0.006303
0.000000
0.000000
0.000000
0.006303
0.000000
0.000000
0.000000
0.006303
0.00000
0.00000
0.00000
Ariyoshi, M.
Nishino, T.
Iwasaki, H.
Shinagawa, H.
Morikawa, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.0
90.0
90.0
158.65
158.65
158.65
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
S
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
R
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
8257
8262
10.1073/pnas.140212997
10890893
Crystal structure of the holliday junction DNA in complex with a single RuvA tetramer.
2000
10.2210/pdb1c7y/pdb
pdb_00001c7y
100.0
1
IMAGE PLATE
1998-12-15
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
BL-6B
Photon Factory
1.000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6B
4061.655
DNA (5'-D(P*DAP*DAP*DGP*DTP*DTP*DGP*DGP*DGP*DAP*DTP*DTP*DGP*DT)-3')
1
syn
polymer
3693.414
DNA (5'-D(P*DCP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DAP*DAP*DGP*DC)-3')
1
syn
polymer
3944.601
DNA (5'-D(P*DGP*DCP*DTP*DTP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DGP*DA)-3')
1
syn
polymer
3782.476
DNA (5'-D(P*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DGP*DAP*DA)-3')
1
syn
polymer
3855.539
DNA (5'-D(P*DTP*DTP*DCP*DAP*DCP*DCP*DCP*DTP*DAP*DAP*DCP*DCP*DA)-3')
1
syn
polymer
3631.394
DNA (5'-D(P*DGP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DTP*DTP*DCP*DG)-3')
1
syn
polymer
3997.607
DNA (5'-D(P*DCP*DGP*DAP*DAP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DCP*DT)-3')
1
syn
polymer
3566.357
DNA (5'-D(P*DCP*DAP*DAP*DTP*DCP*DCP*DCP*DAP*DAP*DCP*DTP*DT)-3')
1
syn
polymer
22111.668
HOLLIDAY JUNCTION DNA HELICASE RUVA
1
man
polymer
no
no
(DA)(DA)(DG)(DT)(DT)(DG)(DG)(DG)(DA)(DT)(DT)(DG)(DT)
AAGTTGGGATTGT
B
polydeoxyribonucleotide
no
no
(DC)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DA)(DA)(DG)(DC)
CTGTGTGTAAGC
C
polydeoxyribonucleotide
no
no
(DG)(DC)(DT)(DT)(DA)(DC)(DA)(DC)(DA)(DC)(DA)(DG)(DA)
GCTTACACACAGA
D
polydeoxyribonucleotide
no
no
(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DA)(DA)
GGTTAGGGTGAA
E
polydeoxyribonucleotide
no
no
(DT)(DT)(DC)(DA)(DC)(DC)(DC)(DT)(DA)(DA)(DC)(DC)(DA)
TTCACCCTAACCA
F
polydeoxyribonucleotide
no
no
(DG)(DA)(DC)(DA)(DC)(DA)(DC)(DA)(DT)(DT)(DC)(DG)
GACACACATTCG
G
polydeoxyribonucleotide
no
no
(DC)(DG)(DA)(DA)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DC)(DT)
CGAATGTGTGTCT
H
polydeoxyribonucleotide
no
no
(DC)(DA)(DA)(DT)(DC)(DC)(DC)(DA)(DA)(DC)(DT)(DT)
CAATCCCAACTT
I
polydeoxyribonucleotide
no
no
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG
VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG
VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
PLASMID
PET
1
VAPOR DIFFUSION, HANGING DROP
6.0
ammonium sulfate, sodium chloride, glycerol, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
MES
1
glycerol
1
NaCl
1
(NH4)2SO4
1
glycerol
2
NaCl
2
(NH4)2SO4
2
9.086
11
B
402
C
511
6.473
B_DA402:DG511_C
1
-3.266
-1.302
0.472
-0.040
2.513
5
8
B
403
C
510
8.328
B_DG403:DA510_C
2
-2.055
-2.126
0.168
0.106
-11.097
1
20
B
404
C
509
6.971
B_DT404:DA509_C
3
-8.136
-0.135
1.257
-0.412
-1.213
11
3
B
406
C
507
-7.778
B_DG406:DG507_C
4
2.324
0.165
-0.395
-0.664
5.395
B
407
C
506
-1.670
B_DG407:DT506_C
5
-12.141
-0.184
-0.285
-0.117
1.549
5
4
B
408
C
505
-8.514
B_DG408:DG505_C
6
-2.290
-0.687
-0.427
-0.458
1.503
1
20
B
409
C
504
-1.346
B_DA409:DT504_C
7
-8.479
-0.275
-0.093
-0.706
12.869
1
B
410
C
503
-4.115
B_DT410:DG503_C
8
-9.545
-1.452
0.025
-0.052
-8.522
1
B
412
C
501
16.021
B_DG412:DC501_C
9
-11.099
1.558
0.776
0.451
3.412
34.588
B
B
402
403
-3.631
C
C
511
510
3.366
-2.155
0.484
-0.373
BB_DA402DG403:DA510DG511_CC
1
3.168
-5.340
34.381
-0.283
-0.306
3.859
45.007
B
B
403
404
-4.947
C
C
510
509
3.916
-3.768
0.092
-0.206
BB_DG403DT404:DA509DA510_CC
2
-7.296
9.579
44.290
0.138
-0.907
6.180
75.885
B
B
404
406
-1.532
C
C
509
507
6.294
-1.878
-0.443
-0.077
BB_DT404DG406:DG507DA509_CC
3
11.805
-9.629
75.078
0.045
1.036
3.031
32.511
B
B
406
407
19.044
C
C
507
506
3.054
10.460
-0.520
0.301
BB_DG406DG407:DT506DG507_CC
4
-3.542
6.448
30.625
-1.219
0.333
3.292
32.080
B
B
407
408
-1.688
C
C
506
505
3.272
-0.932
-0.204
-0.847
BB_DG407DG408:DG505DT506_CC
5
0.446
-0.807
32.063
-1.365
0.450
2.916
35.642
B
B
408
409
15.999
C
C
505
504
3.214
9.674
0.552
-0.585
BB_DG408DA409:DT504DG505_CC
6
-1.759
2.909
34.301
-2.299
-1.147
2.551
35.292
B
B
409
410
-21.701
C
C
504
503
3.147
-12.868
0.014
1.099
BB_DA409DT410:DG503DT504_CC
7
1.354
-2.283
32.905
3.535
0.158
7.184
89.397
B
B
410
412
-1.121
C
C
503
501
7.202
-1.577
0.637
0.683
BB_DT410DG412:DC501DG503_CC
8
-1.333
0.948
89.378
0.556
-0.513
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2000-07-21
1
1
2008-04-26
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
contains the same protein without DNA
RCSB
Y
RCSB
2000-04-03
REL
REL
A
401
n
1
DA
401
B
A
402
n
2
DA
402
B
G
403
n
3
DG
403
B
T
404
n
4
DT
404
B
T
405
n
5
DT
405
B
G
406
n
6
DG
406
B
G
407
n
7
DG
407
B
G
408
n
8
DG
408
B
A
409
n
9
DA
409
B
T
410
n
10
DT
410
B
T
411
n
11
DT
411
B
G
412
n
12
DG
412
B
T
413
n
13
DT
413
B
C
501
n
1
DC
501
C
T
502
n
2
DT
502
C
G
503
n
3
DG
503
C
T
504
n
4
DT
504
C
G
505
n
5
DG
505
C
T
506
n
6
DT
506
C
G
507
n
7
DG
507
C
T
508
n
8
DT
508
C
A
509
n
9
DA
509
C
A
510
n
10
DA
510
C
G
511
n
11
DG
511
C
C
512
n
12
DC
512
C
G
401
n
1
DG
401
D
C
402
n
2
DC
402
D
T
403
n
3
DT
403
D
T
404
n
4
DT
404
D
A
405
n
5
DA
405
D
C
406
n
6
DC
406
D
A
407
n
7
DA
407
D
C
408
n
8
DC
408
D
A
409
n
9
DA
409
D
C
410
n
10
DC
410
D
A
411
n
11
DA
411
D
G
412
n
12
DG
412
D
A
413
n
13
DA
413
D
G
501
n
1
DG
501
E
G
502
n
2
DG
502
E
T
503
n
3
DT
503
E
T
504
n
4
DT
504
E
A
505
n
5
DA
505
E
G
506
n
6
DG
506
E
G
507
n
7
DG
507
E
G
508
n
8
DG
508
E
T
509
n
9
DT
509
E
G
510
n
10
DG
510
E
A
511
n
11
DA
511
E
A
512
n
12
DA
512
E
T
401
n
1
DT
401
F
T
402
n
2
DT
402
F
C
403
n
3
DC
403
F
A
404
n
4
DA
404
F
C
405
n
5
DC
405
F
C
406
n
6
DC
406
F
C
407
n
7
DC
407
F
T
408
n
8
DT
408
F
A
409
n
9
DA
409
F
A
410
n
10
DA
410
F
C
411
n
11
DC
411
F
C
412
n
12
DC
412
F
A
413
n
13
DA
413
F
G
501
n
1
DG
501
G
A
502
n
2
DA
502
G
C
503
n
3
DC
503
G
A
504
n
4
DA
504
G
C
505
n
5
DC
505
G
A
506
n
6
DA
506
G
C
507
n
7
DC
507
G
A
508
n
8
DA
508
G
T
509
n
9
DT
509
G
T
510
n
10
DT
510
G
C
511
n
11
DC
511
G
G
512
n
12
DG
512
G
C
401
n
1
DC
401
H
G
402
n
2
DG
402
H
A
403
n
3
DA
403
H
A
404
n
4
DA
404
H
T
405
n
5
DT
405
H
G
406
n
6
DG
406
H
T
407
n
7
DT
407
H
G
408
n
8
DG
408
H
T
409
n
9
DT
409
H
G
410
n
10
DG
410
H
T
411
n
11
DT
411
H
C
412
n
12
DC
412
H
T
413
n
13
DT
413
H
C
501
n
1
DC
501
I
A
502
n
2
DA
502
I
A
503
n
3
DA
503
I
T
504
n
4
DT
504
I
C
505
n
5
DC
505
I
C
506
n
6
DC
506
I
C
507
n
7
DC
507
I
A
508
n
8
DA
508
I
A
509
n
9
DA
509
I
C
510
n
10
DC
510
I
T
511
n
11
DT
511
I
T
512
n
12
DT
512
I
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
GLY
3
n
3
GLY
3
A
ARG
4
n
4
ARG
4
A
LEU
5
n
5
LEU
5
A
ARG
6
n
6
ARG
6
A
GLY
7
n
7
GLY
7
A
ILE
8
n
8
ILE
8
A
ILE
9
n
9
ILE
9
A
ILE
10
n
10
ILE
10
A
GLU
11
n
11
GLU
11
A
LYS
12
n
12
LYS
12
A
GLN
13
n
13
GLN
13
A
PRO
14
n
14
PRO
14
A
PRO
15
n
15
PRO
15
A
LEU
16
n
16
LEU
16
A
VAL
17
n
17
VAL
17
A
LEU
18
n
18
LEU
18
A
ILE
19
n
19
ILE
19
A
GLU
20
n
20
GLU
20
A
VAL
21
n
21
VAL
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
VAL
24
n
24
VAL
24
A
GLY
25
n
25
GLY
25
A
TYR
26
n
26
TYR
26
A
GLU
27
n
27
GLU
27
A
VAL
28
n
28
VAL
28
A
HIS
29
n
29
HIS
29
A
MET
30
n
30
MET
30
A
PRO
31
n
31
PRO
31
A
MET
32
n
32
MET
32
A
THR
33
n
33
THR
33
A
CYS
34
n
34
CYS
34
A
PHE
35
n
35
PHE
35
A
TYR
36
n
36
TYR
36
A
GLU
37
n
37
GLU
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLU
40
n
40
GLU
40
A
ALA
41
n
41
ALA
41
A
GLY
42
n
42
GLY
42
A
GLN
43
n
43
GLN
43
A
GLU
44
n
44
GLU
44
A
ALA
45
n
45
ALA
45
A
ILE
46
n
46
ILE
46
A
VAL
47
n
47
VAL
47
A
PHE
48
n
48
PHE
48
A
THR
49
n
49
THR
49
A
HIS
50
n
50
HIS
50
A
PHE
51
n
51
PHE
51
A
VAL
52
n
52
VAL
52
A
VAL
53
n
53
VAL
53
A
ARG
54
n
54
ARG
54
A
GLU
55
n
55
GLU
55
A
ASP
56
n
56
ASP
56
A
ALA
57
n
57
ALA
57
A
GLN
58
n
58
GLN
58
A
LEU
59
n
59
LEU
59
A
LEU
60
n
60
LEU
60
A
TYR
61
n
61
TYR
61
A
GLY
62
n
62
GLY
62
A
PHE
63
n
63
PHE
63
A
ASN
64
n
64
ASN
64
A
ASN
65
n
65
ASN
65
A
LYS
66
n
66
LYS
66
A
GLN
67
n
67
GLN
67
A
GLU
68
n
68
GLU
68
A
ARG
69
n
69
ARG
69
A
THR
70
n
70
THR
70
A
LEU
71
n
71
LEU
71
A
PHE
72
n
72
PHE
72
A
LYS
73
n
73
LYS
73
A
GLU
74
n
74
GLU
74
A
LEU
75
n
75
LEU
75
A
ILE
76
n
76
ILE
76
A
LYS
77
n
77
LYS
77
A
THR
78
n
78
THR
78
A
ASN
79
n
79
ASN
79
A
GLY
80
n
80
GLY
80
A
VAL
81
n
81
VAL
81
A
GLY
82
n
82
GLY
82
A
PRO
83
n
83
PRO
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
ALA
86
n
86
ALA
86
A
LEU
87
n
87
LEU
87
A
ALA
88
n
88
ALA
88
A
ILE
89
n
89
ILE
89
A
LEU
90
n
90
LEU
90
A
SER
91
n
91
SER
91
A
GLY
92
n
92
GLY
92
A
MET
93
n
93
MET
93
A
SER
94
n
94
SER
94
A
ALA
95
n
95
ALA
95
A
GLN
96
n
96
GLN
96
A
GLN
97
n
97
GLN
97
A
PHE
98
n
98
PHE
98
A
VAL
99
n
99
VAL
99
A
ASN
100
n
100
ASN
100
A
ALA
101
n
101
ALA
101
A
VAL
102
n
102
VAL
102
A
GLU
103
n
103
GLU
103
A
ARG
104
n
104
ARG
104
A
GLU
105
n
105
GLU
105
A
GLU
106
n
106
GLU
106
A
VAL
107
n
107
VAL
107
A
GLY
108
n
108
GLY
108
A
ALA
109
n
109
ALA
109
A
LEU
110
n
110
LEU
110
A
VAL
111
n
111
VAL
111
A
LYS
112
n
112
LYS
112
A
LEU
113
n
113
LEU
113
A
PRO
114
n
114
PRO
114
A
GLY
115
n
115
GLY
115
A
ILE
116
n
116
ILE
116
A
GLY
117
n
117
GLY
117
A
LYS
118
n
118
LYS
118
A
LYS
119
n
119
LYS
119
A
THR
120
n
120
THR
120
A
ALA
121
n
121
ALA
121
A
GLU
122
n
122
GLU
122
A
ARG
123
n
123
ARG
123
A
LEU
124
n
124
LEU
124
A
ILE
125
n
125
ILE
125
A
VAL
126
n
126
VAL
126
A
GLU
127
n
127
GLU
127
A
MET
128
n
128
MET
128
A
LYS
129
n
129
LYS
129
A
ASP
130
n
130
ASP
130
A
ARG
131
n
131
ARG
131
A
PHE
132
n
132
PHE
132
A
LYS
133
n
133
LYS
133
A
GLY
134
n
134
GLY
134
A
LEU
135
n
135
LEU
135
A
HIS
136
n
136
HIS
136
A
GLY
137
n
137
GLY
137
A
ASP
138
n
138
ASP
138
A
LEU
139
n
139
LEU
139
A
PHE
140
n
140
PHE
140
A
THR
141
n
141
THR
141
A
PRO
142
n
142
PRO
142
A
ALA
143
n
143
ALA
143
A
ALA
144
n
144
ALA
144
A
ASP
145
n
145
ASP
145
A
LEU
146
n
146
LEU
146
A
VAL
147
n
147
VAL
147
A
LEU
148
n
148
LEU
148
A
THR
149
n
149
THR
149
A
SER
150
n
150
SER
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
ALA
155
n
155
ALA
155
A
THR
156
n
156
THR
156
A
ASP
157
n
157
ASP
157
A
ASP
158
n
158
ASP
158
A
ALA
159
n
159
ALA
159
A
GLU
160
n
160
GLU
160
A
GLN
161
n
161
GLN
161
A
GLU
162
n
162
GLU
162
A
ALA
163
n
163
ALA
163
A
VAL
164
n
164
VAL
164
A
ALA
165
n
165
ALA
165
A
ALA
166
n
166
ALA
166
A
LEU
167
n
167
LEU
167
A
VAL
168
n
168
VAL
168
A
ALA
169
n
169
ALA
169
A
LEU
170
n
170
LEU
170
A
GLY
171
n
171
GLY
171
A
TYR
172
n
172
TYR
172
A
LYS
173
n
173
LYS
173
A
PRO
174
n
174
PRO
174
A
GLN
175
n
175
GLN
175
A
GLU
176
n
176
GLU
176
A
ALA
177
n
177
ALA
177
A
SER
178
n
178
SER
178
A
ARG
179
n
179
ARG
179
A
MET
180
n
180
MET
180
A
VAL
181
n
181
VAL
181
A
SER
182
n
182
SER
182
A
LYS
183
n
183
LYS
183
A
ILE
184
n
184
ILE
184
A
ALA
185
n
185
ALA
185
A
ARG
186
n
186
ARG
186
A
PRO
187
n
187
PRO
187
A
ASP
188
n
188
ASP
188
A
ALA
189
n
189
ALA
189
A
SER
190
n
190
SER
190
A
SER
191
n
191
SER
191
A
GLU
192
n
192
GLU
192
A
THR
193
n
193
THR
193
A
LEU
194
n
194
LEU
194
A
ILE
195
n
195
ILE
195
A
ARG
196
n
196
ARG
196
A
GLU
197
n
197
GLU
197
A
ALA
198
n
198
ALA
198
A
LEU
199
n
199
LEU
199
A
ARG
200
n
200
ARG
200
A
ALA
201
n
201
ALA
201
A
ALA
202
n
202
ALA
202
A
LEU
203
n
203
LEU
203
A
author_defined_assembly
36
36-meric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
21_555
z,y,-x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
23_555
-z,y,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
8
I
N
ILE
8
A
O
GLU
20
I
O
GLU
20
A
N
VAL
21
I
N
VAL
21
A
O
VAL
24
I
O
VAL
24
A
N
HIS
29
I
N
HIS
29
A
O
LEU
60
I
O
LEU
60
A
O
TYR
61
I
O
TYR
61
A
N
HIS
50
I
N
HIS
50
A
O
ALA
45
I
O
ALA
45
A
N
GLY
7
I
N
GLY
7
1
A
PRO
151
I
PRO
151
1
Y
1
A
ALA
152
I
ALA
152
1
Y
1
A
SER
153
I
SER
153
1
Y
1
A
PRO
154
I
PRO
154
1
Y
1
E
A
OP1
NH1
DA
ARG
505
123
2.14
B
1
C
A
OP1
NH1
DG
ARG
505
123
2.17
A
1
A
PHE
132
-14.47
1
A
A
C
N
ILE
GLY
116
117
1.61
1
17.89
2.50
121.70
139.59
A
A
A
C
N
CA
VAL
ARG
ARG
53
54
54
Y
1
12.52
2.00
110.40
122.92
A
A
A
CB
CA
C
ARG
ARG
ARG
54
54
54
N
1
-28.02
2.00
111.60
83.58
A
A
A
CB
CA
C
ILE
ILE
ILE
116
116
116
N
1
-15.00
2.10
122.30
107.30
A
A
A
C
N
CA
ILE
GLY
GLY
116
117
117
Y
1
-29.80
2.50
113.10
83.30
A
A
A
N
CA
C
GLY
GLY
GLY
134
134
134
N
1
A
A
C
N
ILE
GLY
116
117
0.270
0.023
1.336
1.606
Y
1
A
A
CA
C
GLY
GLY
117
117
0.124
0.016
1.514
1.638
N
1
A
A
NE
NH1
ARG
ARG
104
104
1.89
1_555
13_555
1
A
A
NH2
OD2
ARG
ASP
186
188
1.91
1_555
5_555
1
A
A
NH1
NH1
ARG
ARG
104
104
2.09
1_555
13_555
1
A
LEU
124
-47.63
-80.79
1
A
ILE
125
-39.10
-32.97
1
A
LYS
129
-45.02
-73.63
1
A
PHE
132
-54.89
-174.17
1
A
LYS
133
51.22
112.07
1
A
ALA
185
45.44
82.67
1
A
ARG
186
-167.88
58.46
0.279
0.011
0.249
0.25
3.10
45.80
631
6491
6491
9.7
99.9
random
3475770.71
0.00
1
THROUGHOUT
0.0
88.2948
0.425315
0.45
0.38
6.00
0.36
0.34
3.10
45.80
0
3565
0
2038
1527
0.011
1.4
20.4
1.21
0.365
0.039
0.337
3.24
86
705
8
10.9
100.0
34.9
3.0
80.0
1C7Y
7136
7136
0.0
0.054
1
47.0
13.4
99.9
0.275
3.00
3.11
691
100.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
MLPHARE
refinement
CNS
0.9
E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
9
N
N
A
PRO
31
I
PRO
31
HELX_P
A
TYR
36
I
TYR
36
1
1
6
A
ASN
65
I
ASN
65
HELX_P
A
THR
78
I
THR
78
1
2
14
A
GLY
82
I
GLY
82
HELX_P
A
MET
93
I
MET
93
1
3
12
A
SER
94
I
SER
94
HELX_P
A
ARG
104
I
ARG
104
1
4
11
A
GLU
106
I
GLU
106
HELX_P
A
LYS
112
I
LYS
112
1
5
7
A
GLY
117
I
GLY
117
HELX_P
A
ASP
130
I
ASP
130
1
6
14
A
ALA
143
I
ALA
143
HELX_P
A
SER
150
I
SER
150
1
7
8
A
ASP
157
I
ASP
157
HELX_P
A
LEU
170
I
LEU
170
1
8
14
A
LYS
173
I
LYS
173
HELX_P
A
ALA
185
I
ALA
185
1
9
13
A
SER
190
I
SER
190
HELX_P
A
LEU
203
I
LEU
203
1
10
14
hydrog
DA-DG MISPAIR
A
A
B
DA
402
A
N6
DA
2
1_555
C
DG
511
B
O6
DG
11
1_555
hydrog
TYPE_8_PAIR
A
A
B
DG
403
A
N1
DG
3
1_555
C
DA
510
B
N1
DA
10
1_555
hydrog
TYPE_8_PAIR
A
A
B
DG
403
A
O6
DG
3
1_555
C
DA
510
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
A
A
B
DT
404
A
N3
DT
4
1_555
C
DA
509
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
A
A
B
DT
404
A
O4
DT
4
1_555
C
DA
509
B
N6
DA
9
1_555
hydrog
TYPE_3_PAIR
A
A
B
DG
406
A
N1
DG
6
1_555
C
DG
507
B
O6
DG
7
1_555
hydrog
TYPE_3_PAIR
A
A
B
DG
406
A
O6
DG
6
1_555
C
DG
507
B
N1
DG
7
1_555
hydrog
DG-DT MISPAIR
A
A
B
DG
407
A
N2
DG
7
1_555
C
DT
506
B
O2
DT
6
1_555
hydrog
TYPE_4_PAIR
A
A
B
DG
408
A
N2
DG
8
1_555
C
DG
505
B
N3
DG
5
1_555
hydrog
TYPE_4_PAIR
A
A
B
DG
408
A
N3
DG
8
1_555
C
DG
505
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
A
B
DA
409
A
N1
DA
9
1_555
C
DT
504
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
A
B
DA
409
A
N6
DA
9
1_555
C
DT
504
B
O4
DT
4
1_555
hydrog
DT-DG MISPAIR
A
A
B
DT
410
A
O2
DT
10
1_555
C
DG
503
B
N2
DG
3
1_555
hydrog
DG-DC PAIR
A
A
B
DG
412
A
N2
DG
12
1_555
C
DC
501
B
O2
DC
1
1_555
RECOMBINATION/DNA
helix-hairpin-helix, protein-DNA complex, homologous recombination, Holliday junction, RECOMBINATION-DNA COMPLEX
A
PRO
14
I
PRO
14
1
A
PRO
15
I
PRO
15
0.22
RUVA_ECOLI
UNP
9
1
P0A809
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG
VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
1C7Y
PDB
1
1C7Y
1C7Y
PDB
2
1C7Y
1C7Y
PDB
3
1C7Y
1C7Y
PDB
4
1C7Y
1C7Y
PDB
5
1C7Y
1C7Y
PDB
6
1C7Y
1C7Y
PDB
7
1C7Y
1C7Y
PDB
8
1C7Y
1
203
1C7Y
1
203
P0A809
A
1
1
203
401
413
1C7Y
401
413
1C7Y
B
2
1
13
501
512
1C7Y
501
512
1C7Y
C
3
1
12
401
413
1C7Y
401
413
1C7Y
D
4
1
13
501
512
1C7Y
501
512
1C7Y
E
5
1
12
401
413
1C7Y
401
413
1C7Y
F
6
1
13
501
512
1C7Y
501
512
1C7Y
G
7
1
12
401
413
1C7Y
401
413
1C7Y
H
8
1
13
501
512
1C7Y
501
512
1C7Y
I
9
1
12
6
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ARG
4
I
ARG
4
A
GLN
13
I
GLN
13
A
LEU
16
I
LEU
16
A
VAL
21
I
VAL
21
A
VAL
24
I
VAL
24
A
HIS
29
I
HIS
29
A
LEU
60
I
LEU
60
A
PHE
63
I
PHE
63
A
GLU
44
I
GLU
44
A
PHE
51
I
PHE
51
A
ARG
4
I
ARG
4
A
GLN
13
I
GLN
13
211
cubic
I 4 3 2