21.30
15.906
-0.030
33.483
A
CA
ALA
1
ATOM
A
CA
ALA
1
1
1.00
1
C
12.53
18.534
-2.666
34.083
A
CA
ASP
2
ATOM
A
CA
ASP
1
2
1.00
1
C
18.42
20.232
-3.640
30.813
A
CA
GLY
3
ATOM
A
CA
GLY
1
3
1.00
1
C
19.17
21.613
-6.875
32.192
A
CA
ALA
4
ATOM
A
CA
ALA
1
4
1.00
1
C
17.10
18.275
-8.120
33.522
A
CA
ALA
5
ATOM
A
CA
ALA
1
5
1.00
1
C
15.26
16.393
-7.100
30.333
A
CA
LEU
6
ATOM
A
CA
LEU
1
6
1.00
1
C
13.56
18.953
-8.834
28.134
A
CA
TYR
7
ATOM
A
CA
TYR
1
7
1.00
1
C
17.08
18.049
-12.172
29.692
A
CA
LYS
8
ATOM
A
CA
LYS
1
8
1.00
1
C
10.41
15.089
-12.392
27.290
A
CA
SER
9
ATOM
A
CA
SER
1
9
1.00
1
C
12.82
17.609
-12.058
24.377
A
CA
CYS
10
ATOM
A
CA
CYS
1
10
1.00
1
C
19.64
20.141
-14.756
25.173
A
CA
VAL
11
ATOM
A
CA
VAL
1
11
1.00
1
C
22.86
18.288
-17.613
23.386
A
CA
GLY
12
ATOM
A
CA
GLY
1
12
1.00
1
C
22.84
19.124
-16.081
19.978
A
CA
CYS
13
ATOM
A
CA
CYS
1
13
1.00
1
C
11.39
21.977
-13.606
20.580
A
CA
HIS
14
ATOM
A
CA
HIS
1
14
1.00
1
C
34.01
24.046
-15.641
23.058
A
CA
GLY
15
ATOM
A
CA
GLY
1
15
1.00
1
C
23.39
25.309
-14.678
26.518
A
CA
ALA
16
ATOM
A
CA
ALA
1
16
1.00
1
C
23.88
28.313
-12.808
25.173
A
CA
ASP
17
ATOM
A
CA
ASP
1
17
1.00
1
C
23.66
26.273
-11.451
22.251
A
CA
GLY
18
ATOM
A
CA
GLY
1
18
1.00
1
C
24.28
28.472
-13.130
19.622
A
CA
SER
19
ATOM
A
CA
SER
1
19
1.00
1
C
33.12
25.774
-15.198
17.918
A
CA
LYS
20
ATOM
A
CA
LYS
1
20
1.00
1
C
25.81
24.484
-14.577
14.410
A
CA
GLN
21
ATOM
A
CA
GLN
1
21
1.00
1
C
27.56
20.784
-14.721
15.303
A
CA
ALA
22
ATOM
A
CA
ALA
1
22
1.00
1
C
21.84
18.940
-17.400
13.429
A
CA
MET
23
ATOM
A
CA
MET
1
23
1.00
1
C
31.45
21.939
-17.440
11.058
A
CA
GLY
24
ATOM
A
CA
GLY
1
24
1.00
1
C
22.27
21.209
-13.969
9.584
A
CA
VAL
25
ATOM
A
CA
VAL
1
25
1.00
1
C
15.93
22.852
-10.604
10.013
A
CA
GLY
26
ATOM
A
CA
GLY
1
26
1.00
1
C
15.61
25.210
-9.156
12.574
A
CA
HIS
27
ATOM
A
CA
HIS
1
27
1.00
1
C
16.76
26.099
-10.148
16.179
A
CA
ALA
28
ATOM
A
CA
ALA
1
28
1.00
1
C
19.47
25.429
-7.435
18.756
A
CA
VAL
29
ATOM
A
CA
VAL
1
29
1.00
1
C
22.38
28.898
-7.856
20.356
A
CA
LYS
30
ATOM
A
CA
LYS
1
30
1.00
1
C
35.23
31.371
-5.108
19.488
A
CA
GLY
31
ATOM
A
CA
GLY
1
31
1.00
1
C
13.86
28.861
-2.494
18.450
A
CA
GLN
32
ATOM
A
CA
GLN
1
32
1.00
1
C
34.52
28.535
0.905
20.082
A
CA
LYS
33
ATOM
A
CA
LYS
1
33
1.00
1
C
28.09
25.543
1.718
22.299
A
CA
ALA
34
ATOM
A
CA
ALA
1
34
1.00
1
C
38.23
24.312
4.532
20.008
A
CA
ASP
35
ATOM
A
CA
ASP
1
35
1.00
1
C
26.41
24.460
2.228
17.013
A
CA
GLU
36
ATOM
A
CA
GLU
1
36
1.00
1
C
20.78
22.646
-0.625
18.811
A
CA
LEU
37
ATOM
A
CA
LEU
1
37
1.00
1
C
18.45
20.013
1.827
20.070
A
CA
PHE
38
ATOM
A
CA
PHE
1
38
1.00
1
C
15.62
19.320
3.208
16.563
A
CA
LYS
39
ATOM
A
CA
LYS
1
39
1.00
1
C
13.14
18.886
-0.377
15.335
A
CA
LYS
40
ATOM
A
CA
LYS
1
40
1.00
1
C
15.01
16.352
-1.300
18.017
A
CA
LEU
41
ATOM
A
CA
LEU
1
41
1.00
1
C
20.03
14.476
1.882
17.234
A
CA
LYS
42
ATOM
A
CA
LYS
1
42
1.00
1
C
19.05
14.772
0.919
13.510
A
CA
GLY
43
ATOM
A
CA
GLY
1
43
1.00
1
C
22.89
13.112
-2.450
14.096
A
CA
TYR
44
ATOM
A
CA
TYR
1
44
1.00
1
C
44.81
10.145
-0.855
15.920
A
CA
ALA
45
ATOM
A
CA
ALA
1
45
1.00
1
C
42.36
9.586
1.904
13.373
A
CA
ASP
46
ATOM
A
CA
ASP
1
46
1.00
1
C
30.91
10.139
-0.740
10.666
A
CA
GLY
47
ATOM
A
CA
GLY
1
47
1.00
1
C
21.36
13.064
1.188
9.099
A
CA
SER
48
ATOM
A
CA
SER
1
48
1.00
1
C
27.09
16.001
-1.165
9.918
A
CA
TYR
49
ATOM
A
CA
TYR
1
49
1.00
1
C
13.12
16.400
-4.876
9.154
A
CA
GLY
50
ATOM
A
CA
GLY
1
50
1.00
1
C
16.12
17.276
-7.900
6.986
A
CA
GLY
51
ATOM
A
CA
GLY
1
51
1.00
1
C
19.22
15.236
-10.879
5.972
A
CA
GLU
52
ATOM
A
CA
GLU
1
52
1.00
1
C
18.90
14.084
-11.895
9.471
A
CA
LYS
53
ATOM
A
CA
LYS
1
53
1.00
1
C
20.70
13.431
-8.339
10.636
A
CA
LYS
54
ATOM
A
CA
LYS
1
54
1.00
1
C
26.44
9.818
-9.089
11.695
A
CA
ALA
55
ATOM
A
CA
ALA
1
55
1.00
1
C
28.83
11.176
-11.396
14.400
A
CA
VAL
56
ATOM
A
CA
VAL
1
56
1.00
1
C
11.87
12.793
-8.324
16.058
A
CA
MET
57
ATOM
A
CA
MET
1
57
1.00
1
C
17.41
9.877
-6.036
15.360
A
CA
THR
58
ATOM
A
CA
THR
1
58
1.00
1
C
15.51
7.484
-8.303
17.253
A
CA
ASN
59
ATOM
A
CA
ASN
1
59
1.00
1
C
16.81
9.860
-8.027
20.265
A
CA
LEU
60
ATOM
A
CA
LEU
1
60
1.00
1
C
20.95
11.159
-4.472
20.489
A
CA
VAL
61
ATOM
A
CA
VAL
1
61
1.00
1
C
21.67
7.650
-3.020
20.429
A
CA
LYS
62
ATOM
A
CA
LYS
1
62
1.00
1
C
14.65
7.264
-4.546
23.938
A
CA
ARG
63
ATOM
A
CA
ARG
1
63
1.00
1
C
18.90
9.968
-2.239
25.328
A
CA
TYR
64
ATOM
A
CA
TYR
1
64
1.00
1
C
13.11
10.301
1.424
26.122
A
CA
SER
65
ATOM
A
CA
SER
1
65
1.00
1
C
15.52
12.928
3.736
24.733
A
CA
ASP
66
ATOM
A
CA
ASP
1
66
1.00
1
C
20.16
14.741
3.819
28.113
A
CA
GLU
67
ATOM
A
CA
GLU
1
67
1.00
1
C
13.15
14.713
0.033
28.220
A
CA
GLU
68
ATOM
A
CA
GLU
1
68
1.00
1
C
17.42
16.179
-0.135
24.687
A
CA
MET
69
ATOM
A
CA
MET
1
69
1.00
1
C
19.94
18.870
2.352
25.659
A
CA
LYS
70
ATOM
A
CA
LYS
1
70
1.00
1
C
14.74
19.726
0.239
28.704
A
CA
ALA
71
ATOM
A
CA
ALA
1
71
1.00
1
C
15.21
19.917
-2.973
26.634
A
CA
MET
72
ATOM
A
CA
MET
1
72
1.00
1
C
16.60
22.078
-1.044
24.071
A
CA
ALA
73
ATOM
A
CA
ALA
1
73
1.00
1
C
20.55
24.335
0.077
26.893
A
CA
ASP
74
ATOM
A
CA
ASP
1
74
1.00
1
C
16.43
24.702
-3.523
28.161
A
CA
TYR
75
ATOM
A
CA
TYR
1
75
1.00
1
C
23.37
25.254
-5.103
24.699
A
CA
MET
76
ATOM
A
CA
MET
1
76
1.00
1
C
14.70
27.925
-2.540
23.956
A
CA
SER
77
ATOM
A
CA
SER
1
77
1.00
1
C
26.05
29.886
-3.818
26.956
A
CA
LYS
78
ATOM
A
CA
LYS
1
78
1.00
1
C
17.69
29.642
-7.515
26.112
A
CA
LEU
79
ATOM
A
CA
LEU
1
79
1.00
1
C
13.85
18.797
-8.681
15.302
A
CHA
HEM
80
HETATM
B
CHA
HEM
2
1.00
1
C
10.68
18.880
-7.168
19.912
A
CHB
HEM
80
HETATM
B
CHB
HEM
2
1.00
1
C
11.52
15.896
-10.764
20.980
A
CHC
HEM
80
HETATM
B
CHC
HEM
2
1.00
1
C
24.40
16.623
-12.751
16.636
A
CHD
HEM
80
HETATM
B
CHD
HEM
2
1.00
1
C
24.53
19.081
-7.918
16.420
A
C1A
HEM
80
HETATM
B
C1A
HEM
2
1.00
1
C
21.67
19.821
-6.717
16.477
A
C2A
HEM
80
HETATM
B
C2A
HEM
2
1.00
1
C
17.75
19.847
-6.292
17.760
A
C3A
HEM
80
HETATM
B
C3A
HEM
2
1.00
1
C
34.42
19.111
-7.242
18.539
A
C4A
HEM
80
HETATM
B
C4A
HEM
2
1.00
1
C
15.28
20.530
-5.033
18.318
A
CMA
HEM
80
HETATM
B
CMA
HEM
2
1.00
1
C
13.90
20.539
-6.021
15.278
A
CAA
HEM
80
HETATM
B
CAA
HEM
2
1.00
1
C
13.40
21.998
-6.387
15.054
A
CBA
HEM
80
HETATM
B
CBA
HEM
2
1.00
1
C
14.59
22.592
-5.649
13.829
A
CGA
HEM
80
HETATM
B
CGA
HEM
2
1.00
1
C
19.69
23.604
-4.974
13.963
A
O1A
HEM
80
HETATM
B
O1A
HEM
2
1.00
1
O
19.97
21.828
-5.816
12.826
A
O2A
HEM
80
HETATM
B
O2A
HEM
2
1.00
1
O
10.45
17.989
-7.972
20.560
A
C1B
HEM
80
HETATM
B
C1B
HEM
2
1.00
1
C
7.57
17.568
-7.781
22.022
A
C2B
HEM
80
HETATM
B
C2B
HEM
2
1.00
1
C
11.33
16.707
-8.762
22.273
A
C3B
HEM
80
HETATM
B
C3B
HEM
2
1.00
1
C
14.76
16.597
-9.616
21.090
A
C4B
HEM
80
HETATM
B
C4B
HEM
2
1.00
1
C
8.28
18.126
-6.579
22.780
A
CMB
HEM
80
HETATM
B
CMB
HEM
2
1.00
1
C
11.94
15.974
-9.017
23.667
A
CAB
HEM
80
HETATM
B
CAB
HEM
2
1.00
1
C
9.15
15.060
-8.010
23.958
A
CBB
HEM
80
HETATM
B
CBB
HEM
2
1.00
1
C
19.32
15.937
-11.669
19.952
A
C1C
HEM
80
HETATM
B
C1C
HEM
2
1.00
1
C
23.62
15.382
-12.973
19.990
A
C2C
HEM
80
HETATM
B
C2C
HEM
2
1.00
1
C
24.28
15.543
-13.520
18.779
A
C3C
HEM
80
HETATM
B
C3C
HEM
2
1.00
1
C
23.11
16.234
-12.563
17.953
A
C4C
HEM
80
HETATM
B
C4C
HEM
2
1.00
1
C
13.86
14.669
-13.574
21.240
A
CMC
HEM
80
HETATM
B
CMC
HEM
2
1.00
1
C
15.78
15.211
-14.977
18.358
A
CAC
HEM
80
HETATM
B
CAC
HEM
2
1.00
1
C
25.30
13.924
-15.342
18.158
A
CBC
HEM
80
HETATM
B
CBC
HEM
2
1.00
1
C
12.06
17.168
-11.764
15.859
A
C1D
HEM
80
HETATM
B
C1D
HEM
2
1.00
1
C
14.02
17.282
-11.782
14.353
A
C2D
HEM
80
HETATM
B
C2D
HEM
2
1.00
1
C
22.18
17.909
-10.686
14.022
A
C3D
HEM
80
HETATM
B
C3D
HEM
2
1.00
1
C
16.22
18.182
-9.884
15.209
A
C4D
HEM
80
HETATM
B
C4D
HEM
2
1.00
1
C
10.24
16.756
-13.022
13.581
A
CMD
HEM
80
HETATM
B
CMD
HEM
2
1.00
1
C
13.49
18.179
-10.157
12.560
A
CAD
HEM
80
HETATM
B
CAD
HEM
2
1.00
1
C
8.67
16.805
-9.669
12.021
A
CBD
HEM
80
HETATM
B
CBD
HEM
2
1.00
1
C
19.61
17.012
-9.056
10.624
A
CGD
HEM
80
HETATM
B
CGD
HEM
2
1.00
1
C
22.36
16.820
-9.815
9.650
A
O1D
HEM
80
HETATM
B
O1D
HEM
2
1.00
1
O
19.29
17.365
-7.883
10.622
A
O2D
HEM
80
HETATM
B
O2D
HEM
2
1.00
1
O
14.45
18.630
-8.269
17.731
A
NA
HEM
80
HETATM
B
NA
HEM
2
1.00
1
N
10.43
17.396
-9.083
20.147
A
NB
HEM
80
HETATM
B
NB
HEM
2
1.00
1
N
18.00
16.504
-11.399
18.663
A
NC
HEM
80
HETATM
B
NC
HEM
2
1.00
1
N
12.94
17.751
-10.609
16.275
A
ND
HEM
80
HETATM
B
ND
HEM
2
1.00
1
N
14.99
17.525
-9.798
18.168
A
FE
HEM
80
HETATM
B
FE
HEM
2
1.00
1
FE
0.023419
0.000000
0.000000
0.000000
0.023419
0.000000
0.000000
0.000000
0.009671
0.00000
0.00000
0.00000
Nakagawa, A.
Higuchi, Y.
Yasuoka, N.
Katsube, Y.
Yaga, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.700
42.700
103.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
Y
144
N
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
Y
175
N
N
N
176
N
N
Y
177
N
N
N
178
N
N
N
179
N
FE
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
S
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
R
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
sing
Y
223
N
doub
Y
224
N
doub
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
Y
308
N
sing
Y
309
N
sing
N
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
JA
J.Biochem.(Tokyo)
JOBIAO
0418
0021-924X
108
701
703
1964450
S-class cytochromes c have a variety of folding patterns: structure of cytochrome c-553 from Desulfovibrio vulgaris determined by the multi-wavelength anomalous dispersion method.
1990
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
46
16
Structure Determination of Cytochrome C-553 from Desulfovibrio Vulgaris Miyazaki F Determined by the Multi-Wavelength Anomalous Dispersion Method
1990
JA
J.Biochem.(Tokyo)
JOBIAO
0418
0021-924X
99
605
Crystallographic Study of Cytochrome C553 from Desulfovibrio Vulgaris Miyazaki
1986
10.2210/pdb1c53/pdb
pdb_00001c53
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
8411.668
CYTOCHROME C553
1
man
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
no
no
ADGAALYKSCVGCHGADGSKQAMGVGHAVKGQKADELFKKLKGYADGSYGGEKKAVMTNLVKRYSDEEMKAMADYMSKL
ADGAALYKSCVGCHGADGSKQAMGVGHAVKGQKADELFKKLKGYADGSYGGEKKAVMTNLVKRYSDEEMKAMADYMSKL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Desulfovibrio
Desulfovibrio vulgaris
Miyazaki
sample
883
Desulfovibrio vulgaris str. 'Miyazaki F'
2.80
56.10
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1993-10-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CA ATOMS ONLY
Y
BNL
1991-08-26
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
HEM
80
2
HEM
HEM
80
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
GLY
3
n
3
GLY
3
A
ALA
4
n
4
ALA
4
A
ALA
5
n
5
ALA
5
A
LEU
6
n
6
LEU
6
A
TYR
7
n
7
TYR
7
A
LYS
8
n
8
LYS
8
A
SER
9
n
9
SER
9
A
CYS
10
n
10
CYS
10
A
VAL
11
n
11
VAL
11
A
GLY
12
n
12
GLY
12
A
CYS
13
n
13
CYS
13
A
HIS
14
n
14
HIS
14
A
GLY
15
n
15
GLY
15
A
ALA
16
n
16
ALA
16
A
ASP
17
n
17
ASP
17
A
GLY
18
n
18
GLY
18
A
SER
19
n
19
SER
19
A
LYS
20
n
20
LYS
20
A
GLN
21
n
21
GLN
21
A
ALA
22
n
22
ALA
22
A
MET
23
n
23
MET
23
A
GLY
24
n
24
GLY
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
HIS
27
n
27
HIS
27
A
ALA
28
n
28
ALA
28
A
VAL
29
n
29
VAL
29
A
LYS
30
n
30
LYS
30
A
GLY
31
n
31
GLY
31
A
GLN
32
n
32
GLN
32
A
LYS
33
n
33
LYS
33
A
ALA
34
n
34
ALA
34
A
ASP
35
n
35
ASP
35
A
GLU
36
n
36
GLU
36
A
LEU
37
n
37
LEU
37
A
PHE
38
n
38
PHE
38
A
LYS
39
n
39
LYS
39
A
LYS
40
n
40
LYS
40
A
LEU
41
n
41
LEU
41
A
LYS
42
n
42
LYS
42
A
GLY
43
n
43
GLY
43
A
TYR
44
n
44
TYR
44
A
ALA
45
n
45
ALA
45
A
ASP
46
n
46
ASP
46
A
GLY
47
n
47
GLY
47
A
SER
48
n
48
SER
48
A
TYR
49
n
49
TYR
49
A
GLY
50
n
50
GLY
50
A
GLY
51
n
51
GLY
51
A
GLU
52
n
52
GLU
52
A
LYS
53
n
53
LYS
53
A
LYS
54
n
54
LYS
54
A
ALA
55
n
55
ALA
55
A
VAL
56
n
56
VAL
56
A
MET
57
n
57
MET
57
A
THR
58
n
58
THR
58
A
ASN
59
n
59
ASN
59
A
LEU
60
n
60
LEU
60
A
VAL
61
n
61
VAL
61
A
LYS
62
n
62
LYS
62
A
ARG
63
n
63
ARG
63
A
TYR
64
n
64
TYR
64
A
SER
65
n
65
SER
65
A
ASP
66
n
66
ASP
66
A
GLU
67
n
67
GLU
67
A
GLU
68
n
68
GLU
68
A
MET
69
n
69
MET
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
MET
72
n
72
MET
72
A
ALA
73
n
73
ALA
73
A
ASP
74
n
74
ASP
74
A
TYR
75
n
75
TYR
75
A
MET
76
n
76
MET
76
A
SER
77
n
77
SER
77
A
LYS
78
n
78
LYS
78
A
LEU
79
n
79
LEU
79
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.1940000
1.8
10.0
8855
1
1.0
1.8
10.0
0
122
43
0
79
0.19
refinement
PROLSQ
S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD
1
N
N
2
N
N
ELECTRON TRANSPORT
ELECTRON TRANSPORT
CY553_DESVM
UNP
1
1
P00120
MKRILVVMSICAALAFGVSAAMAADGAALYKSCVGCHGADGSKQAMGVGHAVKGQKADELFKKLKGYADGSYGGEKKAVM
TNLVKRYSDEEMKAMADYMSKL
24
102
1C53
1
79
P00120
A
1
1
79
BINDING SITE FOR RESIDUE HEM A 80
A
HEM
80
Software
5
A
CYS
10
A
CYS
10
5
1_555
A
GLY
50
A
GLY
50
5
1_555
A
GLY
51
A
GLY
51
5
1_555
A
LYS
53
A
LYS
53
5
1_555
A
LYS
54
A
LYS
54
5
1_555
96
P 43 21 2