0.006303 0.000000 0.000000 0.000000 0.006303 0.000000 0.000000 0.000000 0.006303 0.00000 0.00000 0.00000 Ariyoshi, M. Nishino, T. Iwasaki, H. Shinagawa, H. Morikawa, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 48 90.0 90.0 90.0 158.65 158.65 158.65 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 S C N 306 N C N 307 N C N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C N 328 N C N 329 N C N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N C N 353 N N N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C N 375 N C N 376 N S N 377 N C N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C N 418 N C N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N N N 431 S C N 432 N C N 433 N O N 434 N C N 435 N O N 436 N O N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N N N 445 S C N 446 N C N 447 N O N 448 R C N 449 N O N 450 N C N 451 N O N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N N N 462 S C N 463 N C N 464 N O N 465 N C Y 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N C Y 471 N C N 472 N O N 473 N O N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N N N 486 S C N 487 N C N 488 N O N 489 N C N 490 N C N 491 N C N 492 N O N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N doub N 400 N sing Y 401 N doub N 402 N sing Y 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N doub N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N doub N 460 N sing N 461 N sing N 462 N sing N 463 N sing Y 464 N doub Y 465 N sing Y 466 N sing N 467 N sing Y 468 N doub N 469 N sing Y 470 N doub N 471 N sing Y 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N doub N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 8257 8262 10.1073/pnas.140212997 10890893 Crystal structure of the holliday junction DNA in complex with a single RuvA tetramer. 2000 10.2210/pdb1c7y/pdb pdb_00001c7y 100.0 1 IMAGE PLATE 1998-12-15 SINGLE WAVELENGTH M x-ray 1 1.000 1.0 BL-6B Photon Factory 1.000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6B 4061.655 DNA (5'-D(P*DAP*DAP*DGP*DTP*DTP*DGP*DGP*DGP*DAP*DTP*DTP*DGP*DT)-3') 1 syn polymer 3693.414 DNA (5'-D(P*DCP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DAP*DAP*DGP*DC)-3') 1 syn polymer 3944.601 DNA (5'-D(P*DGP*DCP*DTP*DTP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DGP*DA)-3') 1 syn polymer 3782.476 DNA (5'-D(P*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DGP*DAP*DA)-3') 1 syn polymer 3855.539 DNA (5'-D(P*DTP*DTP*DCP*DAP*DCP*DCP*DCP*DTP*DAP*DAP*DCP*DCP*DA)-3') 1 syn polymer 3631.394 DNA (5'-D(P*DGP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DTP*DTP*DCP*DG)-3') 1 syn polymer 3997.607 DNA (5'-D(P*DCP*DGP*DAP*DAP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DCP*DT)-3') 1 syn polymer 3566.357 DNA (5'-D(P*DCP*DAP*DAP*DTP*DCP*DCP*DCP*DAP*DAP*DCP*DTP*DT)-3') 1 syn polymer 22111.668 HOLLIDAY JUNCTION DNA HELICASE RUVA 1 man polymer no no (DA)(DA)(DG)(DT)(DT)(DG)(DG)(DG)(DA)(DT)(DT)(DG)(DT) AAGTTGGGATTGT B polydeoxyribonucleotide no no (DC)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DA)(DA)(DG)(DC) CTGTGTGTAAGC C polydeoxyribonucleotide no no (DG)(DC)(DT)(DT)(DA)(DC)(DA)(DC)(DA)(DC)(DA)(DG)(DA) GCTTACACACAGA D polydeoxyribonucleotide no no (DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DA)(DA) GGTTAGGGTGAA E polydeoxyribonucleotide no no (DT)(DT)(DC)(DA)(DC)(DC)(DC)(DT)(DA)(DA)(DC)(DC)(DA) TTCACCCTAACCA F polydeoxyribonucleotide no no (DG)(DA)(DC)(DA)(DC)(DA)(DC)(DA)(DT)(DT)(DC)(DG) GACACACATTCG G polydeoxyribonucleotide no no (DC)(DG)(DA)(DA)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DC)(DT) CGAATGTGTGTCT H polydeoxyribonucleotide no no (DC)(DA)(DA)(DT)(DC)(DC)(DC)(DA)(DA)(DC)(DT)(DT) CAATCCCAACTT I polydeoxyribonucleotide no no MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli PLASMID PET 1 VAPOR DIFFUSION, HANGING DROP 6.0 ammonium sulfate, sodium chloride, glycerol, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 MES 1 glycerol 1 NaCl 1 (NH4)2SO4 1 glycerol 2 NaCl 2 (NH4)2SO4 2 9.086 11 B 402 C 511 6.473 B_DA402:DG511_C 1 -3.266 -1.302 0.472 -0.040 2.513 5 8 B 403 C 510 8.328 B_DG403:DA510_C 2 -2.055 -2.126 0.168 0.106 -11.097 1 20 B 404 C 509 6.971 B_DT404:DA509_C 3 -8.136 -0.135 1.257 -0.412 -1.213 11 3 B 406 C 507 -7.778 B_DG406:DG507_C 4 2.324 0.165 -0.395 -0.664 5.395 B 407 C 506 -1.670 B_DG407:DT506_C 5 -12.141 -0.184 -0.285 -0.117 1.549 5 4 B 408 C 505 -8.514 B_DG408:DG505_C 6 -2.290 -0.687 -0.427 -0.458 1.503 1 20 B 409 C 504 -1.346 B_DA409:DT504_C 7 -8.479 -0.275 -0.093 -0.706 12.869 1 B 410 C 503 -4.115 B_DT410:DG503_C 8 -9.545 -1.452 0.025 -0.052 -8.522 1 B 412 C 501 16.021 B_DG412:DC501_C 9 -11.099 1.558 0.776 0.451 3.412 34.588 B B 402 403 -3.631 C C 511 510 3.366 -2.155 0.484 -0.373 BB_DA402DG403:DA510DG511_CC 1 3.168 -5.340 34.381 -0.283 -0.306 3.859 45.007 B B 403 404 -4.947 C C 510 509 3.916 -3.768 0.092 -0.206 BB_DG403DT404:DA509DA510_CC 2 -7.296 9.579 44.290 0.138 -0.907 6.180 75.885 B B 404 406 -1.532 C C 509 507 6.294 -1.878 -0.443 -0.077 BB_DT404DG406:DG507DA509_CC 3 11.805 -9.629 75.078 0.045 1.036 3.031 32.511 B B 406 407 19.044 C C 507 506 3.054 10.460 -0.520 0.301 BB_DG406DG407:DT506DG507_CC 4 -3.542 6.448 30.625 -1.219 0.333 3.292 32.080 B B 407 408 -1.688 C C 506 505 3.272 -0.932 -0.204 -0.847 BB_DG407DG408:DG505DT506_CC 5 0.446 -0.807 32.063 -1.365 0.450 2.916 35.642 B B 408 409 15.999 C C 505 504 3.214 9.674 0.552 -0.585 BB_DG408DA409:DT504DG505_CC 6 -1.759 2.909 34.301 -2.299 -1.147 2.551 35.292 B B 409 410 -21.701 C C 504 503 3.147 -12.868 0.014 1.099 BB_DA409DT410:DG503DT504_CC 7 1.354 -2.283 32.905 3.535 0.158 7.184 89.397 B B 410 412 -1.121 C C 503 501 7.202 -1.577 0.637 0.683 BB_DT410DG412:DC501DG503_CC 8 -1.333 0.948 89.378 0.556 -0.513 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 2000-07-21 1 1 2008-04-26 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession contains the same protein without DNA RCSB Y RCSB 2000-04-03 REL REL A 401 n 1 DA 401 B A 402 n 2 DA 402 B G 403 n 3 DG 403 B T 404 n 4 DT 404 B T 405 n 5 DT 405 B G 406 n 6 DG 406 B G 407 n 7 DG 407 B G 408 n 8 DG 408 B A 409 n 9 DA 409 B T 410 n 10 DT 410 B T 411 n 11 DT 411 B G 412 n 12 DG 412 B T 413 n 13 DT 413 B C 501 n 1 DC 501 C T 502 n 2 DT 502 C G 503 n 3 DG 503 C T 504 n 4 DT 504 C G 505 n 5 DG 505 C T 506 n 6 DT 506 C G 507 n 7 DG 507 C T 508 n 8 DT 508 C A 509 n 9 DA 509 C A 510 n 10 DA 510 C G 511 n 11 DG 511 C C 512 n 12 DC 512 C G 401 n 1 DG 401 D C 402 n 2 DC 402 D T 403 n 3 DT 403 D T 404 n 4 DT 404 D A 405 n 5 DA 405 D C 406 n 6 DC 406 D A 407 n 7 DA 407 D C 408 n 8 DC 408 D A 409 n 9 DA 409 D C 410 n 10 DC 410 D A 411 n 11 DA 411 D G 412 n 12 DG 412 D A 413 n 13 DA 413 D G 501 n 1 DG 501 E G 502 n 2 DG 502 E T 503 n 3 DT 503 E T 504 n 4 DT 504 E A 505 n 5 DA 505 E G 506 n 6 DG 506 E G 507 n 7 DG 507 E G 508 n 8 DG 508 E T 509 n 9 DT 509 E G 510 n 10 DG 510 E A 511 n 11 DA 511 E A 512 n 12 DA 512 E T 401 n 1 DT 401 F T 402 n 2 DT 402 F C 403 n 3 DC 403 F A 404 n 4 DA 404 F C 405 n 5 DC 405 F C 406 n 6 DC 406 F C 407 n 7 DC 407 F T 408 n 8 DT 408 F A 409 n 9 DA 409 F A 410 n 10 DA 410 F C 411 n 11 DC 411 F C 412 n 12 DC 412 F A 413 n 13 DA 413 F G 501 n 1 DG 501 G A 502 n 2 DA 502 G C 503 n 3 DC 503 G A 504 n 4 DA 504 G C 505 n 5 DC 505 G A 506 n 6 DA 506 G C 507 n 7 DC 507 G A 508 n 8 DA 508 G T 509 n 9 DT 509 G T 510 n 10 DT 510 G C 511 n 11 DC 511 G G 512 n 12 DG 512 G C 401 n 1 DC 401 H G 402 n 2 DG 402 H A 403 n 3 DA 403 H A 404 n 4 DA 404 H T 405 n 5 DT 405 H G 406 n 6 DG 406 H T 407 n 7 DT 407 H G 408 n 8 DG 408 H T 409 n 9 DT 409 H G 410 n 10 DG 410 H T 411 n 11 DT 411 H C 412 n 12 DC 412 H T 413 n 13 DT 413 H C 501 n 1 DC 501 I A 502 n 2 DA 502 I A 503 n 3 DA 503 I T 504 n 4 DT 504 I C 505 n 5 DC 505 I C 506 n 6 DC 506 I C 507 n 7 DC 507 I A 508 n 8 DA 508 I A 509 n 9 DA 509 I C 510 n 10 DC 510 I T 511 n 11 DT 511 I T 512 n 12 DT 512 I MET 1 n 1 MET 1 A ILE 2 n 2 ILE 2 A GLY 3 n 3 GLY 3 A ARG 4 n 4 ARG 4 A LEU 5 n 5 LEU 5 A ARG 6 n 6 ARG 6 A GLY 7 n 7 GLY 7 A ILE 8 n 8 ILE 8 A ILE 9 n 9 ILE 9 A ILE 10 n 10 ILE 10 A GLU 11 n 11 GLU 11 A LYS 12 n 12 LYS 12 A GLN 13 n 13 GLN 13 A PRO 14 n 14 PRO 14 A PRO 15 n 15 PRO 15 A LEU 16 n 16 LEU 16 A VAL 17 n 17 VAL 17 A LEU 18 n 18 LEU 18 A ILE 19 n 19 ILE 19 A GLU 20 n 20 GLU 20 A VAL 21 n 21 VAL 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A VAL 24 n 24 VAL 24 A GLY 25 n 25 GLY 25 A TYR 26 n 26 TYR 26 A GLU 27 n 27 GLU 27 A VAL 28 n 28 VAL 28 A HIS 29 n 29 HIS 29 A MET 30 n 30 MET 30 A PRO 31 n 31 PRO 31 A MET 32 n 32 MET 32 A THR 33 n 33 THR 33 A CYS 34 n 34 CYS 34 A PHE 35 n 35 PHE 35 A TYR 36 n 36 TYR 36 A GLU 37 n 37 GLU 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLU 40 n 40 GLU 40 A ALA 41 n 41 ALA 41 A GLY 42 n 42 GLY 42 A GLN 43 n 43 GLN 43 A GLU 44 n 44 GLU 44 A ALA 45 n 45 ALA 45 A ILE 46 n 46 ILE 46 A VAL 47 n 47 VAL 47 A PHE 48 n 48 PHE 48 A THR 49 n 49 THR 49 A HIS 50 n 50 HIS 50 A PHE 51 n 51 PHE 51 A VAL 52 n 52 VAL 52 A VAL 53 n 53 VAL 53 A ARG 54 n 54 ARG 54 A GLU 55 n 55 GLU 55 A ASP 56 n 56 ASP 56 A ALA 57 n 57 ALA 57 A GLN 58 n 58 GLN 58 A LEU 59 n 59 LEU 59 A LEU 60 n 60 LEU 60 A TYR 61 n 61 TYR 61 A GLY 62 n 62 GLY 62 A PHE 63 n 63 PHE 63 A ASN 64 n 64 ASN 64 A ASN 65 n 65 ASN 65 A LYS 66 n 66 LYS 66 A GLN 67 n 67 GLN 67 A GLU 68 n 68 GLU 68 A ARG 69 n 69 ARG 69 A THR 70 n 70 THR 70 A LEU 71 n 71 LEU 71 A PHE 72 n 72 PHE 72 A LYS 73 n 73 LYS 73 A GLU 74 n 74 GLU 74 A LEU 75 n 75 LEU 75 A ILE 76 n 76 ILE 76 A LYS 77 n 77 LYS 77 A THR 78 n 78 THR 78 A ASN 79 n 79 ASN 79 A GLY 80 n 80 GLY 80 A VAL 81 n 81 VAL 81 A GLY 82 n 82 GLY 82 A PRO 83 n 83 PRO 83 A LYS 84 n 84 LYS 84 A LEU 85 n 85 LEU 85 A ALA 86 n 86 ALA 86 A LEU 87 n 87 LEU 87 A ALA 88 n 88 ALA 88 A ILE 89 n 89 ILE 89 A LEU 90 n 90 LEU 90 A SER 91 n 91 SER 91 A GLY 92 n 92 GLY 92 A MET 93 n 93 MET 93 A SER 94 n 94 SER 94 A ALA 95 n 95 ALA 95 A GLN 96 n 96 GLN 96 A GLN 97 n 97 GLN 97 A PHE 98 n 98 PHE 98 A VAL 99 n 99 VAL 99 A ASN 100 n 100 ASN 100 A ALA 101 n 101 ALA 101 A VAL 102 n 102 VAL 102 A GLU 103 n 103 GLU 103 A ARG 104 n 104 ARG 104 A GLU 105 n 105 GLU 105 A GLU 106 n 106 GLU 106 A VAL 107 n 107 VAL 107 A GLY 108 n 108 GLY 108 A ALA 109 n 109 ALA 109 A LEU 110 n 110 LEU 110 A VAL 111 n 111 VAL 111 A LYS 112 n 112 LYS 112 A LEU 113 n 113 LEU 113 A PRO 114 n 114 PRO 114 A GLY 115 n 115 GLY 115 A ILE 116 n 116 ILE 116 A GLY 117 n 117 GLY 117 A LYS 118 n 118 LYS 118 A LYS 119 n 119 LYS 119 A THR 120 n 120 THR 120 A ALA 121 n 121 ALA 121 A GLU 122 n 122 GLU 122 A ARG 123 n 123 ARG 123 A LEU 124 n 124 LEU 124 A ILE 125 n 125 ILE 125 A VAL 126 n 126 VAL 126 A GLU 127 n 127 GLU 127 A MET 128 n 128 MET 128 A LYS 129 n 129 LYS 129 A ASP 130 n 130 ASP 130 A ARG 131 n 131 ARG 131 A PHE 132 n 132 PHE 132 A LYS 133 n 133 LYS 133 A GLY 134 n 134 GLY 134 A LEU 135 n 135 LEU 135 A HIS 136 n 136 HIS 136 A GLY 137 n 137 GLY 137 A ASP 138 n 138 ASP 138 A LEU 139 n 139 LEU 139 A PHE 140 n 140 PHE 140 A THR 141 n 141 THR 141 A PRO 142 n 142 PRO 142 A ALA 143 n 143 ALA 143 A ALA 144 n 144 ALA 144 A ASP 145 n 145 ASP 145 A LEU 146 n 146 LEU 146 A VAL 147 n 147 VAL 147 A LEU 148 n 148 LEU 148 A THR 149 n 149 THR 149 A SER 150 n 150 SER 150 A n 151 151 A n 152 152 A n 153 153 A n 154 154 A ALA 155 n 155 ALA 155 A THR 156 n 156 THR 156 A ASP 157 n 157 ASP 157 A ASP 158 n 158 ASP 158 A ALA 159 n 159 ALA 159 A GLU 160 n 160 GLU 160 A GLN 161 n 161 GLN 161 A GLU 162 n 162 GLU 162 A ALA 163 n 163 ALA 163 A VAL 164 n 164 VAL 164 A ALA 165 n 165 ALA 165 A ALA 166 n 166 ALA 166 A LEU 167 n 167 LEU 167 A VAL 168 n 168 VAL 168 A ALA 169 n 169 ALA 169 A LEU 170 n 170 LEU 170 A GLY 171 n 171 GLY 171 A TYR 172 n 172 TYR 172 A LYS 173 n 173 LYS 173 A PRO 174 n 174 PRO 174 A GLN 175 n 175 GLN 175 A GLU 176 n 176 GLU 176 A ALA 177 n 177 ALA 177 A SER 178 n 178 SER 178 A ARG 179 n 179 ARG 179 A MET 180 n 180 MET 180 A VAL 181 n 181 VAL 181 A SER 182 n 182 SER 182 A LYS 183 n 183 LYS 183 A ILE 184 n 184 ILE 184 A ALA 185 n 185 ALA 185 A ARG 186 n 186 ARG 186 A PRO 187 n 187 PRO 187 A ASP 188 n 188 ASP 188 A ALA 189 n 189 ALA 189 A SER 190 n 190 SER 190 A SER 191 n 191 SER 191 A GLU 192 n 192 GLU 192 A THR 193 n 193 THR 193 A LEU 194 n 194 LEU 194 A ILE 195 n 195 ILE 195 A ARG 196 n 196 ARG 196 A GLU 197 n 197 GLU 197 A ALA 198 n 198 ALA 198 A LEU 199 n 199 LEU 199 A ARG 200 n 200 ARG 200 A ALA 201 n 201 ALA 201 A ALA 202 n 202 ALA 202 A LEU 203 n 203 LEU 203 A author_defined_assembly 36 36-meric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 21_555 z,y,-x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 23_555 -z,y,x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 8 I N ILE 8 A O GLU 20 I O GLU 20 A N VAL 21 I N VAL 21 A O VAL 24 I O VAL 24 A N HIS 29 I N HIS 29 A O LEU 60 I O LEU 60 A O TYR 61 I O TYR 61 A N HIS 50 I N HIS 50 A O ALA 45 I O ALA 45 A N GLY 7 I N GLY 7 1 A PRO 151 I PRO 151 1 Y 1 A ALA 152 I ALA 152 1 Y 1 A SER 153 I SER 153 1 Y 1 A PRO 154 I PRO 154 1 Y 1 E A OP1 NH1 DA ARG 505 123 2.14 B 1 C A OP1 NH1 DG ARG 505 123 2.17 A 1 A PHE 132 -14.47 1 A A C N ILE GLY 116 117 1.61 1 17.89 2.50 121.70 139.59 A A A C N CA VAL ARG ARG 53 54 54 Y 1 12.52 2.00 110.40 122.92 A A A CB CA C ARG ARG ARG 54 54 54 N 1 -28.02 2.00 111.60 83.58 A A A CB CA C ILE ILE ILE 116 116 116 N 1 -15.00 2.10 122.30 107.30 A A A C N CA ILE GLY GLY 116 117 117 Y 1 -29.80 2.50 113.10 83.30 A A A N CA C GLY GLY GLY 134 134 134 N 1 A A C N ILE GLY 116 117 0.270 0.023 1.336 1.606 Y 1 A A CA C GLY GLY 117 117 0.124 0.016 1.514 1.638 N 1 A A NE NH1 ARG ARG 104 104 1.89 1_555 13_555 1 A A NH2 OD2 ARG ASP 186 188 1.91 1_555 5_555 1 A A NH1 NH1 ARG ARG 104 104 2.09 1_555 13_555 1 A LEU 124 -47.63 -80.79 1 A ILE 125 -39.10 -32.97 1 A LYS 129 -45.02 -73.63 1 A PHE 132 -54.89 -174.17 1 A LYS 133 51.22 112.07 1 A ALA 185 45.44 82.67 1 A ARG 186 -167.88 58.46 0.279 0.011 0.249 0.25 3.10 45.80 631 6491 6491 9.7 99.9 random 3475770.71 0.00 1 THROUGHOUT 0.0 88.2948 0.425315 0.45 0.38 6.00 0.36 0.34 3.10 45.80 0 3565 0 2038 1527 0.011 1.4 20.4 1.21 0.365 0.039 0.337 3.24 86 705 8 10.9 100.0 34.9 3.0 80.0 1C7Y 7136 7136 0.0 0.054 1 47.0 13.4 99.9 0.275 3.00 3.11 691 100.0 data reduction DENZO data scaling SCALEPACK phasing MLPHARE refinement CNS 0.9 E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 8 N N 9 N N A PRO 31 I PRO 31 HELX_P A TYR 36 I TYR 36 1 1 6 A ASN 65 I ASN 65 HELX_P A THR 78 I THR 78 1 2 14 A GLY 82 I GLY 82 HELX_P A MET 93 I MET 93 1 3 12 A SER 94 I SER 94 HELX_P A ARG 104 I ARG 104 1 4 11 A GLU 106 I GLU 106 HELX_P A LYS 112 I LYS 112 1 5 7 A GLY 117 I GLY 117 HELX_P A ASP 130 I ASP 130 1 6 14 A ALA 143 I ALA 143 HELX_P A SER 150 I SER 150 1 7 8 A ASP 157 I ASP 157 HELX_P A LEU 170 I LEU 170 1 8 14 A LYS 173 I LYS 173 HELX_P A ALA 185 I ALA 185 1 9 13 A SER 190 I SER 190 HELX_P A LEU 203 I LEU 203 1 10 14 hydrog DA-DG MISPAIR A A B DA 402 A N6 DA 2 1_555 C DG 511 B O6 DG 11 1_555 hydrog TYPE_8_PAIR A A B DG 403 A N1 DG 3 1_555 C DA 510 B N1 DA 10 1_555 hydrog TYPE_8_PAIR A A B DG 403 A O6 DG 3 1_555 C DA 510 B N6 DA 10 1_555 hydrog WATSON-CRICK A A B DT 404 A N3 DT 4 1_555 C DA 509 B N1 DA 9 1_555 hydrog WATSON-CRICK A A B DT 404 A O4 DT 4 1_555 C DA 509 B N6 DA 9 1_555 hydrog TYPE_3_PAIR A A B DG 406 A N1 DG 6 1_555 C DG 507 B O6 DG 7 1_555 hydrog TYPE_3_PAIR A A B DG 406 A O6 DG 6 1_555 C DG 507 B N1 DG 7 1_555 hydrog DG-DT MISPAIR A A B DG 407 A N2 DG 7 1_555 C DT 506 B O2 DT 6 1_555 hydrog TYPE_4_PAIR A A B DG 408 A N2 DG 8 1_555 C DG 505 B N3 DG 5 1_555 hydrog TYPE_4_PAIR A A B DG 408 A N3 DG 8 1_555 C DG 505 B N2 DG 5 1_555 hydrog WATSON-CRICK A A B DA 409 A N1 DA 9 1_555 C DT 504 B N3 DT 4 1_555 hydrog WATSON-CRICK A A B DA 409 A N6 DA 9 1_555 C DT 504 B O4 DT 4 1_555 hydrog DT-DG MISPAIR A A B DT 410 A O2 DT 10 1_555 C DG 503 B N2 DG 3 1_555 hydrog DG-DC PAIR A A B DG 412 A N2 DG 12 1_555 C DC 501 B O2 DC 1 1_555 RECOMBINATION/DNA helix-hairpin-helix, protein-DNA complex, homologous recombination, Holliday junction, RECOMBINATION-DNA COMPLEX A PRO 14 I PRO 14 1 A PRO 15 I PRO 15 0.22 RUVA_ECOLI UNP 9 1 P0A809 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL 1C7Y PDB 1 1C7Y 1C7Y PDB 2 1C7Y 1C7Y PDB 3 1C7Y 1C7Y PDB 4 1C7Y 1C7Y PDB 5 1C7Y 1C7Y PDB 6 1C7Y 1C7Y PDB 7 1C7Y 1C7Y PDB 8 1C7Y 1 203 1C7Y 1 203 P0A809 A 1 1 203 401 413 1C7Y 401 413 1C7Y B 2 1 13 501 512 1C7Y 501 512 1C7Y C 3 1 12 401 413 1C7Y 401 413 1C7Y D 4 1 13 501 512 1C7Y 501 512 1C7Y E 5 1 12 401 413 1C7Y 401 413 1C7Y F 6 1 13 501 512 1C7Y 501 512 1C7Y G 7 1 12 401 413 1C7Y 401 413 1C7Y H 8 1 13 501 512 1C7Y 501 512 1C7Y I 9 1 12 6 anti-parallel anti-parallel parallel anti-parallel anti-parallel A ARG 4 I ARG 4 A GLN 13 I GLN 13 A LEU 16 I LEU 16 A VAL 21 I VAL 21 A VAL 24 I VAL 24 A HIS 29 I HIS 29 A LEU 60 I LEU 60 A PHE 63 I PHE 63 A GLU 44 I GLU 44 A PHE 51 I PHE 51 A ARG 4 I ARG 4 A GLN 13 I GLN 13 211 cubic I 4 3 2