
153
n
158
SER
153
2
VAL
154
n
159
VAL
154
2
LEU
155
n
160
LEU
155
2
GLN
156
n
161
GLN
156
2
VAL
157
n
162
VAL
157
2
VAL
158
n
163
VAL
158
2
ASN
159
n
164
ASN
159
2
LEU
160
n
165
LEU
160
2
PRO
161
n
166
PRO
161
2
ILE
162
n
167
ILE
162
2
VAL
163
n
168
VAL
163
2
GLU
164
n
169
GLU
164
2
ARG
165
n
170
ARG
165
2
PRO
166
n
171
PRO
166
2
VAL
167
n
172
VAL
167
2
CYS
168
n
173
CYS
168
2
LYS
169
n
174
LYS
169
2
ASP
170
n
175
ASP
170
2
SER
171
n
176
SER
171
2
THR
172
n
177
THR
172
2
ARG
173
n
178
ARG
173
2
ILE
174
n
179
ILE
174
2
ARG
175
n
180
ARG
175
2
ILE
176
n
181
ILE
176
2
THR
177
n
182
THR
177
2
ASP
178
n
183
ASP
178
2
ASN
179
n
184
ASN
179
2
MET
180
n
185
MET
180
2
PHE
181
n
186
PHE
181
2
CYS
182
n
187
CYS
182
2
ALA
183
n
188
ALA
183
2
GLY
184
n
189
GLY
184
2
TYR
184
n
190
A
TYR
184
2
LYS
185
n
191
LYS
185
2
PRO
186
n
192
PRO
186
2
ASP
186
n
193
A
ASP
186
2
GLU
186
n
194
B
GLU
186
2
GLY
186
n
195
C
GLY
186
2
LYS
186
n
196
D
LYS
186
2
ARG
187
n
197
ARG
187
2
GLY
188
n
198
GLY
188
2
ASP
189
n
199
ASP
189
2
ALA
190
n
200
ALA
190
2
CYS
191
n
201
CYS
191
2
GLU
192
n
202
GLU
192
2
GLY
193
n
203
GLY
193
2
ASP
194
n
204
ASP
194
2
SER
195
n
205
SER
195
2
GLY
196
n
206
GLY
196
2
GLY
197
n
207
GLY
197
2
PRO
198
n
208
PRO
198
2
PHE
199
n
209
PHE
199
2
VAL
200
n
210
VAL
200
2
MET
201
n
211
MET
201
2
LYS
202
n
212
LYS
202
2
SER
203
n
213
SER
203
2
PRO
204
n
214
PRO
204
2
PHE
204
n
215
A
PHE
204
2
ASN
204
n
216
B
ASN
204
2
ASN
205
n
217
ASN
205
2
ARG
206
n
218
ARG
206
2
TRP
207
n
219
TRP
207
2
TYR
208
n
220
TYR
208
2
GLN
209
n
221
GLN
209
2
MET
210
n
222
MET
210
2
GLY
211
n
223
GLY
211
2
ILE
212
n
224
ILE
212
2
VAL
213
n
225
VAL
213
2
SER
214
n
226
SER
214
2
TRP
215
n
227
TRP
215
2
GLY
216
n
228
GLY
216
2
GLU
217
n
229
GLU
217
2
GLY
219
n
230
GLY
219
2
CYS
220
n
231
CYS
220
2
ASP
221
n
232
ASP
221
2
ARG
221
n
233
A
ARG
221
2
ASP
222
n
234
ASP
222
2
GLY
223
n
235
GLY
223
2
LYS
224
n
236
LYS
224
2
TYR
225
n
237
TYR
225
2
GLY
226
n
238
GLY
226
2
PHE
227
n
239
PHE
227
2
TYR
228
n
240
TYR
228
2
THR
229
n
241
THR
229
2
HIS
230
n
242
HIS
230
2
VAL
231
n
243
VAL
231
2
PHE
232
n
244
PHE
232
2
ARG
233
n
245
ARG
233
2
LEU
234
n
246
LEU
234
2
LYS
235
n
247
LYS
235
2
LYS
236
n
248
LYS
236
2
TRP
237
n
249
TRP
237
2
ILE
238
n
250
ILE
238
2
GLN
239
n
251
GLN
239
2
LYS
240
n
252
LYS
240
2
VAL
241
n
253
VAL
241
2
ILE
242
n
254
ILE
242
2
ASP
243
n
255
ASP
243
2
GLN
244
n
256
GLN
244
2
PHE
245
n
257
PHE
245
2
GLY
246
n
258
GLY
246
2
GLU
247
n
259
GLU
247
2
n
1
554
3
n
2
555
3
n
3
556
3
n
4
557
3
n
5
558
3
n
6
559
3
PHE
560
n
7
PHE
560
3
GLU
561
n
8
GLU
561
3
GLU
562
n
9
GLY
562
3
ILE
563
n
10
ILE
563
3
PRO
564
n
11
PRO
564
3
GLU
565
n
12
GLY
565
3
GLU
566
n
13
GLU
566
3
TYS
567
n
14
TYS
567
3
author_defined_assembly
3
trimeric
A
2
ARG
221
B
O
ARG
233
1_555
2
NA
550
D
NA
NA
1_555
2
LYS
224
B
O
LYS
236
1_555
88.5
A
2
ARG
221
B
O
ARG
233
1_555
2
NA
550
D
NA
NA
1_555
2
HOH
522
G
O
HOH
1_555
130.4
2
LYS
224
B
O
LYS
236
1_555
2
NA
550
D
NA
NA
1_555
2
HOH
522
G
O
HOH
1_555
76.9
3
TYS
567
O-SULFO-L-TYROSINE
C
TYS
14
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
O
LYS
81
B
O
LYS
77
2
N
ILE
68
B
N
ILE
63
2
O
LEU
65
B
O
LEU
60
2
N
PHE
34
B
N
PHE
19
2
O
VAL
31
B
O
VAL
16
2
N
ALA
44
B
N
ALA
30
2
O
VAL
17
B
O
VAL
2
2
N
MET
106
B
N
MET
103
2
O
LEU
105
B
O
LEU
102
2
N
TYR
89
B
N
TYR
85
2
O
GLY
136
B
O
GLY
136
2
N
LEU
160
B
N
LEU
165
2
O
PHE
181
B
O
PHE
186
2
N
TYR
228
B
N
TYR
240
2
O
PHE
227
B
O
PHE
239
2
N
TRP
215
B
N
TRP
227
2
O
TYR
208
B
O
TYR
220
2
N
MET
201
B
N
MET
211
K
1
1
O
ILE
14
A
O
ILE
33
1
Y
H
1
1
THR
1
A
THR
1
1
Y
G
1
1
PHE
1
A
PHE
2
1
Y
F
1
1
GLY
1
A
GLY
3
1
Y
L
1
1
ASP
14
A
ASP
34
1
Y
M
1
1
GLY
14
A
GLY
35
1
Y
1
1
ARG
15
A
ARG
36
1
Y
A
1
2
TRP
147
B
TRP
148
1
Y
B
1
2
THR
147
B
THR
149
1
Y
C
1
2
ALA
147
B
ALA
150
1
Y
D
1
2
ASN
147
B
ASN
151
1
Y
E
1
2
VAL
147
B
VAL
152
1
Y
F
1
2
GLY
147
B
GLY
153
1
Y
G
1
2
LYS
147
B
LYS
154
1
Y
1
3
ALA
554
C
ALA
1
1
Y
1
3
CYS
555
C
CYS
2
1
Y
1
3
GLU
556
C
GLU
3
1
Y
1
3
ASN
557
C
ASN
4
1
Y
1
3
GLU
558
C
GLU
5
1
Y
1
3
ASP
559
C
ASP
6
1
Y
K
1
1
2
CG2
OH
ILE
TYR
14
134
1.73
1
2
2
CG
NZ
GLU
LYS
86
109
1.86
B
1
2
2
N
OE1
LYS
GLU
185
186
1.92
1
2
2
NH1
OE1
ARG
GLU
50
86
1.93
I
K
1
1
1
O
N
SER
ILE
14
14
2.17
1
2
2
NZ
OE1
LYS
GLU
70
80
2.17
1
2
GLY
197
-10.48
1
2
ARG
165
0.102
SIDE CHAIN
1
2
ARG
233
0.144
SIDE CHAIN
A
A
A
1
16.86
1.90
123.30
140.16
1
1
1
OD1
CG
OD2
ASP
ASP
ASP
1
1
1
N
A
A
A
1
-12.91
0.90
118.30
105.39
1
1
1
CB
CG
OD1
ASP
ASP
ASP
1
1
1
N
1
-9.62
1.40
123.60
113.98
1
1
1
CD
NE
CZ
ARG
ARG
ARG
4
4
4
N
1
9.18
1.20
123.30
132.48
1
1
1
OE1
CD
OE2
GLU
GLU
GLU
13
13
13
N
A
A
A
1
-14.98
2.10
120.10
105.12
1
1
1
CA
C
O
LYS
LYS
LYS
14
14
14
N
C
C
C
1
12.20
2.00
118.30
130.50
1
1
1
CG
CD
OE2
GLU
GLU
GLU
14
14
14
N
D
D
D
1
-4.24
0.50
120.30
116.06
1
1
1
NE
CZ
NH2
ARG
ARG
ARG
14
14
14
N
J
J
J
1
-5.17
0.80
121.30
116.13
1
1
1
CG
CD1
CE1
TYR
TYR
TYR
14
14
14
N
J
J
J
1
5.88
0.90
119.80
125.68
1
1
1
CD1
CE1
CZ
TYR
TYR
TYR
14
14
14
N
J
J
J
1
18.07
2.10
120.10
138.17
1
1
1
CA
C
O
TYR
TYR
TYR
14
14
14
N
J
J
K
1
-16.12
2.20
117.20
101.08
1
1
1
CA
C
N
TYR
TYR
ILE
14
14
14
Y
K
K
K
1
14.99
1.90
111.00
125.99
1
1
1
CA
CB
CG1
ILE
ILE
ILE
14
14
14
N
1
8.42
0.90
118.30
126.72
2
2
2
CB
CG
OD1
ASP
ASP
ASP
21
21
21
N
1
-13.11
2.10
111.80
98.69
2
2
2
CG
CD
NE
ARG
ARG
ARG
35
35
35
N
1
9.29
1.40
123.60
132.89
2
2
2
CD
NE
CZ
ARG
ARG
ARG
35
35
35
N
1
-4.88
0.50
120.30
115.42
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
35
35
35
N
1
9.57
0.90
118.30
127.87
2
2
2
CB
CG
OD2
ASP
ASP
ASP
49
49
49
N
A
A
A
1
9.05
0.60
121.00
130.05
2
2
2
CB
CG
CD2
TYR
TYR
TYR
60
60
60
N
A
A
A
1
-7.50
0.60
121.00
113.50
2
2
2
CB
CG
CD1
TYR
TYR
TYR
60
60
60
N
E
E
E
1
-9.05
0.90
118.30
109.25
2
2
2
CB
CG
OD1
ASP
ASP
ASP
60
60
60
N
1
-13.54
2.20
117.20
103.66
2
2
2
CA
C
N
LEU
LEU
VAL
65
65
66
Y
1
12.96
1.60
122.70
135.66
2
2
2
O
C
N
LEU
LEU
VAL
65
65
66
Y
1
-9.25
1.10
119.40
110.15
2
2
2
NH1
CZ
NH2
ARG
ARG
ARG
67
67
67
N
1
8.32
0.50
120.30
128.62
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
67
67
67
N
1
3.83
0.50
120.30
124.13
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
1
17.57
2.10
120.10
137.67
2
2
2
CA
C
O
GLU
GLU
GLU
77
77
77
N
1
8.34
1.20
123.30
131.64
2
2
2
OE1
CD
OE2
GLU
GLU
GLU
80
80
80
N
1
-17.00
2.00
118.30
101.30
2
2
2
CG
CD
OE2
GLU
GLU
GLU
80
80
80
N
1
9.82
1.60
122.70
132.52
2
2
2
O
C
N
MET
MET
LEU
84
84
85
Y
1
12.61
1.40
123.60
136.21
2
2
2
CD
NE
CZ
ARG
ARG
ARG
93
93
93
N
1
3.40
0.50
120.30
123.70
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
93
93
93
N
1
-7.26
0.50
120.30
113.04
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
93
93
93
N
1
3.80
0.50
120.30
124.10
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
97
97
97
N
1
14.48
2.20
117.20
131.68
2
2
2
CA
C
N
LEU
LEU
ASP
99
99
100
Y
1
-15.94
1.60
122.70
106.76
2
2
2
O
C
N
LEU
LEU
ASP
99
99
100
Y
1
-5.74
0.90
118.30
112.56
2
2
2
CB
CG
OD2
ASP
ASP
ASP
102
102
102
N
1
16.97
1.80
110.60
127.57
2
2
2
N
CA
CB
LYS
LYS
LYS
110
110
110
N
1
5.85
0.90
118.30
124.15
2
2
2
CB
CG
OD1
ASP
ASP
ASP
116
116
116
N
1
29.73
1.40
123.60
153.33
2
2
2
CD
NE
CZ
ARG
ARG
ARG
126
126
126
N
1
10.91
0.50
120.30
131.21
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
126
126
126
N
1
-6.83
0.50
120.30
113.47
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
126
126
126
N
A
A
A
1
13.51
1.50
110.10
123.61
2
2
2
CB
CA
C
ALA
ALA
ALA
129
129
129
N
1
17.17
1.90
110.20
127.37
2
2
2
CB
CA
C
LEU
LEU
LEU
130
130
130
N
1
4.50
0.50
120.30
124.80
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
137
137
137
N
1
17.79
2.30
121.90
139.69
2
2
2
OD1
CG
ND2
ASN
ASN
ASN
143
143
143
N
1
-12.05
2.00
121.60
109.55
2
2
2
CB
CG
OD1
ASN
ASN
ASN
143
143
143
N
1
-14.58
2.20
111.50
96.92
2
2
2
N
CA
CB
VAL
VAL
VAL
154
154
154
N
1
-10.92
1.70
111.00
100.08
2
2
2
CB
CG
CD1
LEU
LEU
LEU
160
160
160
N
1
-3.71
0.50
120.30
116.59
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
165
165
165
N
1
9.69
1.60
122.70
132.39
2
2
2
O
C
N
VAL
VAL
CYS
167
167
168
Y
1
16.66
2.60
111.60
128.26
2
2
2
CB
CG
CD
LYS
LYS
LYS
169
169
169
N
1
-11.74
1.90
110.30
98.56
2
2
2
N
CA
CB
THR
THR
THR
172
172
172
N
1
-3.40
0.50
120.30
116.90
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
175
175
175
N
1
3.75
0.50
120.30
124.05
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
175
175
175
N
1
17.83
2.00
110.90
128.73
2
2
2
CA
CB
CG2
ILE
ILE
ILE
176
176
176
N
1
14.59
1.40
112.40
126.99
2
2
2
CA
CB
CG2
THR
THR
THR
177
177
177
N
1
-13.55
0.90
118.30
104.75
2
2
2
CB
CG
OD2
ASP
ASP
ASP
178
178
178
N
1
12.03
1.60
122.70
134.73
2
2
2
O
C
N
MET
MET
PHE
180
180
181
Y
1
15.19
1.10
114.20
129.39
2
2
2
CA
CB
SG
CYS
CYS
CYS
182
182
182
N
1
-14.11
2.00
110.40
96.29
2
2
2
CB
CA
C
LYS
LYS
LYS
185
185
185
N
1
-8.48
1.10
119.40
110.92
2
2
2
NH1
CZ
NH2
ARG
ARG
ARG
187
187
187
N
1
14.90
0.50
120.30
135.20
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
187
187
187
N
1
-7.37
0.50
120.30
112.93
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
187
187
187
N
1
7.23
1.20
111.50
118.73
2
2
2
CB
CA
C
CYS
CYS
CYS
191
191
191
N
1
6.84
1.10
114.20
121.04
2
2
2
CA
CB
SG
CYS
CYS
CYS
191
191
191
N
1
-5.80
0.90
118.30
112.50
2
2
2
CB
CG
OD1
ASP
ASP
ASP
194
194
194
N
1
9.87
1.50
110.90
120.77
2
2
2
CA
CB
CG1
VAL
VAL
VAL
200
200
200
N
1
10.88
1.60
122.70
133.58
2
2
2
O
C
N
MET
MET
LYS
201
201
202
Y
A
A
B
1
9.73
1.60
122.70
132.43
2
2
2
O
C
N
PHE
PHE
ASN
204
204
204
Y
B
1
15.56
2.50
121.70
137.26
2
2
2
C
N
CA
ASN
ASN
ASN
204
205
205
Y
1
19.34
2.00
110.40
129.74
2
2
2
CB
CA
C
ASN
ASN
ASN
205
205
205
N
1
18.76
2.50
121.70
140.46
2
2
2
C
N
CA
ASN
ARG
ARG
205
206
206
Y
1
-3.67
0.60
121.00
117.33
2
2
2
CB
CG
CD2
TYR
TYR
TYR
208
208
208
N
1
-12.12
2.00
110.40
98.28
2
2
2
CB
CA
C
GLN
GLN
GLN
209
209
209
N
1
-8.88
1.20
123.30
114.42
2
2
2
OE1
CD
OE2
GLU
GLU
GLU
217
217
217
N
1
13.46
2.00
118.30
131.76
2
2
2
CG
CD
OE2
GLU
GLU
GLU
217
217
217
N
1
6.02
0.90
118.30
124.32
2
2
2
CB
CG
OD1
ASP
ASP
ASP
221
221
221
N
A
A
A
1
-8.77
0.50
120.30
111.53
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
221
221
221
N
A
A
A
1
10.65
0.50
120.30
130.95
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
221
221
221
N
1
11.41
1.80
110.60
122.01
2
2
2
N
CA
CB
ASP
ASP
ASP
222
222
222
N
1
11.23
0.90
118.30
129.53
2
2
2
CB
CG
OD2
ASP
ASP
ASP
222
222
222
N
1
-13.20
1.90
113.40
100.20
2
2
2
CA
CB
CG
TYR
TYR
TYR
225
225
225
N
1
-3.64
0.60
121.00
117.36
2
2
2
CB
CG
CD2
TYR
TYR
TYR
225
225
225
N
1
17.17
1.60
122.70
139.87
2
2
2
O
C
N
GLY
GLY
PHE
226
226
227
Y
1
-11.35
1.80
110.60
99.25
2
2
2
N
CA
CB
HIS
HIS
HIS
230
230
230
N
1
5.28
0.50
120.30
125.58
2
2
2
NE
CZ
NH1
ARG
ARG
ARG
233
233
233
N
1
-8.38
0.50
120.30
111.92
2
2
2
NE
CZ
NH2
ARG
ARG
ARG
233
233
233
N
1
10.95
1.80
110.60
121.55
2
2
2
N
CA
CB
GLN
GLN
GLN
244
244
244
N
C
1
1
GLU
1
177.26
-97.89
B
1
1
ALA
1
168.55
-47.35
1
1
PHE
7
-112.51
-83.97
A
1
2
SER
36
-171.21
116.76
1
2
GLN
38
-42.20
93.68
1
2
ALA
44
179.16
178.63
1
2
SER
48
-159.74
-154.34
A
1
2
TYR
60
-156.96
76.72
G
1
2
ASN
60
-160.98
89.31
1
2
HIS
71
-135.80
-47.39
A
1
2
ARG
77
-18.87
-67.55
1
2
TYR
94
-39.26
114.41
A
1
2
GLU
97
-140.05
-55.57
1
2
SER
115
-169.28
-167.78
1
2
SER
214
-126.36
-69.51
20.70
0.167
2.1
7.0
11633
75.
1
THROUGHOUT
4.0
MOLECULAR REPLACEMENT
PDB ENTRY 1TMB
0.2
7.0
2.1
7.0
95
2479
37
0
2347
0.015
0.020
0.035
0.030
0.055
0.050
1.1
1.0
1.8
1.5
2.6
2.0
3.8
2.5
0.027
0.030
0.15
0.20
0.22
0.60
0.31
0.60
0.28
0.60
4.
3
20.
15
30.
20
2.1
15
1C4U
14337
1
0.06
0.12
1
14.4
2.1
61
0.09
2.1
2.3
2.5
0.25
1
2.
74
model building
X-PLOR
refinement
PROLSQ
phasing
X-PLOR
SELECTIVE NON ELECTROPHILIC THROMBIN INHIBITORS WITH CYCLOHEXYL MOIETIES.
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
1
GLU
8
A
GLU
16
HELX_P
1
LYS
10
A
LYS
18
5
1
3
1
GLU
14
A
GLU
25
HELX_P
1
SER
14
A
SER
31
1
2
7
C
I
2
ALA
56
B
ALA
42
HELX_P
2
CYS
58
B
CYS
44
5
3
3
2
PRO
60
B
PRO
48
HELX_P
2
TRP
60
B
TRP
50
5
4
3
B
D
2
GLU
61
B
GLU
56
HELX_P
2
ASP
63
B
ASP
58
5
5
3
2
ARG
126
B
ARG
123
HELX_P
2
LEU
129
B
LEU
129
1
6
7
C
2
ARG
165
B
ARG
170
HELX_P
2
SER
171
B
SER
176
1
7
7
2
PRO
186
B
PRO
192
HELX_P
2
GLU
186
B
GLU
194
5
8
3
B
2
PHE
232
B
PHE
244
HELX_P
2
PHE
245
B
PHE
257
5
9
14
disulf
1.982
1
CYS
1
A
SG
CYS
9
1_555
2
CYS
122
B
SG
CYS
119
1_555
disulf
2.080
2
CYS
42
B
SG
CYS
28
1_555
2
CYS
58
B
SG
CYS
44
1_555
disulf
2.082
2
CYS
168
B
SG
CYS
173
1_555
2
CYS
182
B
SG
CYS
187
1_555
disulf
2.066
2
CYS
191
B
SG
CYS
201
1_555
2
CYS
220
B
SG
CYS
231
1_555
covale
1.332
both
3
GLU
566
C
C
GLU
13
1_555
3
TYS
567
C
N
TYS
14
1_555
metalc
2.713
A
2
ARG
221
B
O
ARG
233
1_555
2
NA
550
D
NA
NA
1_555
metalc
2.276
2
LYS
224
B
O
LYS
236
1_555
2
NA
550
D
NA
NA
1_555
metalc
2.784
2
HOH
522
G
O
HOH
1_555
2
NA
550
D
NA
NA
1_555
HYDROLASE/HYDROLASE INHIBITOR
COMPLEX (SERINE PROTEASE-INHIBITOR), HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
2
SER
36
B
SER
22
A
1
2
PRO
37
B
PRO
23
-0.51
THRB_HUMAN
UNP
1
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
THRB_HUMAN
UNP
2
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
HIR2_HIRME
UNP
3
55
P28504
DFEEIPEEYLQ
328
363
1C4U
1
15
P00734
H
1
1
1
36
364
622
1C4U
16
247
P00734
2
2
1
259
55
63
1C4U
559
567
P28504
3
3
6
14
3
insertion
ALA
554
1C4U
3
P28504
UNP
1
3
insertion
CYS
555
1C4U
3
P28504
UNP
2
3
insertion
GLU
556
1C4U
3
P28504
UNP
3
3
insertion
ASN
557
1C4U
3
P28504
UNP
4
3
insertion
GLU
558
1C4U
3
P28504
UNP
5
3
GLU
conflict
GLY
562
1C4U
3
P28504
UNP
58
9
3
GLU
conflict
GLY
565
1C4U
3
P28504
UNP
61
12
4
3
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
2
LYS
81
B
LYS
77
2
MET
84
B
MET
80
2
LEU
64
B
LEU
59
2
ILE
68
B
ILE
63
2
GLN
30
B
GLN
15
2
ARG
35
B
ARG
20
2
GLU
39
B
GLU
25
2
SER
45
B
SER
31
2
TRP
51
B
TRP
37
2
THR
54
B
THR
40
2
ALA
104
B
ALA
101
2
LEU
108
B
LEU
105
2
LEU
59
B
LEU
45
2
ILE
90
B
ILE
86
2
LYS
135
B
LYS
135
2
GLY
140
B
GLY
140
2
GLN
156
B
GLN
161
2
PRO
161
B
PRO
166
2
MET
180
B
MET
185
2
ALA
183
B
ALA
188
2
GLY
226
B
GLY
238
2
HIS
230
B
HIS
242
2
TRP
207
B
TRP
219
2
TRP
215
B
TRP
227
2
PRO
198
B
PRO
208
2
LYS
202
B
LYS
212
ACTIVE SITE.
Author
3
BINDING SITE FOR RESIDUE NA 2 550
2
NA
550
Software
3
BINDING SITE FOR RESIDUE IH1 2 370
2
IH1
370
Software
16
BINDING SITE FOR CHAIN 3 OF PROTEIN (HIRUGEN)
Software
12
2
HIS
57
B
HIS
43
3
1_555
2
ASP
102
B
ASP
99
3
1_555
2
SER
195
B
SER
205
3
1_555
2
ARG
221
B
ARG
233
A
3
1_555
2
LYS
224
B
LYS
236
3
1_555
2
HOH
522
G
HOH
3
1_555
2
HIS
57
B
HIS
43
16
1_555
2
TYR
60
B
TYR
47
A
16
1_555
2
TRP
60
B
TRP
50
D
16
1_555
2
GLU
97
B
GLU
94
A
16
1_555
2
LEU
99
B
LEU
96
16
1_555
2
ILE
174
B
ILE
179
16
1_555
2
ASP
189
B
ASP
199
16
1_555
2
ALA
190
B
ALA
200
16
1_555
2
SER
195
B
SER
205
16
1_555
2
SER
214
B
SER
226
16
1_555
2
TRP
215
B
TRP
227
16
1_555
2
GLY
216
B
GLY
228
16
1_555
2
GLU
217
B
GLU
229
16
1_555
2
GLY
219
B
GLY
230
16
1_555
2
GLY
226
B
GLY
238
16
1_555
2
HOH
534
G
HOH
16
1_555
2
GLN
38
B
GLN
24
12
1_555
2
LEU
40
B
LEU
26
12
1_555
2
ARG
67
B
ARG
62
12
1_555
2
ARG
73
B
ARG
68
12
1_555
2
THR
74
B
THR
69
12
1_555
2
ARG
75
B
ARG
70
12
1_555
2
ARG
75
B
ARG
70
12
2_555
2
TYR
76
B
TYR
71
12
1_555
2
LYS
81
B
LYS
77
12
1_555
2
ILE
82
B
ILE
78
12
1_555
3
HOH
430
H
HOH
12
1_555
3
HOH
525
H
HOH
12
1_555
5
C 1 2 1