1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Miura, K. Tsuda, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 S C N 128 N C N 129 N C N 130 N C N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 S C N 147 N C N 148 N O N 149 N C N 150 N C N 151 N C N 152 N C N 153 N O N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N N N 168 S C N 169 N C N 170 N O N 171 N C N 172 N C N 173 N C N 174 N C N 175 N N N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N S N 199 N C N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 N C N 234 N O N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 R C N 248 N O N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing Y 258 N doub Y 259 N sing Y 260 N sing N 261 N sing Y 262 N doub N 263 N sing Y 264 N doub N 265 N sing Y 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 276 1304 1310 10.1074/jbc.M007902200 11010977 NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity. 2001 JA J.Biochem.(Tokyo) JOBIAO 0418 0021-924X 126 387 394 Determination of the Solution Structure of the N-Domain Plus Linker of Antarctic Eel Pout Antifreeze Protein Rd3 1999 UK Nature NATUAS 0006 0028-0836 384 285 288 10.1038/384285a0 Structural Basis for the Binding of a Globular Antifreeze Protein to Ice 1996 UK Structure STRUE6 2005 0969-2126 4 1325 1337 Refined Solution Structure of Type III Antifreeze Protein: Hydrophobic Groups May be Involved in the Energetics of the Protein-Ice Interaction 1996 NE Biochim.Biophys.Acta BBACAQ 0113 0006-3002 1247 163 172 10.1016/0167-4838(94)00205-U Antifreeze Peptide Heterogeneity in an Antarctic Eel Pout Includes an Unusually Large Major Variant Comprised of Two 7 kDa Type III Afps Linked in Tandem 1995 10.2210/pdb1c8a/pdb pdb_00001c8a 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 14490.035 PROTEIN (ANTIFREEZE PROTEIN TYPE III) 1 man polymer RD3 no no NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPNLVGMQVNRAVPLGTTLMPDMVKNYEDGTTSPGLKSVVANQL IPINTALTLVMMKAEEVSPKGIPSEEISKLVGMQVNRAVYLDQTLMPDMVKNYE NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPNLVGMQVNRAVPLGTTLMPDMVKNYEDGTTSPGLKSVVANQL IPINTALTLVMMKAEEVSPKGIPSEEISKLVGMQVNRAVYLDQTLMPDMVKNYE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pachycara BLOOD PLASMA Escherichia sample SYNTHETIC GENE 36221 Pachycara brachycephalum RD3 562 Escherichia coli JM105 PLASMID PLASMID PKK223-3UC database_2 pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection 1 0 2001-02-28 1 1 2008-04-26 1 2 2011-07-13 1 3 2022-02-16 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession 40 STRUCTURES RCSB Y RCSB 2000-05-04 REL THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C/15N-LABELED RD3 AVERAGE 40 1 NOESY 15N-1H HSQC 13C-1H HSQC 15N-TOCSYHSQC 15N-NOESYHSQC 15N-HNHA HNCA HNCACB CBCA(CO)NH C(CO)NH HC(CO)NH HCCH-TOCSY MOTHER-NOESY 6.7 1 atm 277 K SA 90% H2O/10% D2O BRUNGER refinement X-PLOR 3.851 structure solution X-PLOR 3.851 500 Varian UNITY ASN 1 n 1 ASN 1 A LYS 2 n 2 LYS 2 A ALA 3 n 3 ALA 3 A SER 4 n 4 SER 4 A VAL 5 n 5 VAL 5 A VAL 6 n 6 VAL 6 A ALA 7 n 7 ALA 7 A ASN 8 n 8 ASN 8 A GLN 9 n 9 GLN 9 A LEU 10 n 10 LEU 10 A ILE 11 n 11 ILE 11 A PRO 12 n 12 PRO 12 A ILE 13 n 13 ILE 13 A ASN 14 n 14 ASN 14 A THR 15 n 15 THR 15 A ALA 16 n 16 ALA 16 A LEU 17 n 17 LEU 17 A THR 18 n 18 THR 18 A LEU 19 n 19 LEU 19 A ILE 20 n 20 ILE 20 A MET 21 n 21 MET 21 A MET 22 n 22 MET 22 A LYS 23 n 23 LYS 23 A ALA 24 n 24 ALA 24 A GLU 25 n 25 GLU 25 A VAL 26 n 26 VAL 26 A VAL 27 n 27 VAL 27 A THR 28 n 28 THR 28 A PRO 29 n 29 PRO 29 A MET 30 n 30 MET 30 A GLY 31 n 31 GLY 31 A ILE 32 n 32 ILE 32 A PRO 33 n 33 PRO 33 A ALA 34 n 34 ALA 34 A GLU 35 n 35 GLU 35 A GLU 36 n 36 GLU 36 A ILE 37 n 37 ILE 37 A PRO 38 n 38 PRO 38 A ASN 39 n 39 ASN 39 A LEU 40 n 40 LEU 40 A VAL 41 n 41 VAL 41 A GLY 42 n 42 GLY 42 A MET 43 n 43 MET 43 A GLN 44 n 44 GLN 44 A VAL 45 n 45 VAL 45 A ASN 46 n 46 ASN 46 A ARG 47 n 47 ARG 47 A ALA 48 n 48 ALA 48 A VAL 49 n 49 VAL 49 A PRO 50 n 50 PRO 50 A LEU 51 n 51 LEU 51 A GLY 52 n 52 GLY 52 A THR 53 n 53 THR 53 A THR 54 n 54 THR 54 A LEU 55 n 55 LEU 55 A MET 56 n 56 MET 56 A PRO 57 n 57 PRO 57 A ASP 58 n 58 ASP 58 A MET 59 n 59 MET 59 A VAL 60 n 60 VAL 60 A LYS 61 n 61 LYS 61 A ASN 62 n 62 ASN 62 A TYR 63 n 63 TYR 63 A GLU 64 n 64 GLU 64 A ASP 65 n 65 ASP 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A THR 68 n 68 THR 68 A SER 69 n 69 SER 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A LEU 72 n 72 LEU 72 A LYS 73 n 73 LYS 73 A SER 74 n 74 SER 74 A VAL 75 n 75 VAL 75 A VAL 76 n 76 VAL 76 A ALA 77 n 77 ALA 77 A ASN 78 n 78 ASN 78 A GLN 79 n 79 GLN 79 A LEU 80 n 80 LEU 80 A ILE 81 n 81 ILE 81 A PRO 82 n 82 PRO 82 A ILE 83 n 83 ILE 83 A ASN 84 n 84 ASN 84 A THR 85 n 85 THR 85 A ALA 86 n 86 ALA 86 A LEU 87 n 87 LEU 87 A THR 88 n 88 THR 88 A LEU 89 n 89 LEU 89 A VAL 90 n 90 VAL 90 A MET 91 n 91 MET 91 A MET 92 n 92 MET 92 A LYS 93 n 93 LYS 93 A ALA 94 n 94 ALA 94 A GLU 95 n 95 GLU 95 A GLU 96 n 96 GLU 96 A VAL 97 n 97 VAL 97 A SER 98 n 98 SER 98 A PRO 99 n 99 PRO 99 A LYS 100 n 100 LYS 100 A GLY 101 n 101 GLY 101 A ILE 102 n 102 ILE 102 A PRO 103 n 103 PRO 103 A SER 104 n 104 SER 104 A GLU 105 n 105 GLU 105 A GLU 106 n 106 GLU 106 A ILE 107 n 107 ILE 107 A SER 108 n 108 SER 108 A LYS 109 n 109 LYS 109 A LEU 110 n 110 LEU 110 A VAL 111 n 111 VAL 111 A GLY 112 n 112 GLY 112 A MET 113 n 113 MET 113 A GLN 114 n 114 GLN 114 A VAL 115 n 115 VAL 115 A ASN 116 n 116 ASN 116 A ARG 117 n 117 ARG 117 A ALA 118 n 118 ALA 118 A VAL 119 n 119 VAL 119 A TYR 120 n 120 TYR 120 A LEU 121 n 121 LEU 121 A ASP 122 n 122 ASP 122 A GLN 123 n 123 GLN 123 A THR 124 n 124 THR 124 A LEU 125 n 125 LEU 125 A MET 126 n 126 MET 126 A PRO 127 n 127 PRO 127 A ASP 128 n 128 ASP 128 A MET 129 n 129 MET 129 A VAL 130 n 130 VAL 130 A LYS 131 n 131 LYS 131 A ASN 132 n 132 ASN 132 A TYR 133 n 133 TYR 133 A GLU 134 n 134 GLU 134 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 25 A O GLU 25 A N SER 4 A N SER 4 A N ALA 7 A N ALA 7 A O THR 53 A O THR 53 A O GLU 95 A O GLU 95 A N SER 74 A N SER 74 A N ALA 77 A N ALA 77 A O GLN 123 A O GLN 123 A N LEU 87 A N LEU 87 A O MET 113 A O MET 113 1 A ARG 47 0.314 SIDE CHAIN 1 A ARG 117 0.318 SIDE CHAIN 1 A PRO 12 -78.44 -164.71 1 A GLU 36 -96.01 46.01 1 A LYS 61 -71.27 -97.73 1 A THR 68 -90.05 -68.52 1 A PRO 70 -73.42 -98.09 1 A ASN 84 53.39 71.34 1 A ALA 86 -65.57 91.94 1 A THR 88 -118.97 -169.92 1 A SER 104 -95.24 37.25 1 A TYR 120 -101.05 -159.03 1 A LEU 121 -65.84 -153.25 1 A ASP 122 -45.74 84.30 NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES 1 N N A GLU 36 A GLU 36 HELX_P A VAL 41 A VAL 41 1 1 6 A GLU 106 A GLU 106 HELX_P A VAL 111 A VAL 111 1 2 6 ANTIFREEZE PROTEIN ANTIFREEZE, ANTIFREEZE PROTEIN, THERMAL HYSTERESIS PROTEIN, ICE BINDING PROTEIN A THR 28 A THR 28 1 A PRO 29 A PRO 29 -0.07 A SER 98 A SER 98 1 A PRO 99 A PRO 99 -0.30 ANP3_RHIDE UNP 1 1 P35753 NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPNLVGMQVNRAVPLGTTLMPDMVKNYEDGTTSPGLKSVVANQL IPINTALTLVMMKAEEVSPKGIPSEEISKLVGMQVNRAVYLDQTLMPDMVKNYE 1 134 1C8A 1 134 P35753 A 1 1 134 3 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A MET 22 A MET 22 A GLU 25 A GLU 25 A SER 4 A SER 4 A ALA 7 A ALA 7 A THR 53 A THR 53 A THR 54 A THR 54 A MET 92 A MET 92 A GLU 96 A GLU 96 A LYS 73 A LYS 73 A ALA 77 A ALA 77 A GLN 123 A GLN 123 A THR 124 A THR 124 A ALA 86 A ALA 86 A LEU 87 A LEU 87 A MET 113 A MET 113 A GLN 114 A GLN 114 ICE BINDING SITE Author 6 ICE BINDING SITE Author 6 A GLN 9 A GLN 9 6 1_555 A ASN 14 A ASN 14 6 1_555 A THR 15 A THR 15 6 1_555 A ALA 16 A ALA 16 6 1_555 A THR 18 A THR 18 6 1_555 A GLN 44 A GLN 44 6 1_555 A GLN 79 A GLN 79 6 1_555 A ASN 84 A ASN 84 6 1_555 A THR 85 A THR 85 6 1_555 A ALA 86 A ALA 86 6 1_555 A THR 88 A THR 88 6 1_555 A GLN 114 A GLN 114 6 1_555 1 P 1